Protective Antigen Complexes with Increased Stability and Uses Thereof

Total Page:16

File Type:pdf, Size:1020Kb

Protective Antigen Complexes with Increased Stability and Uses Thereof I 1111111111111111 1111111111 1111111111 1111111111 11111 11111 lll111111111111111 US010188716B2 c12) United States Patent (IO) Patent No.: US 10,188,716 B2 Bann et al. (45) Date of Patent: Jan.29,2019 (54) PROTECTIVE ANTIGEN COMPLEXES Williams et al (Protein Science. 2009. 18: 2277-2286).* WITH INCREASED STABILITY AND USES Chadegani, Fatemeh, et al., F Nuclear Magnetic Resonance and THEREOF Crystallographic Studies of 5-Fluorotryptophan-Labeled Anthrax Protective Antigen and Effects of the Receptor on Stability, Copyright (71) Applicants:Wichita State University, Wichita, KS 2014 American Chemical Society, Open Access on Jan. 3, 2015, (US); Case Western Reserve Biochemistry 2014, 53, 690-701 (12 pages). University, Cleveland, OH (US) Wimalasena, D. Shyamili et al, Evidence That Histidine Protonation of Receptor-Bound Anthrax Protective Antigen is a Trigger for Pore (72) Inventors: James G. Bann, Wichita, KS (US); Formation, Biochemistry, 2010, 49 (33), pp. 6973-6983, DOI: Masaru Miyagi, Cleveland, OH (US) 10.1021/bil00647z, Publication Date (Web): Jul. 22, 2010, Copyright © 2010 American Chemical Society (11 pages). (73) Assignees: Wichita State University, Wichita, KS Rajapaksha, Maheshinie et al., pH effects on binding between the (US); Case Western Reserve anthrax protective antigen and the host cellular receptor CMG2, University, Cleveland, OH (US) Protein Science: A Publication ofthe Protein Society.2012;21( 10): 1467- 1480. doi: 10.1002/pro.2136 (14 pages). ( *) Notice: Subject to any disclaimer, the term ofthis Williams, Alexander S et al., Domain 4 of the anthrax protective patent is extended or adjusted under 35 antigen maintains structure and binding to the host receptor CMG2 U.S.C. 154(b) by O days. at low pH, Protein Science 2009, 18: 2277-2286. doi:10.1002/pro. 238, Aug. 31, 2009 (10 pages). (21) Appl. No.: 15/886,112 Hu, Lei et al., Comparison of the Structural Stability and Dynamic Properties of Recombinant Anthrax Protective Antigen and Its (22) Filed: Feb. 1, 2018 2-Fluorohistidine-LabeledAnalogue, Journal of Pharmaceutical Sci­ ences, vol. 101, No. 11, Nov. 2012, doi: 10.1002/jps.23294. Epub (65) Prior Publication Data Aug. 21, 2012 (11 pages). US 2018/0169208 Al Jun. 21, 2018 Mullangi, Vennela et al, Long-Range Stabilization of Anthrax Protective Antigen upon Binding to CMG2, Biochemistry, 2014, 53 Related U.S. Application Data (38), pp. 6084-6091, DOI: 10.1021/bi500718g, Publication Date (Web): Sep. 3, 2014 Copyright© 2014 American Chemical Society (62) Division of application No. 14/987,505, filed on Jan. (8 pages). 4, 2016. Zhang, Jeney et al., Stabilization of vaccines and antibiotics in silk (60) Provisional application No. 62/099,356, filed on Jan. and eliminating the cold chain, Proc Natl Acad Sci U SA. Jul. 24, 2, 2015. 