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Characterization and Antibiotic Sensitivity Profile of Bacteria Isolated from Patients with Respiratory Tract Infections in Bangladesh
Characterization and Antibiotic Sensitivity Profile of Bacteria Isolated from Patients with Respiratory Tract Infections in Bangladesh Shukla Promite1, Sajal K. Saha2, Sunjukta Ahsan1 and Marufa Zerin Akhter1 1Department of Microbiology, University of Dhaka, Dhaka, Bangladesh 2Department of General Practice, Monash University, Building 1, 270 Ferntree Gully Road, Notting Hill VIC 3168, Australia (Received: October 08, 2017; Accepted: December 15, 2017; Published (web): December 23, 2017) ABSTRACT: The study was aimed to characterize bacterial isolates from respiratory tract infections (RTI) and investigate their antibiotic sensitivity profile. Selective media and biochemical tests were used to characterize 40 bacterial isolates. Antibiotic sensitivity testing was conducted using Kirby-Bauer disc diffusion method. About 42.5% (17) RTI patients were infected by Klebsiella pneumoniae, 30% (12) by Escherichia coli and 27.5% (11) by Pseudomonas aeruginosa with no significant gender variation (p-value <0.578). Overall, 47% (out of 20) antibiotics were sensitive, whereas 48% were resistant. Surprisingly, 18% P. aeruginosa and 20% K. pneumoniae were carbapenem-resistant and 4 out of 7 cephalosporin antibiotics were highly resistant irrespective of pathogens. E. coli showed better sensitivity to nitrofurantoin (78%) and levofloxacin (89%), while K. pneumoniae was insensitive to cotrimoxazole (88%), gentamycin (77%) and piperacillin/tazobactam (66%). On the other hand, P. aeruginosa did not respond to P. aeruginosa to nalidixic acid (60%) and ciprofloxacin (60%). This study concludes that nitrofurantoin, levofloxacin, cotrimoxazole, gentamycin and piperacillin/tazobactam antibiotics could be better alternative in treating bacterial RTIs. Key words: Antibiotic sensitivity, bacterial pathogens, RTIs, Bangladesh. INTRODUCTION Antibiotic resistance (AR) is a global public The rise of AR in Bangladesh is probably due to 1 health concern. -
Catalase Test: Lab-3380
Standard Operating Procedure Subject Catalase Test Index Number Lab-3380 Section Laboratory Subsection Microbiology Category Departmental Contact Sarah Stoner Last Revised 9/18/2019 References Required document for Laboratory Accreditation by the College of American Pathologists (CAP), Centers for Medicare and Medicaid Services (CMS) and/or COLA. Applicable To Employees of Gundersen Health System Laboratory, Gundersen Tri-County, Gundersen St. Joseph, Gundersen Boscobel Hospital, and Gundersen Palmer Lutheran Hospital Laboratories. Detail PRINCIPLE: The breakdown of hydrogen peroxide into oxygen and water is mediated by the enzyme catalase. When a small amount of an organism that produces catalase is introduced into hydrogen peroxide, rapid elaboration of bubbles of oxygen, the gaseous product of the enzyme’s activity, is produced. CLINICAL SIGNIFICANCE: This test is used as an aid in distinguishing between Staphylococci and Streptococci. All members of the genus Staphylococcus are catalase (+), where as members of the genus Streptococcus are catalase (-). Listeria monocytogenes {catalase (+)} can be distinguished from beta-hemolytic streptococcus {catalase (-)}. Most Neisseria sp. are catalase (+). Catalase can also help distinguish Bacillus sp. {catalase (+)} from Clostridum sp. {mostly catalase (-)}. SPECIMEN: Isolates preferably grown on non-blood containing media not older than 24 hours old. REAGENTS AND MATERIALS: 1. 3% hydrogen peroxide (from stock bottle). Store 2o – 25o C. Do not freeze or overheat. Light sensitive, store in brown bottle. 2. Clean microscope slide or glass test tube 3. Wooden applicator stick EQUIPMENT/INSTRUMENTATION: N/A QUALITY CONTROL: Each new lot and shipment or once a month, perform QC on reagent with stock organisms of S aureus (positive) and Beta strep group A (negative). -
Asymptomatic Bacteriuria Amongst the Inhabitants of Okigwe, Imo State Nigeria
