The Ethical and Legal Framework for a Genomics England and Sano Genetics Participant Engagement Platform
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100000 Genomes and Genomics England
100,000 Genomes & Genomics England Tim Hubbard Genomics England King’s College London, King’s Health Partners Wellcome Trust Sanger Institute Global Leaders in Genomic Medicine Washington 8-9th January 2014 UK Health System 101 • Four separate health services – NHS England – NHS Wales – NHS Scotland – Health & Social Care in Northern Ireland (HSC) • NHS (England) – ~1.4 million employees – ~£110 billion annual budget • Structure in England changed 1st April 2013 https://www.gov.uk/government/organisations/department-of-health Linking Health data to Research Clinical Data Healthcare Professional World Genotype Electronic Health Record Whole Genome Sequencing Phenotype Electronic Genomic Biology Health Data World Records Reference Genotype and genome sequence Phenotype ~3 gigabytes relationship capture EBI: repositories (petabytes of genome sequence data) Human sequence data Sanger: sequencing repositories (1000 genomes, uk10K) Steps in UK towards E-Health Research, Genomic Medicine • Health data to Research – 2006 Creation of OSCHR • Increase coordination between funders: MRC and NIHR – 2007 OSCHR E-health board • Enable research access to UK EHR data • Build capacity for research on EHR data • Genomics to Health – 2009 House of Lords report on Genomic Medicine – 2010 Creation of Human Genomic Strategy Group (HGSG) 2011: UK Life Sciences Strategy No10: http://www.number10.gov.uk/news/uk-life-sciences-get-government-cash-boost/ BIS/DH: http://www.dh.gov.uk/health/2011/12/nhs-adopting-innovation/ Linking Health data to Research Clinical Data -
Functional Effects Detailed Research Plan
GeCIP Detailed Research Plan Form Background The Genomics England Clinical Interpretation Partnership (GeCIP) brings together researchers, clinicians and trainees from both academia and the NHS to analyse, refine and make new discoveries from the data from the 100,000 Genomes Project. The aims of the partnerships are: 1. To optimise: • clinical data and sample collection • clinical reporting • data validation and interpretation. 2. To improve understanding of the implications of genomic findings and improve the accuracy and reliability of information fed back to patients. To add to knowledge of the genetic basis of disease. 3. To provide a sustainable thriving training environment. The initial wave of GeCIP domains was announced in June 2015 following a first round of applications in January 2015. On the 18th June 2015 we invited the inaugurated GeCIP domains to develop more detailed research plans working closely with Genomics England. These will be used to ensure that the plans are complimentary and add real value across the GeCIP portfolio and address the aims and objectives of the 100,000 Genomes Project. They will be shared with the MRC, Wellcome Trust, NIHR and Cancer Research UK as existing members of the GeCIP Board to give advance warning and manage funding requests to maximise the funds available to each domain. However, formal applications will then be required to be submitted to individual funders. They will allow Genomics England to plan shared core analyses and the required research and computing infrastructure to support the proposed research. They will also form the basis of assessment by the Project’s Access Review Committee, to permit access to data. -
Genomics England and Sciencewise Evaluation of a Public Dialogue On
Genomics England and Sciencewise Evaluation of a public dialogue on Genomic Medicine: Time for a new social contract? Evaluation report June 2019 Quality Management URSUS Consulting Ltd has quality systems which have been assessed and approved to BS EN IS9001:2008 (certificate number GB2002687). Creation / Revision History Issue / revision: 3 Date: 19/6/2019 Prepared by: Anna MacGillivray Authorised by: Anna MacGillivray Project number: U.158 File reference: Genomics England/genomic medicine draft evaluation report 19.6.2019 URSUS CONSULTING LTD 57 Balfour Road London N5 2HD Tel. 07989 554 504 www.ursusconsulting.co.uk _________________________________________________________________________________________ URSUS CONSULTING GENOMICS ENGLAND AND SCIENCEWISE 2 Glossary of Acronyms ABI Association of British Insurers AI Artificial