2012; 109(30): 11981-11986. Published online Jul. 9, 2012. doi: 10.1073/pnas.1206210109 PMCID: PMC3409735 (6 pages). (51) Int. Cl. Office Action in corresponding U.S. Appl. No. 14/987,505, dated A61K 39/002 (2006.01) Nov. 8, 2017. A61K 39107 (2006.01) A61K 39/40 (2006.01) * cited by examiner A61K 45106 (2006.01) A61K 39/00 (2006.01) Primary Examiner - Jennifer E Graser (52) U.S. Cl. (74) Attorney, Agent, or Firm - Hovey Williams LLP CPC A61K 39107 (2013.01); A61K 39/40 (2013.01); A61K 45106 (2013.01); A61K (57) ABSTRACT 2039/6031 (2013.01); A61K 2039/622 Immunogenic compositions against Bacillus anthracis com­ (2013.01) prising a stabilized protective antigen complex are dis­ (58) Field of Classification Search closed. The stabilized complex comprises protective antigen None protein and capillary morphogenesis protein-2, with the See application file for complete search history. capillary morphogenesis protein-2 being bound to the pro­ tective antigen protein along a binding interface. The stabi­ (56) References Cited lized protective antigen complex has increased thermal and structural stability, along with resistance to premature pro­ U.S. PATENT DOCUMENTS teolytic degradation. Methods of using the same to induce an immunogenic response in a subject against B. anthracis 7,731,979 B2 6/2010 Bann infection are also disclosed. OTHER PUBLICATIONS 19 Claims, 11 Drawing Sheets (3 of 11 Drawing Sheet(s) Filed in Color) Rajapaksha et al (Protein Science. 2012. 21:1467-1480).* Mullangi et al (Biochemistry. 2014. 53: 6084-6091 ). * Specification includes a Sequence Listing. U.S. Patent Jan.29,2019 Sheet 1 of 11 US 10,188,716 B2 A so B 8000 -+.t- 5Hr* PA-280nm 0000 ,.....:;.-5FTro PA-'.!05nr, 4(/ ~WTPA __..., WT PA-2f,Cnm ~ ----·SFTrpPA ........_WTPA-29!inm 'S... .woo I 1 .,"' zooo ·e 30 s<.> "'<!I Z' <> 0 "' ~ ;fl t -toOO Iu.. % -4000 !ii; -imoo-----..... ___..._ ______, lW 340 SllO 350 400 420 440 1$1) 190 200 210 220 ~I) 2>W 2~0 200 W;,vel2no1h {llm) W«1el~lh tnmJ C 1~0 D eo ,. "' ~~SHrpPll.,,, 1$ 00 "' ... j ;!! ~ S; ,. ¥.., 150 <:l .,,<( "'g ~ ....... W-fPA ? • ,. l 50 n ~ E -!:>- :5FTfpf>A ;!! " ,!~" ~- w l3!'.I 1 ~t 140 ti> o' ;t~· ......... ➔ \ ~ ~ 3 <( ,u .. rn s,::: ia· 20. A. "'.. 3 :g .. ,: "- ! PA,, ~ } ;: ,., e· ti 40 z ~- ~ .. X ·;.. i • !::i 70 no m •;e 1$ ~: ~ z ~ j< . • s t $ "QI ... w • • "1 <O" ' 'lltM(M) ' ' :;> 1 "' t 1$ '<$ t2!l "' 30 wf 00. ? i U.S. Patent Jan.29,2019 Sheet 2 of 11 US 10,188,716 B2 A -42 -43 -44 -45 -46 -47 -48 -49 -50 ppm B ~ Unfolded ~ 7.2M 5.SM 4.0M 3.2 M 2.1 M 1.9M 1.3M 0.6M No urea -42 -48 ·49 -so ppm C PA03 3.2 M urea PA'° 3.2 M urea PA20 No urea ·42 .43 .44 -45 ··46 .47 -48 .49 -50 ppm Fig. 2 U.S. Patent Jan.29,2019 Sheet 3 of 11 US 10,188,716 B2 I I I -42 -43 -44 -45 -46 -47 -48 -49 -50 