Global Transcriptome Analysis Identifies Weight Regain-Induced
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Genetic and Genomic Analysis of Hyperlipidemia, Obesity and Diabetes Using (C57BL/6J × TALLYHO/Jngj) F2 Mice
University of Tennessee, Knoxville TRACE: Tennessee Research and Creative Exchange Nutrition Publications and Other Works Nutrition 12-19-2010 Genetic and genomic analysis of hyperlipidemia, obesity and diabetes using (C57BL/6J × TALLYHO/JngJ) F2 mice Taryn P. Stewart Marshall University Hyoung Y. Kim University of Tennessee - Knoxville, [email protected] Arnold M. Saxton University of Tennessee - Knoxville, [email protected] Jung H. Kim Marshall University Follow this and additional works at: https://trace.tennessee.edu/utk_nutrpubs Part of the Animal Sciences Commons, and the Nutrition Commons Recommended Citation BMC Genomics 2010, 11:713 doi:10.1186/1471-2164-11-713 This Article is brought to you for free and open access by the Nutrition at TRACE: Tennessee Research and Creative Exchange. It has been accepted for inclusion in Nutrition Publications and Other Works by an authorized administrator of TRACE: Tennessee Research and Creative Exchange. For more information, please contact [email protected]. Stewart et al. BMC Genomics 2010, 11:713 http://www.biomedcentral.com/1471-2164/11/713 RESEARCH ARTICLE Open Access Genetic and genomic analysis of hyperlipidemia, obesity and diabetes using (C57BL/6J × TALLYHO/JngJ) F2 mice Taryn P Stewart1, Hyoung Yon Kim2, Arnold M Saxton3, Jung Han Kim1* Abstract Background: Type 2 diabetes (T2D) is the most common form of diabetes in humans and is closely associated with dyslipidemia and obesity that magnifies the mortality and morbidity related to T2D. The genetic contribution to human T2D and related metabolic disorders is evident, and mostly follows polygenic inheritance. The TALLYHO/ JngJ (TH) mice are a polygenic model for T2D characterized by obesity, hyperinsulinemia, impaired glucose uptake and tolerance, hyperlipidemia, and hyperglycemia. -
Mechanistic Characterization of RASGRP1 Variants Identifies an Hnrnp K-Regulated Transcriptional Enhancer Contributing to SLE Susceptibility
bioRxiv preprint doi: https://doi.org/10.1101/568790; this version posted March 6, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Mechanistic characterization of RASGRP1 variants identifies an hnRNP K-regulated transcriptional enhancer contributing to SLE susceptibility Julio E. Molineros1*, Bhupinder Singh1*, Chikashi Terao2,3, Yukinori Okada4, Jakub Kaplan1, Barbara McDaniel1, Shuji Akizuki3, Celi Sun1, Carol Webb5, Loren L. Looger6, Swapan K. Nath1 1Arthritis and Clinical Immunology Research Program, Oklahoma Medical Research Foundation, Oklahoma City, OK, USA 2Laboratory for Statistical Analysis, RIKEN Center for Integrative Medical Sciences, Yokohama 230-0045, Japan. 3Department of Rheumatology and Clinical Immunology, Graduate School of Medicine, Kyoto University, Kyoto 606-8507, Japan. 4Department of Statistical Genetics, Osaka University Graduate School of Medicine, Osaka, Japan 5Department of Microbiology and Immunology, University of Oklahoma Health Sciences Center, Oklahoma City, OK, USA 6Howard Hughes Medical Institute, Janelia Research Campus, Ashburn, VA, USA *Contributed equally Corresponding author Swapan K. Nath, Ph.D. Member Arthritis & Clinical Immunology Program Oklahoma Medical Research Foundation 825 NE 13th St. Oklahoma City, OK 73104 Ph: (405)-271-7765 Fax: (405)-271-4110 [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/568790; this version posted March 6, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
Patients with Systemic Lupus Erythematosus Nucleotide-Releasing Protein 1 in a Subset of Defective Expression of Ras Guanyl