Intelligence APBI Association of British Pharmaceutical Industry BEIS (Department of) Business, Energy and Industrial Strategy BME Black and Minority Ethnic CMO Chief Medical Officer CSO (NHS) Chief Scientific Officer DA Devolved Administration DHSC Department of Health and Social Care FTE Full Time Equivalent GDPR General Data Protection Regulation GE Genomics England GG Generation Genome report GMS Genomic medicine service GMC General Medical Council NHS National Health Service OG Oversight Group REA Rapid Evidence Assessment SEG Socio economic group SGP Scottish Genomes Partnership SoS Secretary of State SSAC Scottish Science Advisory Committee SLT Senior Leadership Team UKRI UK Research and Innovation WGS Whole Genome Sequencing _________________________________________________________________________________________ URSUS CONSULTING GENOMICS ENGLAND AND SCIENCEWISE 3 EXECUTIVE SUMMARY Introduction This report of the independent evaluation of a public dialogue on Genomic Medicine: Time for a new social contract? has been prepared by URSUS Consulting Ltd on behalf of Genomics England (GE) and Sciencewise1. -
Returning Individual Research Results to Participants: Guidance for a New Research Paradigm
THE NATIONAL ACADEMIES PRESS This PDF is available at http://nap.edu/25094 SHARE Returning Individual Research Results to Participants: Guidance for a New Research Paradigm DETAILS 380 pages | 6 x 9 | PAPERBACK ISBN 978-0-309-47517-4 | DOI 10.17226/25094 CONTRIBUTORS GET THIS BOOK Jeffrey R. Botkin, Michelle Mancher, Emily R. Busta, and Autumn S. Downey, Editors; Committee on the Return of Individual-Specific Research Results Generated in Research Laboratories; Board on Health Sciences Policy; Health and FIND RELATED TITLES Medicine Division; National Academies of Sciences, Engineering, and Medicine Visit the National Academies Press at NAP.edu and login or register to get: – Access to free PDF downloads of thousands of scientific reports – 10% off the price of print titles – Email or social media notifications of new titles related to your interests – Special offers and discounts Distribution, posting, or copying of this PDF is strictly prohibited without written permission of the National Academies Press. (Request Permission) Unless otherwise indicated, all materials in this PDF are copyrighted by the National Academy of Sciences. Copyright © National Academy of Sciences. All rights reserved. Returning Individual Research Results to Participants: Guidance for a New Research Paradigm Returning Individual Research Results to Participants: Guidance for a New Research Paradigm Jeffrey R. Botkin, Michelle Mancher, Emily R. Busta, and Autumn S. Downey, Editors Committee on the Return of Individual-Specific Research Results Generated -
Dr Sophia Skyers Director, CIBS IQ Research
CIBS IQ Research Inclusion by Dialogue and Design 100,000 Genomes Project Black African and Black Caribbean Communities A Qualitative Exploration of Views on Participation Report Author: Dr Sophia Skyers Director, CIBS IQ Research June 2018 Acknowledgements Dr Sophia Skyers, the author, would like to thank all of the focus group participants, event attendees and radio panel members for the invaluable contribution that they have made to informing this report and to shaping its recommendations. The participation of the community and the critical exchange of views is vitally important, and projects such as these cannot be undertaken without that active engagement. The author would also like to thank Can-Survive UK, BME Cancer Communities, Genomics England, and all of the healthcare professionals, geneticists, genetics researchers, and stakeholders from a range of organisations for sharing their knowledge, experience and insights so openly, and to Dr Rohan Morris for sharing his experience on ethnicity and access in relation to clinical research. 2 Table of Contents Executive Summary 4 100,000 Genomes Project 4 1. Introduction and background 9 2. About the 100,000 Genomes Project 9 3. Purpose and approach to conducting the study 13 4. Discussion oF Findings 15 a) Interviews with stakeholders 15 b) Focus groups, awareness-raising events and media campaigns 24 5. Conclusion, synthesis and recommendations 38 Appendix A – Focus Groups 41 Appendix B – Awareness Raising Events and Radio Campaigns 42 Appendix B – Stakeholder Interviews 43 Appendix B – ReFerences 44 3 Executive Summary 100,000 Genomes Project The 100,000 Genomes Project is aiming to sequence 100,000 whole genomes from approximately 70,000 consented NHS patients in the UK with all types of cancer, and rare diseases, as well as patients’ family members, as these diseases are strongly linked to changes in the genome. -