ppm / Trp206Tyr I I I I I I j I I I I I I I I I I I j I I j I I I I I ' I ' -42 -43 -44 -45 -46 -47 -48 -49 -50 ppm Fig. 3 U.S. Patent Jan.29,2019 Sheet 4 of 11 US 10,188,716 B2 A FTrp226 Fftp 477 •·• C Fig. 4 U.S. Patent Jan.29,2019 Sheet 5 of 11 US 10,188,716 B2 k--+TCEP ' i I , • I ' I , • ' ' j , ' ' ' I I ' ,44 ,45 ,46 ,47 ,43 Fig. 5 U.S. Patent Jan.29,2019 Sheet 6 of 11 US 10,188,716 B2 A ..,-unfolded pH 5 pH 5.5 pH6 pH 7 ✓ FTrp346 -42 -43 -44 -45 -46 -47 I -48 -j9 -so ppm B I pH8 i l I J I i I I I i i I I I I i I I I I i I I J I j J I » » j i I I I i I I I t i I I 1 I j J I I -42 -43 -44 -45 -46 -47 -48 -49 -50 ppm Fig. 6 U.S. Patent Jan.29,2019 Sheet 7 of 11 US 10,188,716 B2 Unfolded A I I j I I I I I I ~ I I I I I I • I I ' I I ' ' I I ' ' ' I I I I ' I I I I I I 11 ' ' I I I ' ' I -42 -43 -44 -4s -46 -47 -48 -4r -so ppm 1 B I FTrp346 +CMG2 i ( I t I I ' i I I I I I I I I I I j i I • I j ' I I j ' J I j j • I I I ' I I I I i I I I I I • -42 -43 -44 -45 -46 -47 -48 -49 -50 ppm Fig. 7 U.S. Patent Jan.29,2019 Sheet 8 of 11 US 10,188,716 B2 H86 H263 H336 (CMG2) Fig. 8 U.S. Patent Jan.29,2019 Sheet 9 of 11 US 10,188,716 B2 A) His211 B) His253 o.orn O.OiO 6 0.005 -.:.:: (WOO 0.000 0 2 3 4 5 0 2 3 4 5 Gdn-HC! (M) C) His336 D) His616 ,:: • 0.010 0.010 • 0000 O.®O ..,.,.,_,_:_,--,,--.,--,--,---,--.,..--..,---,--...,--..,...--, 0 2 3 4 5 0 2 3 4 5 Gdn-HCI {M} Gdn-HCl (M} Fig. 9 U.S. Patent Jan.29,2019 Sheet 10 of 11 US 10,188,716 B2 120 100 80 60 20 --------------------- 0 1 2 2.5 3 4 Gdn HCl (M) Fig.10 e• 00 • ~ ~ ~ ~ o.oo, (A) His86 .. (B) His263 (C) His304 /! C ~ • ... --.,.-•-,;:, = ,,...,-p-----c,·-·•0 0.03 / .d./~: ,,// 0.04 . ,,// 0.010 >" ..... 0.02 '7~ / l / /_,/ ~ :!::,. - '.E ~ .;,,; 'b ,/ ~ ? 0.02 ~ OJJ05 N 0.01 '"\,Ci .,,// N ~// ,;,/ .---,-··•-··'·····/''''.·· 0 o~ ___ o_ ... __ ......... ··" ~_,.. .... \,Ci 0.00 0.00 0.000-l I- 1----,---....--~--,-----,..---, 4 6 8 4 6 8 10 4 6 8 10 pH* pH* pH * rJJ ('D=­ 0.020 (E) His336 0.06 (F) His597 ('D..... _... 9 .... (D) His310 ,,..----~ ~,,_.,.,,. .... 0.02 , 0.015 , 0 0 ,,~;,,,"" . .... 0.04 , .... / I / ..... .... .-:--' 0.010 //. 9- 0 ~ /­ .... l ~ 0.01 ~/ E, f 5 !/0 .;,,; ;:,,:; 0.02 .:,,: 0.005 : . /,/ 9/ .. 0 • 0 ....l __..,...- • -?"'" 0.000 ~----.---•-•-s............... d s.--.---• 0.00 ~. r.,;_ g 0,001 t--_,....---,---.----.-------, I I 4 6 8 10 4 6 8 10 4 6 8' 10 "'""' pH* pf-I* pH * '"= 00"'""' 00 Fig. 11 ~ 0--,"'""' =N US 10,188,716 B2 1 2 PROTECTIVE ANTIGEN COMPLEXES metalloprotease that can kill macrophages or, at lower WITH INCREASED STABILITY AND USES concentrations, prevent macrophages from secreting cytok­ THEREOF ines, resulting in a compromised host immunity. PA is a channel forming polypeptide that allows entry of EF and LF CROSS-REFERENCE TO RELATED 5 across membranes into the cell, a step that is critical for the APPLICATIONS pathogenesis of anthrax.
