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Bibliography Bibliography Abella, C.A., X.P. Cristina, A. Martinez, I. Pibernat and X. Vila. 1998. on moderate concentrations of acetate: production of single cells. Two new motile phototrophic consortia: "Chlorochromatium lunatum" Appl. Microbiol. Biotechnol. 35: 686-689. and "Pelochromatium selenoides". Arch. Microbiol. 169: 452-459. Ahring, B.K, P. Westermann and RA. Mah. 1991b. Hydrogen inhibition Abella, C.A and LJ. Garcia-Gil. 1992. Microbial ecology of planktonic of acetate metabolism and kinetics of hydrogen consumption by Me­ filamentous phototrophic bacteria in holomictic freshwater lakes. Hy­ thanosarcina thermophila TM-I. Arch. Microbiol. 157: 38-42. drobiologia 243-244: 79-86. Ainsworth, G.C. and P.H.A Sheath. 1962. Microbial Classification: Ap­ Acca, M., M. Bocchetta, E. Ceccarelli, R Creti, KO. Stetter and P. Cam­ pendix I. Symp. Soc. Gen. Microbiol. 12: 456-463. marano. 1994. Updating mass and composition of archaeal and bac­ Alam, M. and D. Oesterhelt. 1984. Morphology, function and isolation terial ribosomes. Archaeal-like features of ribosomes from the deep­ of halobacterial flagella. ]. Mol. Biol. 176: 459-476. branching bacterium Aquifex pyrophilus. Syst. Appl. Microbiol. 16: 629- Albertano, P. and L. Kovacik. 1994. Is the genus LeptolynglYya (Cyano­ 637. phyte) a homogeneous taxon? Arch. Hydrobiol. Suppl. 105: 37-51. Achenbach-Richter, L., R Gupta, KO. Stetter and C.R Woese. 1987. Were Aldrich, H.C., D.B. Beimborn and P. Schönheit. 1987. Creation of arti­ the original eubacteria thermophiles? Syst. Appl. Microbiol. 9: 34- factual internal membranes during fixation of Methanobacterium ther­ 39. moautotrophicum. Can.]. Microbiol. 33: 844-849. Adams, D.G., D. Ashworth and B. Nelmes. 1999. Fibrillar array in the Alfredsson, G.A, S. Baldursson and].K Krisgänsson. 1985. Nutritional cell wall of a gliding filamentous cyanobacterium.]. Bacteriol. 181: diversity among Thermus spp. isolated from Icelandic hot springs. Syst. 884-892. Appl. Microbiol. 6: 308-311. Adams, D.G. and N.G. Carr. 1981. The developmental biology of het­ Alfredsson, G.A. and].K Krisgänsson. 1995. Ecology, distribution, and erocyst and akinete formation in cyanobacteria. CRC Crit. Rev. Mi­ isolation of Thermus. In Sharp and Williams (Editors), ThermusSpecies, crobiol. 9: 45-100. Plenum Press, New York. pp. 43-66. Adams, M.W. and A Kletzin. 1996. Oxidoreductase-type enzymes and Alfreider, A,]. Pernthaler, RI. Arnann, B. Sattler, F.O. Glöckner, A Wille redox pro teins involved in fermentative metabolisms of hyperther­ and R Psenner. 1996. Community analysis of the bacterial assem­ mophilie archaea. InAdams (Editor), Advances in Protein Chemistry, blages in the winter cover and pelagic layers of a high Mountain Lake Vol. 48: Enzymes and Proteins from Hyperthermophilie Microorgan­ by in situ hybridization. Appl. Environ. Microbiol. 62: 2138-2144. isms, Academic Press, San Diego. pp. 101-180. Allen, M.B. 1959. Studies with Cyanidium caldarium an anomalously pig­ Adkins, ].P., M.T. Madigan, L. Mandelco, C.R Woese and RS. Tanner. mented chlorophyte. Arch. Mikrobiol. 32: 270-277. 1993. Arhodomonas aquaeolei gen. nov., sp. nov., an aerobic, halophilic Allison, F.E., S.R Hoover and HJ. Morris. 