Sarcoma Detailed Research Plan
GeCIP Detailed Research Plan Form Background The Genomics England Clinical Interpretation Partnership (GeCIP) brings together researchers, clinicians and trainees from both academia and the NHS to analyse, refine and make new discoveries from the data from the 100,000 Genomes Project. The aims of the partnerships are: 1. To optimise: • clinical data and sample collection • clinical reporting • data validation and interpretation. 2. To improve understanding of the implications of genomic findings and improve the accuracy and reliability of information fed back to patients. To add to knowledge of the genetic basis of disease. 3. To provide a sustainable thriving training environment. The initial wave of GeCIP domains was announced in June 2015 following a first round of applications with expressions of interest in January 2015. These will be used to ensure that the plans are complimentary and add real value across the GeCIP portfolio and address the aims and objectives of the 100,000 Genomes Project. They will be shared with the MRC, Wellcome Trust, NIHR and Cancer Research UK as existing members of the GeCIP Board to give advance warning and manage funding requests to maximise the funds available to each domain. However, formal applications will then be required to be submitted to individual funders. They will allow Genomics England to plan shared core analyses and the required research and computing infrastructure to support the proposed research. They will also form the basis of assessment by the Project’s Access Review Committee, to permit access to data. Domain leads are asked to complete all relevant sections of the GeCIP Detailed Research Plan Form, ensuring that you provide names of domain members involved in each aspect so we or funders can see who to approach if there are specific questions or feedback and that you provide details if your plan relies on a third party or commercial entity. -
The Legal Risks of Returning Results of Genomics Research
©American College of Medical Genetics and Genomics SPECIAL ARTICLE The legal risks of returning results of genomics research Ellen Wright Clayton, MD, JD1 and Amy L. McGuire, JD, PhD2 Published guidelines suggest that research results and incidental research results. We caution against this and argue in this essay that findings should be offered to study participants under some circum- the debate to date has failed to give adequate weight to a number of stances. Although some have argued against the return of results in fundamental ethical and policy issues that should undergird policy research, many cite an emerging consensus that there is an ethical on return of research results in the first instance, many of which go to obligation to return at least some results; the debate quickly turns the fundamental differences between research and clinical care. We to issues of mechanics (e.g., which results? who discloses? for how confine our comments to research using data from large biobanks, long does the obligation exist?). Although commentators are careful the topic of the guidelines proposed in this symposium issue. to distinguish this as an ethical rather than legal obligation, we wor- ry that return of results may unjustifiably become standard of care Genet Med 2012:14(4):473–477 based on this growing “consensus,” which could quickly lead to a le- Key Words: biobanking; ethics; genetics; law; policy; return of results gal (negligence-based) duty to offer and return individualized genetic A number of things seem to occur in many meetings about the published guidelines are generally guarded, the rhetoric return of individual results obtained in research involv- at these meetings both for and against offer and disclosure ing genome-wide tests and large amounts of clinical data. -
Meeting Minutes
