Deixis Department of Energy Computational Science Graduate Fellowship Science Graduate of Energy Computational Department
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DEIXIS Computational Science Graduate Fellowship TABLE of CONTENTS
THE DOE CSGF ANNUAL Department of Energy DEIXIS Computational Science Graduate Fellowship TABLE OF CONTENTS 2003 - 2004 PAGE 6 Editor DEIXIS (∆ΕΙΞΙΣ) transliterated Shelly Olsan from classical Greek into the Roman alphabet, (pronounced da¯ksis) means Design a display, mode or process of proof; Juls Design, Inc. PAGE 29 the process of showing, proving or demonstrating. DEIXIS can also Contributors PAGE 11 refer to the workings of an individual’s Jacob Berkowitz 46 keen intellect, or to the means by which William J. Cannon 4 Alumni Profiles such individuals, e.g. DOE CSGF Victor D. Chase Practicum fellows, are identified. Peter Gwynne Experiences 46 Tom Epperly PAGE 15 Karen Hede 14 Lawrence Livermore DEIXIS is an annual publication Lori Valigra 4High Performance Practica Department of Energy National Laboratory of the Department of Energy Lab Research Computational Science Graduate DEIXIS, The DOE CSGF Annual 4Mary Ann Leung 30 Calculating Quarks 47 Marc Serre Fellowship (DOE CSGF) program. is published by the Krell Institute. The A Calling Realized 14 Unfolding Proteins Brookhaven National Laboratory University of North Carolina – DEIXIS illustrates work done at Krell Institute administers the Department of Energy Computational Science Graduate Lawrence Berkeley Chapel Hill eight multi-program DOE laboratories Fellowship program for the DOE under 8Ahmed Ismail National Laboratory 34 Modeling Metals and highlights the DOE CSGF fellows contract DE-FG02-97ER25308. The Krell Institute is a non-profit company that Challenge of Simplification Los Alamos National Laboratory 48 Scott Zoldi and alumni. The DOE CSGF is works in partnership with national science 18 Studying Structures Fair Isaac Corporation funded by the Office of Science and and technology research and education 10 Randall McDermott 38 STOMPing Ground communities to help them achieve Sandia National Laboratories the National Nuclear Security national priorities. -
Deixis Department of Energy Computational Science Graduate Fellowship Science Graduate of Energy Computational Department
THE ANNUAL 2015 DEIXIS DEPARTMENT OF ENERGY COMPUTATIONAL SCIENCE GRADUATE FELLOWSHIP SCIENCE GRADUATE OF ENERGY COMPUTATIONAL DEPARTMENT BRIGHT IDEA Eric Isaacs probes how metal nanoparticles supercharge sunlight’s water-splitting feat PAGE 5 THE ANNUAL DEIXIS TABLE OF CONTENTS DEIXIS, The DOE CSGF Annual is published by the Krell Institute. Krell administers the Department of Energy Computational Science Graduate Fellowship (DOE CSGF) program for the DOE under contract DE-FG02-97ER25308. For additional information about the DOE CSGF program, the Krell Institute or topics covered in this publication, please go to: www.krellinst.org/csgf Or contact: Editor, DEIXIS Krell Institute 1609 Golden Aspen Drive, Suite 101 Ames, IA 50010 (515) 956-3696 Copyright 2015 Krell Institute. All rights reserved. 4 22 Practicum Profiles Winning CYSE Essay Summer Application Communicate Your Science DEIXIS (ΔΕΙΞΙΣ — pronounced da¯ksis) transliterated from classical Greek into the Roman alphabet, means 5 Eric Isaacs || Shining a Light on & Engineering Contest a display, mode or process of proof; the process of Water-splitting Reactions 22 Andrew Stershic || Building Batteries showing, proving or demonstrating. DEIXIS can also refer to the workings of an individual’s keen 9 Aurora Pribram-Jones || Putting Theory from the Microstructure Up intellect, or to the means by which such individuals, into Practice, Under Pressure e.g. DOE CSGF fellows, are identified. 13 Aaron Sisto || Conducting Ensembles DEIXIS is an annual publication of the Department of to Ferret Out Features 24 Energy Computational Science Graduate Fellowship Howes Scholar program that highlights the work of fellows and alumni. Matthews Recognized for Leadership DOE CSGF funding is provided by the DOE Office of 16 in Computational Chemistry Advanced Scientific Computing Research (ASCR) within Alumni Profiles the Office of Science and the Advanced Simulation and Computing (ASC) program within the National Nuclear From Alumni to Leaders Security Administration. -