1937. Physiological studies bacterium isolated from a subterranean brine. Int.]. Syst. Bacteriol. with the nitrogen-fixing alga Nostoc muscorum. Bot. Gaz. 98: 433-463. 43: 514-520. Allison, MJ., W.R Mayberry, C.S. McSweeney and D.A Stahl. 1992. Sy­ Adnan, S., N. Li, H. Miura, Y. Hashimoto, H. Yamamoto and T. Ezaki. nergistes jonesii, gen. nov., sp. nov.: a rumen bacterium that degrades 1993. Covalent!y immobilized DNA plate for luminometric DNA-DNA toxic pyridinediols. System. Appl. Microbiol. 15: 522-529. hybridization to identity viridans streptococci in under 2 hours. FEMS Allison, MJ., W.R Mayberry, C.S. McSweeney and D.A Stahl. 1993. In Microbiol. Lett. 106: 139-142. Validation of the publication of new names and new combinations Ado, Y., T. Kawamoto, I. Masunaga, K Takayama, S. Takasawa and K previously effectively published outside the IJSB. List No. 45. Int. ]. Kimura. 1982. Production of I-malic acid with immobilized ther­ Syst. Bacteriol. 43: 398. mophilie bacterium Thermus rubens sp. nov. Enzyme Eng. 6: 303-310. Alm, E.W., D.B. Oerther, N. Larsen, D.A. Stahl and L. Raskin. 1996. The Adolph, KW. and R Haselkorn. 1971. Isolation and characterization of oligonucleotide probe database. Appl. Environ. Microbiol. 62: 3557- a virus infecting the blue-green alga Nostoc muscorum. Virology 46: 3559. 200-208. Almassy, RJ. and RE. Dickerson. 1978. Pseudomonas cytochrome C551 at Aeckersberg, F., F.A. Rainey and F. Widdel. 1998. Growth, natural rela­ 2.0 Aresolution: enlargement of the cytochrome c family. Proc. Nat!. tionships, cellular fatty acids and metabolie adaptation of sulfate-re­ Acad. Sei. U.S.A. 75: 2674-2678. ducing bacteria that utilize long-chain alkanes under anoxie condi­ Altekar, W. and R Rajagopalan. 1990. Ribulose bisphosphate carboxylase tions. Arch. Microbiol. 170: 361-369. activity in halophilic Archaebacteria. Arch. Microbiol. 153: 169-174. Agardh, C.A. 1824. SystemaAlgarum, Litteris Berlingianis, Lund, Sweden. Arnann, RI. 1995a. Fluorescent!y labeled, rRNA-targeted oligonucleotide Ahlgren, G. 1985. Growth of Oscillatoria agardhii in chernostat culture: 3. probes in the study of microbial ecology. Mol. Ecol. 4: 543-554. Simultaneous limitation of nitrogen and phosphorus. Br. Phycol.]. Arnann, RI. 1995b. In situ identification of micro-Drganisms by whole 20: 249-262. cell hybridization with rRNA-targeted nucleic acid probes. In Akker­ Ahmann, D., AL. Roberts, L.R Krumholz and F.M. Morel. 1994. Microbe mans, van Elsas and de Bruijn (Editors), Molecular Microbial Ecology grows by reducing arsenic. Nature 371: 750. Manual, Vol. 3.3.6, Kluwer Academic Publishers, Dordrecht. pp. 1- Ahring, B.K, F. Alatriste-Mondragon, P. Westermann and R.A. Mah. 15. 1991a. Effects of cations on Methanosarcina thermophila TM-l growing Arnann, RI., BJ. Binder, RJ. Olson, S.W. Chisholm, R Devereux and 639 640 BIBLIOGRAPHY D.A. Stahl. 1990a. Combination ofl6S rRNA-targeted oligonucleotide Purification and structural characterization of the thermosome from probes with flow cytometry for analyzing mixed mierobial popula­ the hyperthermophilie archaeum Methanopyrus kandleri. FEBS Lett. tions. Appl. Environ. Microbiol. 56: 1919-1925. 