Defective Expression of Ras Guanyl Nucleotide-Releasing Protein 1 in a Subset of Patients with Systemic Lupus Erythematosus This information is current as Shinsuke Yasuda, Richard L. Stevens, Tomoko Terada, of September 24, 2021. Masumi Takeda, Toko Hashimoto, Jun Fukae, Tetsuya Horita, Hiroshi Kataoka, Tatsuya Atsumi and Takao Koike J Immunol 2007; 179:4890-4900; ; doi: 10.4049/jimmunol.179.7.4890 http://www.jimmunol.org/content/179/7/4890 Downloaded from References This article cites 39 articles, 19 of which you can access for free at: http://www.jimmunol.org/content/179/7/4890.full#ref-list-1 http://www.jimmunol.org/ Why The JI? Submit online. • Rapid Reviews! 30 days* from submission to initial decision • No Triage! Every submission reviewed by practicing scientists • Fast Publication! 4 weeks from acceptance to publication by guest on September 24, 2021 *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2007 by The American Association of Immunologists All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. The Journal of Immunology Defective Expression of Ras Guanyl Nucleotide-Releasing Protein 1 in a Subset of Patients with Systemic Lupus Erythematosus1 Shinsuke Yasuda,2* Richard L. -
Restimulation-Induced Apoptosis of T Cells Is Impaired in Patients with X-Linked Lymphoproliferative Disease Caused by SAP Deficiency
Restimulation-induced apoptosis of T cells is impaired in patients with X-linked lymphoproliferative disease caused by SAP deficiency Andrew L. Snow, … , Jack J. Bleesing, Michael J. Lenardo J Clin Invest. 2009;119(10):2976-2989. https://doi.org/10.1172/JCI39518. Research Article Immunology X-linked lymphoproliferative disease (XLP) is a rare congenital immunodeficiency that leads to an extreme, usually fatal increase in the number of lymphocytes upon infection with EBV. It is most commonly defined molecularly by loss of expression of SLAM-associated protein (SAP). Despite this, there is little understanding of how SAP deficiency causes lymphocytosis following EBV infection. Here we show that T cells from individuals with XLP are specifically resistant to apoptosis mediated by TCR restimulation, a process that normally constrains T cell expansion during immune responses. Expression of SAP and the SLAM family receptor NK, T, and B cell antigen (NTB-A) were required for TCR-induced upregulation of key pro-apoptotic molecules and subsequent apoptosis. Further, SAP/NTB-A signaling augmented the strength of the proximal TCR signal to achieve the threshold required for restimulation-induced cell death (RICD). Strikingly, TCR ligation in activated T cells triggered increased recruitment of SAP to NTB-A, dissociation of the phosphatase SHP-1, and colocalization of NTB-A with CD3 aggregates. In contrast, NTB-A and SHP-1 contributed to RICD resistance in XLP T cells. Our results reveal what we believe to be novel roles for NTB-A and SAP in regulating T cell homeostasis through apoptosis and provide mechanistic insight into the pathogenesis of lymphoproliferative disease in XLP. -
Slamf6 Negatively Regulates Autoimmunity
HHS Public Access Author manuscript Author ManuscriptAuthor Manuscript Author Clin Immunol Manuscript Author . Author manuscript; Manuscript Author available in PMC 2017 December 01. Published in final edited form as: Clin Immunol. 2016 December ; 173: 19–26. doi:10.1016/j.clim.2016.06.009. Slamf6 negatively regulates autoimmunity Ninghai Wang#, Marton Keszei#, Peter Halibozek#, Burcu Yigit#, Pablo Engel‡, and Cox Terhorst# #Division of Immunology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA 02115 ‡Department of Biomedical Sciences, Medical School, University of Barcelona, Barcelona, Spain Abstract The nine SLAM family (Slamf) receptors are positive or negative regulators of adaptive and innate immune responses, and of several autoimmune diseases. Here we report that the transfer of Slamf6−/− B6 CD4+ T cells into co-isogenic bm12 mice causes SLE-like autoimmunity with elevated levels of autoantibodies. In addition, significantly higher percentages of Tfh cells and IFN-γ-producing CD4+ cells, as well as GC B cells were observed. Interestingly, the expression of the Slamf6-H1 isoform in Slamf6−/− CD4+ T cells did not induce this lupus-like phenotype. By contrast, Slamf1−/− or Slamf5−/− CD4+ T cells caused the same pathology as WT CD4+ T cells. As the transfer of Slamf [1+6]−/− or Slamf [1+5+6]−/− CD4+ T cells induced WT levels of autoantibodies, the presence of Slamf1 was requisite for the induction of increased levels of autoantibodies by Slamf6−/− CD4+ T cells. We conclude that Slamf6 functions as an inhibitory receptor that controls autoimmune responses. Keywords Slamf6; GVH; Autoantibody; Tfh cells 1. Introduction Systemic Lupus Erythematosus (SLE) is a chronic relapsing autoimmune disease, which is caused by interactions among genetic, hormonal and environmental factors and affects various end organs [1]. -