Nigerian Journal of Microbiology, Vol. 22(1): 16 30 – 1633 2008 Asymptomatic Bacteriuria Amongst the Inhabitants of Okigwe, Imo State Nigeria *Ugbogu, O.C and Enya, V. N Department of Microbiology, Abia State University, Uturu, Nigeria. Abstract The prevalence of asymptomatic bacteriuria amongst the inhabitants of Okigwe was investigated using culture techniques. The predominant bacteria isolated were Escherichia coli , Staphylococcus aureus , Klebsiella species, Pseudomonas aeruginosa and Proteus species. Out of the 120 urine samples examined 20.8% had asymptomatic bacteriuria. The percentage prevalence was 17.7% and 22.5% for males and females examined respectively. Escherichia coli was the most prevalent occurring in 18.2% of the samples while Klebsiella species and Proteus species that both occurred in 5% of the positive samples were the least. Traders were more affected than students and civil servants. There is need to encourage people to screen for asymptomatic bacteriuria in other to avert the consequences of the subsequent complications. Keywords: bacteriuria, occupation, prevalence, symptom. *Corresponding author; E-mail; [email protected] phone 07084159395 Introduction Materials and methods Normally urine and the urinary tract Population studied : above the entrance to the bladder are essentially The population for this study was a free of microorganisms (Nester et al ., 2004). randomly selected group of 120 aparently Bacteriuria is a condition in which bacteria are healthy individuals that were either students, present in urine. Asymptomatic bacteriuria is traders or civil servants in Okigwe. The study defined as significant bacteriuria when growth of population were of various age groups ranging ≥ 10 5 cfu/ml of freshly voided urine (Umeh et from 16 to 45 years. -
Mass Spectrometry-Based Microbiological Testing for Blood
Nomura et al. Clin Proteom (2020) 17:14 https://doi.org/10.1186/s12014-020-09278-7 Clinical Proteomics REVIEW Open Access Mass spectrometry-based microbiological testing for blood stream infection Fumio Nomura1* , Sachio Tsuchida1, Syota Murata2, Mamoru Satoh1 and Kazuyuki Matsushita2 Abstract Background: The most successful application of mass spectrometry (MS) in laboratory medicine is identifcation (ID) of microorganisms using matrix-assisted laser desorption ionization–time of fight mass spectrometry (MALDI-TOF MS) in blood stream infection. We describe MALDI-TOF MS-based bacterial ID with particular emphasis on the methods so far developed to directly identify microorganisms from positive blood culture bottles with MALDI-TOF MS including our own protocols. We touch upon the increasing roles of Liquid chromatography (LC) coupled with tandem mass spectrometry (MS/MS) as well. Main body: Because blood culture bottles contain a variety of nonbacterial proteins that may interfere with analysis and interpretation, appropriate pretreatments are prerequisites for successful ID. Pretreatments include purifcation of bacterial pellets and short-term subcultures to form microcolonies prior to MALDI-TOF MS analysis. Three commercial protocols are currently available: the Sepsityper® kit (Bruker Daltonics), the Vitek MS blood culture kit (bioMerieux, Inc.), and the rapid BACpro® II kit (Nittobo Medical Co., Tokyo). Because these commercially available kits are costly and bacterial ID rates using these kits are not satisfactory, particularly for Gram-positive bacteria, various home-brew protocols have been developed: 1. Stepwise diferential sedimentation of blood cells and microorganisms, 2. Combi- nation of centrifugation and lysis procedures, 3. Lysis-vacuum fltration, and 4. Centrifugation and membrane fltra- tion technique (CMFT). -
Helicobacter Pylori Infections: Culture from Stomach Biopsy, Rapid Urease Test (Cutest®), and Histologic Examination of Gastric Biopsy
Available online at www.annclinlabsci.org 148 Annals of Clinical & Laboratory Science, vol. 45, no. 2, 2015 An Efficiency Comparison between Three Invasive Methods for the Diagnosis of Helicobacter pylori Infections: Culture from Stomach Biopsy, Rapid Urease Test (CUTest®), and Histologic Examination of Gastric Biopsy Avi Peretz1, Avi On 2, Anna Koifman1, Diana Brodsky1, Natlya Isakovich1, Tatyana Glyatman1, and Maya Paritsky3 1Clinical Microbiology Laboratory, 2Pediatric Gastrointestinal Unit, and 3Gastrointestinal Unit, Baruch Padeh Medical Center, Poria, affiliated to the Faculty of Medicine, Bar Ilan University, Galille, Israel Abstract. Background. Helicobacter pylori is one of the most prevalent pathogenic bacteria in the world, and humans are its principal reservoir. There are several available methods to diagnose H. pylori infection. Disagreement exists as to the best and most efficient method for diagnosis. Methods. In this paper, we report the results of a comparison between three invasive methods for H. pylori