Recommended publications
  • The Genetic Basis of Hyaline Fibromatosis Syndrome in Patients from a Consanguineous Background: a Case Series
    Youssefian et al. BMC Medical Genetics (2018) 19:87 https://doi.org/10.1186/s12881-018-0581-1 CASE REPORT Open Access The genetic basis of hyaline fibromatosis syndrome in patients from a consanguineous background: a case series Leila Youssefian1,4†, Hassan Vahidnezhad1,2†, Andrew Touati1,3†, Vahid Ziaee5†, Amir Hossein Saeidian1, Sara Pajouhanfar1, Sirous Zeinali2,6 and Jouni Uitto1* Abstract Background: Hyaline fibromatosis syndrome (HFS) is a rare heritable multi-systemic disorder with significant dermatologic manifestations. It is caused by mutations in ANTXR2, which encodes a transmembrane receptor involved in collagen VI regulation in the extracellular matrix. Over 40 mutations in the ANTXR2 gene have been associated with cases of HFS. Variable severity of the disorder in different patients has been proposed to be related to the specific mutations in these patients and their location within the gene. Case presentation: In this report, we describe four cases of HFS from consanguineous backgrounds. Genetic analysis identified a novel homozygous frameshift deletion c.969del (p.Ile323Metfs*14) in one case, the previously reported mutation c.134 T > C (p.Leu45Pro) in another case, and the recurrent homozygous frameshift mutation c.1073dup (p.Ala359Cysfs*13) in two cases. The epidemiology of this latter mutation is of particular interest, as it is a candidate for inhibition of nonsense-mediated mRNA decay. Haplotype analysis was performed to determine the origin of this mutation in this consanguineous cohort, which suggested that it may develop sporadically in different populations. Conclusions: This information provides insights on genotype-phenotype correlations, identifies a previously unreported mutation in ANTXR2, and improves the understanding of a recurrent mutation in HFS.
    [Show full text]
  • Two Novel Mutations in the ANTXR2 Gene in a Chinese Patient Suffering from Hyaline Fibromatosis Syndrome: a Case Report
    4004 MOLECULAR MEDICINE REPORTS 18: 4004-4008, 2018 Two novel mutations in the ANTXR2 gene in a Chinese patient suffering from hyaline fibromatosis syndrome: A case report YING GAO1, JINLI BAI2, JIANCAI WANG1 and XIAOYAN LIU1 Departments of 1Dermatology and 2Medical Genetics, Capital Institute of Pediatrics, Peking University Teaching Hospital, Beijing 100020, P.R. China Received October 30, 2017; Accepted March 14, 2018 DOI: 10.3892/mmr.2018.9421 Abstract. Hyaline fibromatosis syndrome (HFS; MIM 228600) Introduction is a rare autosomal recessive disorder characterized by the abnormal growth of hyalinized fibrous tissue at subcutaneous Hyaline fibromatosis syndrome (HFS; OMIM 228600), regions on the scalp, ears and neck. The disease is caused by previously termed juvenile hyaline fibromatosis (JHF) and either a homozygous or compound heterozygous mutation of infantile systemic hyalinosis (ISH), is a rare autosomal reces- the anthrax toxin receptor 2 (ANTXR2) gene. The present sive disorder. The disease is characterized by the abnormal study describes a patient with HFS confirmed by clinical growth of hyalinized fibrous tissue, which commonly affects examination as well as histopathological and genetic analyses. subcutaneous regions on the scalp, ears and neck (1). HFS is Numerous painless and variable‑sized subcutaneous nodules classified into different grades according to its clinical mani- were observed on the scalp, ear, trunk and four extremities festation, resulting from the involvement of different organs; of the patient. With increasing age, the number and size of symptoms may include persistent diarrhea and recurrent the nodules gradually increased in the patient. The patient pulmonary infections (2). HFS is caused by either a homo- additionally presented with severe gingival thickening and zygous or compound heterozygous mutation in the anthrax developed pearly papules on the ears, back and penis foreskin.
    [Show full text]
  • Viewed Graphically with a Java Graphical User Interface (GUI), Allowing Users to Evaluate Contig Sequence Quality and Predict Snps
    BMC Research Notes BioMed Central Short Report Open Access BEAP: The BLAST Extension and Alignment Program- a tool for contig construction and analysis of preliminary genome sequence James E Koltes†, Zhi-Liang Hu†, Eric Fritz and James M Reecy* Address: Department of Animal Science, Iowa State University, Ames, Iowa 50011-3150, USA Email: James E Koltes - [email protected]; Zhi-Liang Hu - [email protected]; Eric Fritz - [email protected]; James M Reecy* - [email protected] * Corresponding author †Equal contributors Published: 22 January 2009 Received: 29 October 2008 Accepted: 22 January 2009 BMC Research Notes 2009, 2:11 doi:10.1186/1756-0500-2-11 This article is available from: http://www.biomedcentral.com/1756-0500/2/11 © 2009 Reecy et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract Background: Fine-mapping projects require a high density of SNP markers and positional candidate gene sequences. In species with incomplete genomic sequence, the DNA sequences needed to generate markers for fine-mapping within a linkage analysis confidence interval may be available but may not have been assembled. To manually piece these sequences together is laborious and costly. Moreover, annotation and assembly of short, incomplete DNA sequences is time consuming and not always straightforward. Findings: We have created a tool called BEAP that combines BLAST and CAP3 to retrieve sequences and construct contigs for localized genomic regions in species with unfinished sequence drafts.