2072.Full.Pdf
Simultaneous TCR and CD244 Signals Induce Dynamic Downmodulation of CD244 on Human Antiviral T Cells This information is current as Yovana Pacheco, Anna P. McLean, Janine Rohrbach, of October 1, 2021. Filippos Porichis, Daniel E. Kaufmann and Daniel G. Kavanagh J Immunol 2013; 191:2072-2081; Prepublished online 2 August 2013; doi: 10.4049/jimmunol.1300435 http://www.jimmunol.org/content/191/5/2072 Downloaded from References This article cites 38 articles, 12 of which you can access for free at: http://www.jimmunol.org/content/191/5/2072.full#ref-list-1 http://www.jimmunol.org/ Why The JI? Submit online. • Rapid Reviews! 30 days* from submission to initial decision • No Triage! Every submission reviewed by practicing scientists • Fast Publication! 4 weeks from acceptance to publication by guest on October 1, 2021 *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2013 by The American Association of Immunologists, Inc. All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. The Journal of Immunology Simultaneous TCR and CD244 Signals Induce Dynamic Downmodulation of CD244 on Human Antiviral T Cells Yovana Pacheco,* Anna P. McLean,* Janine Rohrbach,* Filippos Porichis,* Daniel E. Kaufmann,*,† and Daniel G. -
Immune Adaptor SKAP1 Acts a Scaffold for Polo-Like Kinase 1 (PLK1)
www.nature.com/scientificreports OPEN Immune adaptor SKAP1 acts a scafold for Polo-like kinase 1 (PLK1) for the optimal cell cycling Received: 14 September 2018 Accepted: 6 June 2019 of T-cells Published: xx xx xxxx Monika Raab1,2, Klaus Strebhardt1 & Christopher E. Rudd2,3,4 While the immune cell adaptor protein SKAP1 mediates LFA-1 activation induced by antigen-receptor (TCR/CD3) ligation on T-cells, it is unclear whether the adaptor interacts with other mediators of T-cell function. In this context, the serine/threonine kinase, polo-like kinase (PLK1) regulates multiple steps in the mitotic and cell cycle progression of mammalian cells. Here, we show that SKAP1 is phosphorylated by and binds to PLK1 for the optimal cycling of T-cells. PLK1 binds to the N-terminal residue serine 31 (S31) of SKAP1 and the interaction is needed for optimal PLK1 kinase activity. Further, siRNA knock- down of SKAP1 reduced the rate of T-cell division concurrent with a delay in the expression of PLK1, Cyclin A and pH3. Reconstitution of these KD cells with WT SKAP1, but not the SKAP1 S31 mutant, restored normal cell division. SKAP1-PLK1 binding is dynamically regulated during the cell cycle of T-cells. Our fndings identify a novel role for SKAP1 in the regulation of PLK1 and optimal cell cycling needed for T-cell clonal expansion in response to antigenic activation. Polo-like kinase 1 (PLK1) is a serine/threonine kinase that regulates the mitosis of mammalian cells. It is a mem- ber of the Polo-like serine/threonine kinase (PLKs) family that are structurally conserved from yeast to mam- mals. -
Structural Analysis of Autoinhibition in the Ras-Specific Exchange Factor
RESEARCH ARTICLE elife.elifesciences.org Structural analysis of autoinhibition in the Ras-specific exchange factor RasGRP1 Jeffrey S Iwig1,2, Yvonne Vercoulen3†, Rahul Das1,2†, Tiago Barros1,2,4, Andre Limnander3, Yan Che1,2, Jeffrey G Pelton2, David E Wemmer2,5,6, Jeroen P Roose3*, John Kuriyan1,2,4,5,6* 1Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States; 2California Institute for Quantitative Biosciences, University of California, Berkeley, Berkeley, United States; 3Department of Anatomy, University of California, San Francisco, San Francisco, United States; 4Howard Hughes Medical Institute, University of California, Berkeley, Berkeley, United States; 5Department of Chemistry, University of California, Berkeley, Berkeley, United States; 6Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, United States Abstract RasGRP1 and SOS are Ras-specific nucleotide exchange factors that have distinct roles in lymphocyte