diagnosis among 193 pa- tients: culture, biopsy for histologic examination, and rapid urease test (CUTest®). Results. We found that all three methods have a high sensitivity and specificity for the diagnosis of infections caused by H. pylori. However, the culture method, which is not used routinely, also showed high sensitivity, probably due to biopsies’ seeding within 30 minutes, using warm culture media, non-selective media, and longer incuba- tion. Conclusions. Although not a routine test, culture from biopsy can be meaningful in identification of antibiotic-resistant strains of H. pylori and should therefore be considered a useful diagnostic tool. Keywords: Helicobacter pylor, Culture, Urease test, Gastric biopsy. Introduction Helicobacter pylori is one of the most prevalent Recently, a close association was found between H. -
Gram Stain Workshop for the Laboratory Generalist
Gram Stain Workshop for the Laboratory Generalist Karen Stiles, SM(ASCP)CM State Training Coordinator Assistant Chemical Terrorism Coordinator Nebraska Public Health Laboratory 402-559-3590 [email protected] 1 GRAM STAIN OBJECTIVES: Upon completion, the participant will be able to: 1. Explain the principle of the Gram stain procedure, including what elements can affect staining results 2. Correlate the most common pathogens with positive Gram stains from blood cultures and direct specimen sterile body fluid smears 3. Perform and interpret Grams stains 2 Purpose of Gram Stain Classify bacteria based on form, size, cellular morphology, Gram reaction Assess quality of specimen Identify specific infectious agent from morphology and Gram reaction Correlation with culture growth Correlation with culture-independent methodologist Guide presumptive antibiotic therapy 3 Principle of Gram Stain Cell wall composition Gram positive – think peptidoglycan layer with teichoic acid Gram negative – high in lipid content Basic premise Crystal Violet – all cells take up primary stain Gram’s iodine – mordant to form complex Decolorizer – mixture of acetone and alcohol Dehydrate lipids in Gram negative cell walls, wash out complex Gram positive cells resistant, retain stain complex Safranin - counterstain 4 Gram negative cells take up counterstain Preparation of Samples Specimen Type Preparation CSF/sterile body fluids Cyto/Centrifuge Blood Culture Broth Drop to slide Tissue Touch prep Tissue homogenate Drop to slide Swabbed material Roll -
MALDI-TOF MS IDENTIFICATION of CITROBACTER YOUNGAE ISOLATED from FOOD Dubravka S
DOI: 10.5937/FFR1802107M UDK 579.84:616.98]:637.3 Short communication MALDI-TOF MS IDENTIFICATION OF CITROBACTER YOUNGAE ISOLATED FROM FOOD Dubravka S. Milanov*1, Milan D. Đilas2, Jelena М. Babić1, Bojana Z. Prunić1, Maja Ј. Velhner1 1 Scientific Veterinary Institute ‘Novi Sad’, Rumenački put 20, 21000 Novi Sad, Serbia 2 Institute of Public Health of Vojvodina, Futoška 121, Novi Sad, Serbia *Corresponding author Tel.: +381 21 4895 346 E-mail: [email protected] ABSTRACT: Salmonella-like bacteria, such as certain species of the Citrobacter genus are sometimes isolated from food and feed. By testing their biochemical and, partially, serological characteristics (according to the regulations given in the ISO 6579-1:2017 Standard) it is impossible to completely reject their affiliation to the Salmonella genus. In addition to this, the food microbiology laboratories usually lack diagnostic tools and procedures for precise identification of these isolates to the species level. Thus, it is considered useful to describe the identification of Citrobacter youngae species using MALDI-TOF MS (Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry). Besides differential diagnostic criteria for distinguishing between Salmonella spp. and Citrobacter youngae, in this communication the relevant data on Citrobacter spp., the emerging opportunistic pathogenic member of Enterobacteriaceae family were presented. Key words: Salmonella-like bacteria, cheese A REPORT ON A LABORATORY CASE A sample of soft, medium-fat cheese accordance with the ISO 6579-1:2017 sprinkled with spices, produced in a small Standard (Table 1), plus using the methyl- scale plant, was examined for the pre- red and citrate utilization tests, which were sence of Salmonella spp. -
Subsurface Endospore-Forming Bacteria Possess Bio-Sealant