    [Show full text]
  • Diagnosis Implications of the Whole Genome Sequencing in a Large Lebanese Family with Hyaline Fibromatosis Syndrome
    Haidar et al. BMC Genetics (2017) 18:3 DOI 10.1186/s12863-017-0471-0 RESEARCHARTICLE Open Access Diagnosis implications of the whole genome sequencing in a large Lebanese family with hyaline fibromatosis syndrome Zahraa Haidar1, Ramzi Temanni2, Eliane Chouery1 , Puthen Jithesh2, Wei Liu3, Rashid Al-Ali2, Ena Wang3, Francesco M Marincola4, Nadine Jalkh1, Soha Haddad5, Wassim Haidar6, Lotfi Chouchane7 and André Mégarbané8* Abstract Background: Hyaline fibromatosis syndrome (HFS) is a recently introduced alternative term for two disorders that were previously known as juvenile hyaline fibromatosis (JHF) and infantile systemic hyalinosis (ISH). These two variants are secondary to mutations in the anthrax toxin receptor 2 gene (ANTXR2) located on chromosome 4q21. The main clinical features of both entities include papular and/or nodular skin lesions, gingival hyperplasia, joint contractures and osteolytic bone lesions that appear in the first few years of life, and the syndrome typically progresses with the appearance of new lesions. Methods: We describe five Lebanese patients from one family, aged between 28 and 58 years, and presenting with nodular and papular skin lesions, gingival hyperplasia, joint contractures and bone lesions. Because of the particular clinical features and the absence of a clinical diagnosis, Whole Genome Sequencing (WGS) was carried out on DNA samples from the proband and his parents. Results: A mutation in ANTXR2 (p. Gly116Val) that yielded a diagnosis of HFS was noted. Conclusions: The main goal of this paper is to add to the knowledge related to the clinical and radiographic aspects of HFS in adulthood and to show the importance of Next-Generation Sequencing (NGS) techniques in resolving such puzzling cases.
    [Show full text]
  • ANTXR2 Is a Potential Causative Gene in the Genome-Wide Association Study of the Blood Pressure Locus 4Q21
    Hypertension Research (2014) 37, 811–817 & 2014 The Japanese Society of Hypertension All rights reserved 0916-9636/14 www.nature.com/hr ORIGINAL ARTICLE ANTXR2 is a potential causative gene in the genome-wide association study of the blood pressure locus 4q21 So Yon Park1,Hyeon-JuLee1, Su-Min Ji1, Marina E Kim2, Baigalmaa Jigden3, Ji Eun Lim3 and Bermseok Oh1,2,3 Hypertension is the most prevalent cardiovascular disease worldwide, but its genetic basis is poorly understood. Recently, genome-wide association studies identified 33 genetic loci that are associated with blood pressure. However, it has been difficult to determine whether these loci are causative owing to the lack of functional analyses. Of these 33 genome-wide association studies (GWAS) loci, the 4q21 locus, known as the fibroblast growth factor 5 (FGF5) locus, has been linked to blood pressure in Asians and Europeans. Using a mouse model, we aimed to identify a causative gene in the 4q21 locus, in which four genes (anthrax toxin receptor 2 (ANTXR2), PR domain-containing 8 (PRDM8), FGF5 and chromosome 4 open reading frame 22 (C4orf22)) were near the lead single-nucleotide polymorphism (rs16998073). Initially, we examined Fgf5 gene by measuring blood pressure in Fgf5-knockout mice. However, blood pressure did not differ between Fgf5 knockout and wild-type mice. Therefore, the other candidate genes were studied by in vivo small interfering RNA (siRNA) silencing in mice. Antxr2 siRNA was pretreated with polyethylenimine and injected into mouse tail veins, causing a significant decrease in Antxr2 mRNA by 22% in the heart. Moreover, blood pressure measured under anesthesia in Antxr2 siRNA-injected mice rose significantly compared with that of the controls.