development. RasGRP1 is important in some cancers and autoimmune diseases but, in contrast to SOS, its regulatory mechanisms are poorly understood. Activating signals lead to the membrane recruitment of RasGRP1 and Ras engagement, but it is unclear how interactions between RasGRP1 and Ras are suppressed in the absence of such signals. We present a crystal structure of a fragment of RasGRP1 in which the Ras-binding site is blocked by an interdomain linker and the membrane-interaction surface of RasGRP1 is hidden within a dimerization interface that may be stabilized by the C-terminal oligomerization domain. NMR data demonstrate that calcium binding to the regulatory module generates substantial conformational changes that are incompatible with the inactive assembly. These features allow RasGRP1 to be maintained in an inactive state that is poised for activation by calcium and membrane-localization signals. -
LY108 (SLAMF6) (NM 001184715) Human Recombinant Protein Product Data
OriGene Technologies, Inc. 9620 Medical Center Drive, Ste 200 Rockville, MD 20850, US Phone: +1-888-267-4436 [email protected] EU: [email protected] CN: [email protected] Product datasheet for TP329827 LY108 (SLAMF6) (NM_001184715) Human Recombinant Protein Product data: Product Type: Recombinant Proteins Description: Purified recombinant protein of Homo sapiens SLAM family member 6 (SLAMF6), transcript variant 3. Species: Human Expression Host: HEK293T Tag: C-Myc/DDK Predicted MW: 32.5 Concentration: >50 ug/mL as determined by microplate BCA method Purity: > 80% as determined by SDS-PAGE and Coomassie blue staining Buffer: 25 mM Tris.HCl, pH 7.3, 100 mM glycine, 10% glycerol Preparation: NULL or Add: Recombinant proteins was captured through anti-DDK affinity column followed by conventional chromatography steps. Storage: Store at -80°C. Stability: Stable for 12 months from the date of receipt of the product under proper storage and handling conditions. Avoid repeated freeze-thaw cycles. RefSeq: NP_001171644 Locus ID: 114836 UniProt ID: Q96DU3, B4E1U5 Cytogenetics: 1q23.2-q23.3 RefSeq ORF: 846 Synonyms: CD352; KALI; KALIb; Ly108; NTB-A; NTBA; SF2000 This product is to be used for laboratory only. Not for diagnostic or therapeutic use. View online » ©2021 OriGene Technologies, Inc., 9620 Medical Center Drive, Ste 200, Rockville, MD 20850, US 1 / 2 LY108 (SLAMF6) (NM_001184715) Human Recombinant Protein – TP329827 Summary: The protein encoded by this gene is a type I transmembrane protein, belonging to the CD2 subfamily of the immunoglobulin superfamily. This encoded protein is expressed on Natural killer (NK), T, and B lymphocytes. It undergoes tyrosine phosphorylation and associates with the Src homology 2 domain-containing protein (SH2D1A) as well as with SH2 domain- containing phosphatases (SHPs). -
Inflammatory, Regulatory, and Autophagy Co-Expression Modules
Durocher et al. Journal of Neuroinflammation (2019) 16:56 https://doi.org/10.1186/s12974-019-1433-4 RESEARCH Open Access Inflammatory, regulatory, and autophagy co-expression modules and hub genes underlie the peripheral immune response to human intracerebral hemorrhage Marc Durocher1, Bradley P. Ander1, Glen Jickling1, Farah Hamade1, Heather Hull1, Bodie Knepp1, Da Zhi Liu1, Xinhua Zhan1, Anh Tran1, Xiyuan Cheng1, Kwan Ng1, Alan Yee1, Frank R. Sharp1 and Boryana Stamova1,2* Abstract Background: Intracerebral hemorrhage (ICH) has a high morbidity and mortality. The peripheral immune system and cross-talk between peripheral blood and brain have been implicated in the ICH immune response. Thus, we delineated the gene networks associated with human ICH in the peripheral blood transcriptome. We also compared the differentially expressed genes in blood following ICH to a prior human study of perihematomal brain tissue. Methods: We performed peripheral blood whole-transcriptome analysis of ICH and matched vascular risk factor control subjects (n = 66). Gene co-expression network analysis identified groups of co-expressed genes (modules) associated with ICH and their most interconnected genes (hubs). Mixed-effects regression identified differentially expressed genes in ICH compared to controls. Results: Of seven ICH-associated modules, six were enriched with cell-specific genes: one neutrophil module, one neutrophil plus monocyte module, one T cell module, one Natural Killer cell module, and two erythroblast modules. The neutrophil/monocyte modules were enriched in inflammatory/immune pathways; the T cell module in T cell receptor signaling genes; and the Natural Killer cell module in genes regulating alternative splicing, epigenetic, and post-translational modifications. -