www.nature.com/scientificreports OPEN Subsurface Endospore-Forming Bacteria Possess Bio-Sealant Properties Received: 14 July 2017 Sreenivasulu Basha1, Lakshman Kumar Lingamgunta2, Jayakumar Kannali1, Swarna Kumari Accepted: 5 April 2018 Gajula1, Ramesh Bandikari2,3, Sreenivasulu Dasari2, Veena Dalavai1, Paramageetham Published: xx xx xxxx Chinthala1, Prasada Babu Gundala1, Peera Kutagolla4 & Vinodh Kumar Balaji5 Concrete is a strong and fairly inexpensive building substance, but has several disadvantages like cracking that allows corrosion, thus reducing its lifespan. To mitigate these complications, long-lasting microbial self-healing cement is an alternative that is eco-friendly and also actively repairs cracks. The present paper describes the detailed experimental investigation on compressive strength of cement mortars, mixed with six alkaliphilic bacteria, isolated from subsurface mica mines of high alkalinity. The experiments showed that the addition of alkaliphilic isolates at diferent cell concentrations (104 and 106 cells/ml) enhanced the compressive strength of cement mortar, because the rapid growth of bacteria at high alkalinity precipitates calcite crystals that lead to flling of pores and densifying the concrete mix. Thus, Bacillus subtilis (SVUNM4) showed the highest compressive strength (28.61%) of cement mortar at 104 cells/ml compared to those of other fve alkaliphilic isolates (Brevibacillus sp., SVUNM15-22.1%; P. dendritiformis, SVUNM11-19.9%; B. methylotrophicus, SVUNM9-16%; B. licheniformis, SVUNM14- 12.7% and S. maltophilia, SVUNM13-9.6%) and controlled cement mortar as well. This method resulted in the flling of cracks in concrete with calcite (CaCO3), which was observed by scanning electron microscopy (SEM). Our results showed that the alkaliphilic bacterial isolates used in the study are efective in self-healing and repair of concrete cracks. -
Diagnostic Microbiology 170-1 Provides an Overview of the Most Commonly Used Stains
PART Infectious Diseases XVII Section cells is used to judge the suitability of a specimen for culture. For 1 example, the presence of more than 10 epithelial cells per low-power field in a sputum specimen is highly suggestive of a specimen contami- General Considerations nated with oral secretions. In addition, a preliminary assessment of the etiologic agent can be made based upon the morphology (e.g., cocci vs rods) and stain reaction (e.g., Gram-positive isolates are purple; Gram- negative are red) of the microorganisms. However, a negative Gram stain does not rule out infection as 104 to 105 microorganisms per mL Chapter 170 in the specimen are required for detection by this method. In addition to the Gram stain, many other stains are used in micro- biology, both to detect organisms and to help infer their identity. Table Diagnostic Microbiology 170-1 provides an overview of the most commonly used stains. Carey-Ann D. Burnham and Isolation and Identification Gregory A. Storch The approach to isolation of microorganisms in a clinical specimen will vary depending on the body site and pathogen suspected. For body sites that are usually sterile, such as cerebrospinal fluid, nutrient-rich media such as sheep blood agar and chocolate agar are used to aid in Laboratory evidence to support the diagnosis of an infectious disease the recovery of fastidious pathogens. In contrast, stool specimens may be based on 1 or more of the following: direct examination of contain abundant amounts of commensal bacteria and thus to isolate specimens using microscopic or antigen detection techniques, isola- pathogens, selective and differential media must be used. -
Identification and Antimicrobial Susceptibility Testing of Anaerobic
antibiotics Review Identification and Antimicrobial Susceptibility Testing of Anaerobic Bacteria: Rubik’s Cube of Clinical Microbiology? Márió Gajdács 1,*, Gabriella Spengler 1 and Edit Urbán 2 1 Department of Medical Microbiology and Immunobiology, Faculty of Medicine, University of Szeged, 6720 Szeged, Hungary; [email protected] 2 Institute of Clinical Microbiology, Faculty of Medicine, University of Szeged, 6725 Szeged, Hungary; [email protected] * Correspondence: [email protected]; Tel.: +36-62-342-843 Academic Editor: Leonard Amaral Received: 28 September 2017; Accepted: 3 November 2017; Published: 7 November 2017 Abstract: Anaerobic bacteria have pivotal roles in the microbiota of humans and they are significant infectious agents involved in many pathological processes, both in immunocompetent and immunocompromised individuals. Their isolation, cultivation and correct identification differs significantly from the workup of aerobic species, although the use of new technologies (e.g., matrix-assisted laser desorption/ionization time-of-flight mass spectrometry, whole genome sequencing) changed anaerobic diagnostics dramatically. In the past, antimicrobial susceptibility of these microorganisms showed predictable patterns and empirical therapy could be safely administered but recently a steady and clear increase in the resistance for several important drugs (β-lactams, clindamycin) has been observed worldwide. For this reason, antimicrobial susceptibility testing of anaerobic isolates for surveillance -