Association of Bioethics Program Directors Westin Pittsburgh Convention Center Hotel Rooms 304 and 305 Pittsburgh, PA October 23, 2019 Meeting Minutes Meeting started at 6:00 PM In Attendance Applewhite Megan Albany Medical College Bolton Jonathan University of New Mexico Bulger Jeffrey Chicago Medical School Case Gretchen University of Utah Demme Richard University of Rochester Derse Arthur MCW Doukas David Tulane University Eberl Jason St. Louis University Gallagher Colleen University of Texas Garrett-Bell Jamila Emory University (notetaker) Goodman Ken University of Miami Grady Christine NIH Clinical Center Hendriksen Joan Children’s Minnesota Hester Micah UAMS Iltis Ana Wake Forest University Joffe Steve U Penn Jones Nora Temple University Juengst Eric UNC Kaldjian Lauris University of Iowa King Nancy Wake Forest University Kinlaw Kathy Emory University Klitzman Robert Columbia University Koenig Barbara UCSF Kogan Claudio U. of Texas Rio Grande Valley SOM Krohmal Ben MedStar Washington Kuczewski Mark Loyola University Lee Sandra Columbia University Lipman Hannah Hackensack University Medical Center Macpherson Cheryl St. George's University McGuire Amy Baylor College of Medicine Meador Keith VUMC Mitchell Christine Harvard Nash Ryan Ohio State University Parker Lisa University of Pittsburgh Powderly Kathy SUNY Downstate Medical Center Redinger Michael Western Michigan University Rhodes Rosamund Icahn School of Med at Mt. Sinai Rosell Tarris Kansas City University Rosenthal M. Sara University of Kentucky Sederstrom Nneka Children's Minnesota Sharp Richard Mayo Clinic Solomon Mildred The Hastings Center Streiffer Robert University of Wisconsin, Madison Tabor Holly Stanford Center Wilfond Ben Seattle Children’s Wolpe Paul Emory University Wynia Matt University of Colorado Welcome and Introductions: Paul Root Wolpe Paul welcomed and thanked members for attending the meeting. -
BMJ.2016.036140 Entitled "The Genomics England 100,000 Genomes Project" Response to Editor and Reviewer Comments
BMJ.2016.036140 entitled "The Genomics England 100,000 Genomes Project" Response to Editor and Reviewer Comments Editors' comments 1) While editors felt that your paper covered an interesting and relevant topic, we did not feel it was a good fit for the Analysis section of the journal in its current form. Typically Analysis articles are 1800-2000 word scholarly debate articles that present a clear argument. The paper as it currently stands is too detailed and too descriptive compared with the papers that we typically publish as Analysis, with no argument being put forward. -Thank you. We have shortened the manuscript from almost 4000 words to 2471. Furthermore, as also suggested by Reviewer 1, we have removed a lot of the descriptive/background material and added more data and emphasis relating to current challenges in NHS genomics and how the 100,000 Genomes Project is addressing these. 2) Editors also found the paper unclear as to when one of the key objectives of the 100,000 Genomes Project -- "to bring benefit to NHS patients" -- is supposed to be met and whether any of this goal has been met thus far. We would usually expect Analysis articles that cover specific projects and initiatives to include some information about outcomes, barriers, challenges etc. -Thank you. We have added examples of how a result can change management of a family and additional metrics around reports returned and diagnostic rate. We have also added a full section to the end entitled “Challenges, hurdles and future directions” as well as box e “100,000 Genomes Project: examples of early steps in catalysing complex change”, in which additional complex hurdles are addressed. -
Genomics England Is a Department of Health Company • Seconded to Genomics England from Queen Mary/Barts Who Pay My Salary • Multiple Industry Partnerships E.G
The 100,000 Genomes Project Transforming Healthcare Berlin Institute of Health Prof Sir Mark Caulfield FMedSci Chief Scientist William Harvey Research Institute Queen Mary University of London Disclosures • Genomics England is a Department of Health Company • Seconded to Genomics England from Queen Mary/Barts who pay my salary • Multiple industry partnerships e.g. Illumina, iQVIA • No shares in anything except failed banks in 2008 29 January 2021 2 The 100,000 Genomes Project Milestones Announced by David Cameron, former Prime Minister in December 2012 –An Olympic Legacy Genomics England launched by then Secretary of State for Health in speech during NHS 65th Anniversary Celebrations, July 2013 Opening of new Sequencing Centre by Theresa May in 2016 CMO’s Generation Genome and the Life Sciences