    [Show full text]
  • Identification of Significant Genes with Poor Prognosis in Ovarian Cancer Via Bioinformatical Analysis
    Feng et al. Journal of Ovarian Research (2019) 12:35 https://doi.org/10.1186/s13048-019-0508-2 RESEARCH Open Access Identification of significant genes with poor prognosis in ovarian cancer via bioinformatical analysis Hao Feng1†, Zhong-Yi Gu2†, Qin Li2, Qiong-Hua Liu3, Xiao-Yu Yang4* and Jun-Jie Zhang2* Abstract Ovarian cancer (OC) is the highest frequent malignant gynecologic tumor with very complicated pathogenesis. The purpose of the present academic work was to identify significant genes with poor outcome and their underlying mechanisms. Gene expression profiles of GSE36668, GSE14407 and GSE18520 were available from GEO database. There are 69 OC tissues and 26 normal tissues in the three profile datasets. Differentially expressed genes (DEGs) between OC tissues and normal ovarian (OV) tissues were picked out by GEO2R tool and Venn diagram software. Next, we made use of the Database for Annotation, Visualization and Integrated Discovery (DAVID) to analyze Kyoto Encyclopedia of Gene and Genome (KEGG) pathway and gene ontology (GO). Then protein-protein interaction (PPI) of these DEGs was visualized by Cytoscape with Search Tool for the Retrieval of Interacting Genes (STRING). There were total of 216 consistently expressed genes in the three datasets, including 110 up-regulated genes enriched in cell division, sister chromatid cohesion, mitotic nuclear division, regulation of cell cycle, protein localization to kinetochore, cell proliferation and Cell cycle, progesterone-mediated oocyte maturation and p53 signaling pathway, while 106 down-regulated genes enriched in palate development, blood coagulation, positive regulation of transcription from RNA polymerase II promoter, axonogenesis, receptor internalization, negative regulation of transcription from RNA polymerase II promoter and no significant signaling pathways.
    [Show full text]
  • Cancer Sequencing Service Data File Formats File Format V2.4 Software V2.4 December 2012
    Cancer Sequencing Service Data File Formats File format v2.4 Software v2.4 December 2012 CGA Tools, cPAL, and DNB are trademarks of Complete Genomics, Inc. in the US and certain other countries. All other trademarks are the property of their respective owners. Disclaimer of Warranties. COMPLETE GENOMICS, INC. PROVIDES THESE DATA IN GOOD FAITH TO THE RECIPIENT “AS IS.” COMPLETE GENOMICS, INC. MAKES NO REPRESENTATION OR WARRANTY, EXPRESS OR IMPLIED, INCLUDING WITHOUT LIMITATION ANY IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE OR USE, OR ANY OTHER STATUTORY WARRANTY. COMPLETE GENOMICS, INC. ASSUMES NO LEGAL LIABILITY OR RESPONSIBILITY FOR ANY PURPOSE FOR WHICH THE DATA ARE USED. Any permitted redistribution of the data should carry the Disclaimer of Warranties provided above. Data file formats are expected to evolve over time. Backward compatibility of any new file format is not guaranteed. Complete Genomics data is for Research Use Only and not for use in the treatment or diagnosis of any human subject. Information, descriptions and specifications in this publication are subject to change without notice. Copyright © 2011-2012 Complete Genomics Incorporated. All rights reserved. RM_DFFCS_2.4-01 Table of Contents Table of Contents Preface ...........................................................................................................................................................................................1 Conventions .................................................................................................................................................................................................
    [Show full text]
  • ANTXR2 Gene ANTXR Cell Adhesion Molecule 2
    ANTXR2 gene ANTXR cell adhesion molecule 2 Normal Function The ANTXR2 gene provides instructions for making a protein that is found at the surface of many types of cells. The ANTXR2 protein is believed to interact with components of the extracellular matrix, which is the lattice of proteins and other molecules outside the cell. This matrix strengthens and supports connective tissues, such as skin, bone, cartilage, tendons, and ligaments. The ANTXR2 protein is involved in the formation of tiny blood vessels (capillaries). It may also be important for maintaining the structure of basement membranes, which are thin, sheet-like extracellular matrix structures that separate and support cells in many connective tissues. Research suggests that the ANTXR2 protein aids in the breakdown of at least one type of extracellular matrix protein, ensuring the correct balance of proteins is maintained for normal functioning of muscles and connective tissues. The ANTXR2 protein also acts as a receptor for the toxin that causes anthrax, allowing the toxin to attach to cells and trigger disease. Health Conditions Related to Genetic Changes Hyaline fibromatosis syndrome More than 45 mutations in the ANTXR2 gene have been found to cause hyaline fibromatosis syndrome, a painful condition characterized by accumulation of a clear ( hyaline) substance in different tissues in the body. The nature of the hyaline substance is unknown, but it likely contains extracellular matrix proteins, among other materials. Buildup of this material can cause firm lumps of noncancerous tissue (nodules) under the skin and in internal organs, joint deformities called contractures that restrict movement, and overgrowth of the gums.