Rasgrp1 Overexpression in the Epidermis of Transgenic Mice Contributes to Tumor Progression During Multistage Skin Carcinogenesis Courtney T
Research Article RasGRP1 Overexpression in the Epidermis of Transgenic Mice Contributes to Tumor Progression during Multistage Skin Carcinogenesis Courtney T. Luke,1 Carolyn E. Oki-Idouchi,1 J. Mark Cline,2 and Patricia S. Lorenzo1 1Natural Products and Cancer Biology Program, Cancer Research Center of Hawaii, University of Hawaii at Manoa, Honolulu, Hawaii and 2Department of Pathology, Wake Forest University School of Medicine, Winston-Salem, North Carolina Abstract diacylglycerol and its ultrapotent analogues, the phorbol esters (3). RasGRP1 is a guanine nucleotide exchange factor for Ras, Previous studies on RasGRP1 and RasGRP3 showed their high- activated in response to the second messenger diacylglycerol affinity binding to diacylglycerol analogues (4–6), resulting in the and its ultrapotent analogues, the phorbol esters. We have activation of Ras and Ras signaling cascades, and suggesting that previously shown that RasGRP1 is expressed in mouse pathways besides PKC could transmit signals from diacylglycerol to epidermal keratinocytes and that transgenic mice over- Ras. In fact, the discovery of RasGRP1 has led to a better under- expressing RasGRP1 in the epidermis under the keratin 5 standing of the link between T-cell receptor stimulation and phos- promoter (K5.RasGRP1) are prone to developing spontaneous pholipase C activation with Ras signaling (7). In contrast to PKC, RasGRP members have limited tissue distribution. RasGRP1, for papillomas and squamous cell carcinomas, suggesting a role for RasGRP1 in skin tumorigenesis. Here, we examined the example, is expressed in Tcells and at lower levels in B cells, neurons, response of the K5.RasGRP1 mice to multistage skin carcino- mastocytes, and some kidney cells (8–12). -
Rabbit Anti-Rasgrp1/FITC Conjugated Antibody
SunLong Biotech Co.,LTD Tel: 0086-571- 56623320 Fax:0086-571- 56623318 E-mail:[email protected] www.sunlongbiotech.com Rabbit Anti-Rasgrp1/FITC Conjugated antibody SL10436R-FITC Product Name: Anti-Rasgrp1/FITC Chinese Name: FITC标记的Ras蛋白特异鸟嘌呤核苷酸释放因子1抗体 Calcium and DAG-regulated guanine nucleotide exchange factor II; CALDAG-GEFI; CALDAG-GEFII; Guanine nucleotide exchange factor, calcium and DAG regulated, Alias: Rap1A; hRasGRP1; Ras activator RasGRP; RAS guanyl nucleotide releasing protein 1; RAS guanyl releasing protein 1 (calcium and DAG-regulated); RAS guanyl releasing protein 1; RASGRP; RASGRP1; GRP1_HUMAN. Organism Species: Rabbit Clonality: Polyclonal React Species: Human,Mouse,Rat,Dog,Rabbit, ICC=1:50-200IF=1:50-200 Applications: not yet tested in other applications. optimal dilutions/concentrations should be determined by the end user. Molecular weight: 90kDa Form: Lyophilized or Liquid Concentration: 1mg/ml immunogen: KLH conjugated synthetic peptide derived from human Rasgrp1 Lsotype: IgGwww.sunlongbiotech.com Purification: affinity purified by Protein A Storage Buffer: 0.01M TBS(pH7.4) with 1% BSA, 0.03% Proclin300 and 50% Glycerol. Store at -20 °C for one year. Avoid repeated freeze/thaw cycles. The lyophilized antibody is stable at room temperature for at least one month and for greater than a year Storage: when kept at -20°C. When reconstituted in sterile pH 7.4 0.01M PBS or diluent of antibody the antibody is stable for at least two weeks at 2-4 °C. background: This gene is a member of a family of genes characterized by the presence of a Ras superfamily guanine nucleotide exchange factor (GEF) domain. It functions as a Product Detail: diacylglycerol (DAG)-regulated nucleotide exchange factor specifically activating Ras through the exchange of bound GDP for GTP.