report in 2017 Commissioning of new NHS Genomic Medicine Service October 2018 Reached goal of sequencing 100,000 genomes in December 2018 “aspiration to undertake 5 million genome analyses over the next 5 years” The 100,000 Genomes Project in numbers 29 January 2021 How did the 100,000 Genomes Project work • 13 NHS Genomic Medicine Centres covering England, over 98 hospitals • Responsible for identifying and recruiting participants and for clinical care following results • Northern Ireland, Scotland and Wales joined Discovery Forum Industry Users 29 January 2021 5 Scalable disease diagnostics Sequence depth germline 36x to 40x Somatic 82x to 100x Patient/ family Validation Outcomes Phenotypes Clinical DNA GeCIP(s) & Pedigree assessment Gene Report -
MRCT Center Return of Individual Results to Participants Toolkit, Version 1.0 (Accessed At
MRCT Center Return of Individual Results to Participants Toolkit Framework Version 1.2 22 November 2017 Return of Individual Results Toolkit Table of Contents INTRODUCTION .............................................................................................................................................. 2 Figure 1: Clinical Trial Data Types That May be Returned ........................................................................ 3 Figure 2: Return of Individual Results Tasks and Tools by Trial Phase for Clinical Teams ......................... 4 1. TOOLS FOR THE TEAM PLANNING THE STUDY ....................................................................................... 5 Tool 1: Rationale Matrix for Returning Various Data Types ....................................................................... 5 Tool 2: Points to Consider Along the Clinical Trial Timeline ....................................................................... 9 Tool 3: Selected Return of Individual Results Regulations and Resources ............................................... 16 Return of Results implications Under HIPAA / CLIA ................................................................................. 18 Tool 4: Informed Consent Language for Return of Individual Results ...................................................... 20 2. TOOLS FOR INSTITUTIONAL REVIEW BOARDS/ETHICS COMMITTEES .................................................. 27 Tool 5: Checklist for Institutional Review Board (IRB) and Ethics Committees ...................................... -
Endocrine and Metabolism Detailed Research Plan
Genomics England Clinical Interpretation Partnership (GeCIP) Detailed Research Plan Form Application Summary GeCIP domain name Metabolic and Endocrine Disease Project title Whole genome sequencing to improve diagnosis and management of (max 150 characters) inherited metabolic and endocrine disorders Objectives. Set out the key objectives of your research. (max 200 words) Our major objectives are to use data from high-throughput whole genome sequencing to advance the understanding of the aetiology and heterogeneity of a range of important inherited metabolic and endocrine syndromes where full understanding is currently lacking. We will gain insights into disease mechanism and to novel therapeutic opportunities. Specific aims: 1. We will develop and implement bioinformatics algorithms and pipelines to categorise rare, severe inherited metabolic and endocrine disorders into homogeneous phenotypic groups. This will improve gene identification, assist genotype-phenotype correlations and future stratification prior to intervention studies. 2. We will identify novel causative genes and establish clinically useful risk scores to facilitate identification of novel disease genes, genetic risks and modifying factors to enable NHS diagnostic testing, prediction of disease onset, penetrance and clinical severity. 3. We will use our extensive experience in phenotyping in cellular and animal model systems to study disease mechanism. 4. We will recall and invite affected individuals for further deep metabolic and endocrine phenotyping to better understand how their diseases impact on their in vivo physiology. 5. We will use our extensive nexus of collaborative relations with the biotech and pharm industry to work together to develop novel approaches to therapy of these disorders. 6. We will work together with other GeCIPs and GMCs to train the next generation of scientists, technologists and clinicians in genomic medicine.