Bio201lab12.Exp.15.1
Professor Diane Hilker I. Exp. 15: Physiology of Bacteria Purpose: To examine specific enzymatic activities of microbes that are frequently used to identify bacterial species. Inoculated last lab: ◦ E.coli, Enterobacter, Proteus: Gram Neg rods ◦ Bacillus sp.: Gram Pos. rod Phenol Red Dextrose Broth (PRDB): does the microbe ferment glucose or dextrose? ◦ Yellow with gas: + ◦ Yellow without gas: - ◦ Red with or without gas: - + - - ◦ Yellow/red with or without gas: +/- Phenol Red Lactose Broth (PRLB): does the microbe ferment lactose? ◦ Yellow with gas: + ◦ Yellow without gas: - ◦ Red with or without gas: - + - - ◦ Yellow/red with or without gas: +/- Nitrate Broth: Does the microbe produce an enzyme called nitratase? Nitrate Nitrite Nitratase ADD: 2-3 drops Nitrate A Mix; look for color 2-3 drops Nitrate B development in 30sec. Nitrate Broth RESULTS: Peach/pink: + Not peach/pink: - - + Tryptone Broth: Does the microbe produce an enzyme called tryptophanase? Tryptophan Indole Tryptophanase ADD: 10-12 drops of Kovacs Reagent Mix; look immediately for the reaction Tryptone Broth RESULTS: Maroon top layer: + No maroon top layer: - Methyl Red- Voges Proskauer Broth (MRVP) First divide the tube in half using a Pasteur pipette. Transfer ½ of broth to a 2nd empty glass tube. Cap both tubes. One tube you will perform the Methyl Red Test and the 2nd the Voges Proskauer Test Methyl Red Test: Does the microbe produce a large amount of acid end product from glucose fermentation? Glucose pH below 4.4 ADD: 4 drops of Methyl Red Reagent Mix; look immediately for the reaction Methyl Red Test RESULTS: Pink: + Not Pink: - Voges Proskauer Test: Does the microbe produce a compound called acetoin during glucose fermentation? Glucose Acetoin ADD: 18 drops of Barritts A Reagent 18 drops of Barritts B Reagent Mix tube well & let stand for 10 minutes. -
Asian Journal of Medical and Biological Research Detection Of
Asian J. Med. Biol. Res. 2016, 2 (4), 656-663; doi: 10.3329/ajmbr.v2i4.31011 Asian Journal of Medical and Biological Research ISSN 2411-4472 (Print) 2412-5571 (Online) www.ebupress.com/journal/ajmbr Article Detection of bacterial species from clinical mastitis in dairy cows at Nilphamari district and their antibiogram studies Md. Titon mia 1, Md. Khaled hossain 2, Nazmi Ara Rumi3*, Md. Shajedur Rahman 4, Md. Shahin Mahmud 5 and Monoranjan Das 6 1Department of Microbiology, Hajee Mohammad Danesh Science &Technology University, Dinajpur, Bangladesh 2Department of Microbiology, Hajee Mohammad Danesh Science &Technology University, Dinajpur, Bangladesh 3Department of Microbiology, Hajee Mohammad Danesh Science &Technology University, Dinajpur, Bangladesh 4Department of Medicine, Surgery and Obstetrics, Hajee Mohammad Danesh Science& Technology University, Dinajpur, Bangladesh 5Department of Microbiology, Hajee Mohammad Danesh Science &Technology University, Dinajpur, Bangladesh 6Department of Microbiology, Hajee Mohammad Danesh Science &Technology University, Dinajpur, Bangladesh *Corresponding author: Nazmi Ara Rumi, Lecturer, Department of Microbiology, Hajee Mohammad Danesh Science & Technology University, Dinajpur, Bangladesh. Phone: +8801774410044; E-mail: [email protected] Received: 17 November 2016/Accepted: 20 December 2016/ Published: 29 December 2016 Abstract: The present study was conducted on the rural dairy cows to detect the bacterial species from clinical mastitis in dairy cows with their antibiogram studies during the period from January 2015 to June 2015. For this purpose two upazilla were selected under the Nilphamari district. On the basis of morphology, staining, cultural and biochemical characteristics, the isolated organisms were classified as, Staphylococcus spp., Streptococcus spp., E. coli, and Bacillus spp. .For this study, a total of 48 samples were collected from affected mastitis cows.