    [Show full text]
  • Entrez ID Gene Name Fold Change Q-Value Description
    Entrez ID gene name fold change q-value description 4283 CXCL9 -7.25 5.28E-05 chemokine (C-X-C motif) ligand 9 3627 CXCL10 -6.88 6.58E-05 chemokine (C-X-C motif) ligand 10 6373 CXCL11 -5.65 3.69E-04 chemokine (C-X-C motif) ligand 11 405753 DUOXA2 -3.97 3.05E-06 dual oxidase maturation factor 2 4843 NOS2 -3.62 5.43E-03 nitric oxide synthase 2, inducible 50506 DUOX2 -3.24 5.01E-06 dual oxidase 2 6355 CCL8 -3.07 3.67E-03 chemokine (C-C motif) ligand 8 10964 IFI44L -3.06 4.43E-04 interferon-induced protein 44-like 115362 GBP5 -2.94 6.83E-04 guanylate binding protein 5 3620 IDO1 -2.91 5.65E-06 indoleamine 2,3-dioxygenase 1 8519 IFITM1 -2.67 5.65E-06 interferon induced transmembrane protein 1 3433 IFIT2 -2.61 2.28E-03 interferon-induced protein with tetratricopeptide repeats 2 54898 ELOVL2 -2.61 4.38E-07 ELOVL fatty acid elongase 2 2892 GRIA3 -2.60 3.06E-05 glutamate receptor, ionotropic, AMPA 3 6376 CX3CL1 -2.57 4.43E-04 chemokine (C-X3-C motif) ligand 1 7098 TLR3 -2.55 5.76E-06 toll-like receptor 3 79689 STEAP4 -2.50 8.35E-05 STEAP family member 4 3434 IFIT1 -2.48 2.64E-03 interferon-induced protein with tetratricopeptide repeats 1 4321 MMP12 -2.45 2.30E-04 matrix metallopeptidase 12 (macrophage elastase) 10826 FAXDC2 -2.42 5.01E-06 fatty acid hydroxylase domain containing 2 8626 TP63 -2.41 2.02E-05 tumor protein p63 64577 ALDH8A1 -2.41 6.05E-06 aldehyde dehydrogenase 8 family, member A1 8740 TNFSF14 -2.40 6.35E-05 tumor necrosis factor (ligand) superfamily, member 14 10417 SPON2 -2.39 2.46E-06 spondin 2, extracellular matrix protein 3437
    [Show full text]
  • The Structure, Function and Evolution of the Extracellular Matrix: a Systems-Level Analysis
    The Structure, Function and Evolution of the Extracellular Matrix: A Systems-Level Analysis by Graham L. Cromar A thesis submitted in conformity with the requirements for the degree of Doctor of Philosophy Department of Molecular Genetics University of Toronto © Copyright by Graham L. Cromar 2014 ii The Structure, Function and Evolution of the Extracellular Matrix: A Systems-Level Analysis Graham L. Cromar Doctor of Philosophy Department of Molecular Genetics University of Toronto 2014 Abstract The extracellular matrix (ECM) is a three-dimensional meshwork of proteins, proteoglycans and polysaccharides imparting structure and mechanical stability to tissues. ECM dysfunction has been implicated in a number of debilitating conditions including cancer, atherosclerosis, asthma, fibrosis and arthritis. Identifying the components that comprise the ECM and understanding how they are organised within the matrix is key to uncovering its role in health and disease. This study defines a rigorous protocol for the rapid categorization of proteins comprising a biological system. Beginning with over 2000 candidate extracellular proteins, 357 core ECM genes and 524 functionally related (non-ECM) genes are identified. A network of high quality protein-protein interactions constructed from these core genes reveals the ECM is organised into biologically relevant functional modules whose components exhibit a mosaic of expression and conservation patterns. This suggests module innovations were widespread and evolved in parallel to convey tissue specific functionality on otherwise broadly expressed modules. Phylogenetic profiles of ECM proteins highlight components restricted and/or expanded in metazoans, vertebrates and mammals, indicating taxon-specific tissue innovations. Modules enriched for medical subject headings illustrate the potential for systems based analyses to predict new functional and disease associations on the basis of network topology.