379: 127-131. Amann, R1., L. Krumholz and D.A. Stahl. 1990b. Fluorescent-oligonu­ Andrews, KT. and B.KC. Patel. 1996. Fervidobacterium gondwanense sp. cleotide probing of whole cells for determinative, phylogenetic, and nov., a new thermophilie anaerobic bacterium isolated from nonvol­ environmental studies in mierobiology.]. Bacteriol. 172: 762-770. canically heated geothermal waters of the Great Artesian Basin of Amann, R.1. and M. Kühl. 1998. In situ methods for assessment of mi­ Australia. Int.]. Syst. Bacteriol. 46: 265-269. croorganisms and their activities. Curr. Opin. Microbiol. 1: 352-358. Angelidaki, 1., S.P. Petersen and B.K Ahring. 1990. Effects of lipids on Amann, R1., W. Ludwig and KH. Schleifer. 1994. Identification of un­ thermophilie anaerobic digestion and reduction of lipid inhibition cultured bacteria: achallenging task for molecular taxonomists. ASM upon addition of bentonite. Appl. Microbiol. Biotechnol. 33: 469- News 60: 360-365. 472. Amann, R1., W. Ludwig and KH. Schleifer. 1995. Phylogenetic identi­ Angert, E.R, KD. Clements and N.R Pace. 1993. The largest bacterium. fication and in situ detection of individual mierobial cells without Nature 362: 239-241. cultivation. Mierobiol. Rev. 59: 143-169. Antoine, E., V. Cilia, ].R. Meunier,]. Guezennec, F. Lesongeur and G. Amann, RI., W. Ludwig, R. Schulze, S. Spring, E. Moore and KH. Schlei­ Barbier. 1997. Thermosipho melanesiensis sp. nov., a new thermophilie fer. 1996a. rRNA-targeted oligonucleotide probes for the identifica­ anaerobic bacterium belonging to the order Thermotogales, isolated tion of genuine and former pseudomonads. Syst. Appl. Microbiol. from deep-sea hydro thermal vents in the Southwestern Pacific Ocean. 19: 501-509. Int.]. Syst. Bacteriol. 47: 1118-1123. Amann, R.I.,]. Snaidr, M. Wagner, W. Ludwig and KH. Schleifer. 1996b. Anton,]., R Amils, c.L. Smith and P. L6pez-Garc1a. 1995. Comparative In situ visualization of high genetic diversity in a natural mierobial restrietion maps of the archaeal megaplasmid pHM300 in different community.]. Bacteriol. 178: 3496-3500. Haloferax mediterranei strains. Syst. Appl. Microbiol. 18: 439-447. Amann, RI., N. Springer, W. Ludwig, H.-D. Görtz and KH. Schleifer. Apolinario, E.A. and KR Sowers. 1996. Plate colonization of Methano­ 1991. Identification in situ and phylogeny of uncultured bacterial coccus maripaludis and Methanosarcina thermophila in a modified can­ endosymbionts. Nature 351: 161-164. ning jar. FEMS Microbiol. Lett. 145: 131-137. Amann, RI.,]. Stromley, R Devereux, R. Key and D.A. Stahl. 1992a. Arahai, D.R, F.E. Dewhirst, BJ. Paster, B.E. Volcani and A. Ventosa. 1996. Molecular and microseopie identification of sulfate-redueing bacteria Phylogenetic analyses of some extremely halophilic archaea isolated in multispeeies biofilms. Appl. Environ. Microbiol. 58: 614-623. from Dead Sea water, determined on the basis of their 16S rRNA Amann, RI., B. Zarda, D.A. Stahl and KH. Schleifer. 1992b. Identification sequences. Appl. Environ. Microbiol. 62: 3779-3786. of individual prokaryotic cells by using enzyme-Iabeled, rRNA- tar­ Aranki, A. and R Freter. 1972. Use of anaerobic glove boxes for the geted oligonucleotide probes.
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