    [Show full text]
  • Ankylosing Spondylitis Is Associated with the Anthrax Toxin Receptor 2 Gene
    ARD Online First, published on August 28, 2014 as 10.1136/annrheumdis-2014-205643 Basic and translational research Ann Rheum Dis: first published as 10.1136/annrheumdis-2014-205643 on 28 August 2014. Downloaded from CONCISE REPORT Ankylosing spondylitis is associated with the anthrax toxin receptor 2 gene (ANTXR2) T Karaderi,1 S M Keidel,1 J J Pointon,1 L H Appleton,2 M A Brown,3 D M Evans,3,4 B P Wordsworth1,2 Handling editor Tore K Kvien ABSTRACT suggestive association with AS in two previous 1National Institute for Health Objectives ANTXR2 variants have been associated genome-wide association studies (GWAS). In 2010, Research Oxford with ankylosing spondylitis (AS) in two previous the Triple A Australo-Anglo-American − Comprehensive Biomedical genome-wide association studies (GWAS) (p∼9×10 8). Spondyloarthritis Consortium (TASC) reported Research Centre, University of However, a genome-wide significant association association with the intronic SNP, rs4333130 Oxford, Oxford, UK −8 −8 7 2National Institute for Health (p<5×10 ) was not observed. We conducted a more (p=9.3×10 ) ; and in 2011, the Wellcome Trust Research Oxford comprehensive analysis of ANTXR2 in an independent Case Control Consortium 2 (WTCCC2) showed Musculoskeletal Biomedical UK sample to confirm and refine this association. an association with rs4389526 (meta-analysis − Research Unit, University of Methods A replication study was carried out with p=9.4×10 8).6 In neither study did the evidence Oxford, Oxford, UK 3 2978 cases and 8365 controls. Then, these were for association reach the threshold for genome- University of Queensland −8 Diamantina Institute, combined with non-overlapping samples from the two wide significance (p<5×10 ).
    [Show full text]
  • Transcriptional Profile of Human Anti-Inflamatory Macrophages Under Homeostatic, Activating and Pathological Conditions
    UNIVERSIDAD COMPLUTENSE DE MADRID FACULTAD DE CIENCIAS QUÍMICAS Departamento de Bioquímica y Biología Molecular I TESIS DOCTORAL Transcriptional profile of human anti-inflamatory macrophages under homeostatic, activating and pathological conditions Perfil transcripcional de macrófagos antiinflamatorios humanos en condiciones de homeostasis, activación y patológicas MEMORIA PARA OPTAR AL GRADO DE DOCTOR PRESENTADA POR Víctor Delgado Cuevas Directores María Marta Escribese Alonso Ángel Luís Corbí López Madrid, 2017 © Víctor Delgado Cuevas, 2016 Universidad Complutense de Madrid Facultad de Ciencias Químicas Dpto. de Bioquímica y Biología Molecular I TRANSCRIPTIONAL PROFILE OF HUMAN ANTI-INFLAMMATORY MACROPHAGES UNDER HOMEOSTATIC, ACTIVATING AND PATHOLOGICAL CONDITIONS Perfil transcripcional de macrófagos antiinflamatorios humanos en condiciones de homeostasis, activación y patológicas. Víctor Delgado Cuevas Tesis Doctoral Madrid 2016 Universidad Complutense de Madrid Facultad de Ciencias Químicas Dpto. de Bioquímica y Biología Molecular I TRANSCRIPTIONAL PROFILE OF HUMAN ANTI-INFLAMMATORY MACROPHAGES UNDER HOMEOSTATIC, ACTIVATING AND PATHOLOGICAL CONDITIONS Perfil transcripcional de macrófagos antiinflamatorios humanos en condiciones de homeostasis, activación y patológicas. Este trabajo ha sido realizado por Víctor Delgado Cuevas para optar al grado de Doctor en el Centro de Investigaciones Biológicas de Madrid (CSIC), bajo la dirección de la Dra. María Marta Escribese Alonso y el Dr. Ángel Luís Corbí López Fdo. Dra. María Marta Escribese
    [Show full text]