DEIXIS, the DOE CSGF Annual Is Published DEIXIS (ΔΕΙΞΙΣ — Pronounced Da¯Ksis) Manager, Science Media — Bill Cannon and Reduce Carbon Emissions
2021 TOUR DE FORCE Final-year fellow Quentarius Moore looks at how mechanical stress alters chemical reactions. PAGE 16 DEPARTMENT OF ENERGY COMPUTATIONAL SCIENCE GRADUATE FELLOWSHIP SCIENCE GRADUATE COMPUTATIONAL OF ENERGY DEPARTMENT STARS ARE BORN Of galaxies, quantum control and climate change – other fellows share their stories. PAGE 10 WHAT THEY’RE DOING NOW Program alumni search for ways to put germs to work, PLUS: A conversation about store renewable energy and optimize simulations. NERSC’s next big machine, dual Howes winners and more. PAGE 22 Closely packed particles in a colloidal suspension with friction, from a simulation by DOE CSGF alumnus Gerald J. Wang of Carnegie Mellon University. The colors differentiate particle groups whose motions are particularly interrelated, affecting the stickiness of the whole material. Credit: Gerald J. Wang. RECORD-SETTING: THE INCOMING DOE CSGF CLASS For 2021-22, the Department of Energy Computational Science Graduate Fellowship (DOE CSGF) will induct a record- setting class of 32 new fellows attending institutions across the country, from the University of California, San Diego, to the University at Buffalo. Each will learn how to apply high-performance computing to problems of national importance, working in fields that include atmospheric science, condensed matter physics and quantum information. DEPARTMENT OF ENERGY Jezrielle Annis Souradip Ghosh Abigail Poteshman Texas A&M University Carnegie Mellon University University of Chicago Physical Chemistry Computer Science Computational and -
The Doe Csgf Annual 2 0
2005 - 2006 2005 2005 - 2006 DEIXIS - 2006 THE DOE CSGF ANNUAL DEIXIS DEIXIS – – THE THE DOE CSGF ANNUAL DOE CSGF ANNUAL DEPARTMENT OF ENERGY COMPUTATIONAL SCIENCE GRADUATE FELLOWSHIP Funded by: The Krell Institute Office of Science and 1609 Golden Aspen Drive, Suite 101 National Nuclear Security Ames, IA 50010 Administration’s Office of (515) 956-3696 Defense Programs www.krellinst.org/csgf THE DOE CSGF ANNUAL Department of Energy DEIXIS Computational Science Graduate Fellowship TABLE OF CONTENTS 2005 - 2006 PAGE 13 DEIXIS Editor (∆ΕΙΞΙΣ) transliterated Shelly Olsan from classical Greek into the Roman alphabet, (pronounced da¯ksis) means Copy Editor a display, mode or process of proof; Ron Winther PAGE 23 the process of showing, proving or Design demonstrating. DEIXIS can also Juls Design, Inc. PAGE 15 refer to the workings of an individual’s 46 keen intellect, or to the means by which Contributors 4 Alumni Profiles such individuals, e.g. DOE CSGF Jacob Berkowitz Practicum fellows, are identified. Alan S. Brown Experiences 46 Chris Oehmen PAGE 19 Victor D. Chase 14 Pacific Northwest DEIXIS is an annual publication Karen Hede 4 The Reasearcher’s Roadtrip Department of Energy National Laboratory of the Department of Energy Michael Szpir Lab Research Computational Science Graduate 4 Bree Aldridge 30 Fusion and Ice 47 Joel Parriott Fellowship (DOE CSGF) program. DEIXIS, The DOE CSGF Annual Measuring the Stroke of 14 Inside a Flame Brookhaven National Laboratory Office of Management and Budget DEIXIS illustrates work done at is published by the Krell Institute. The Krell Institute administers the Department a Butterfly’s Wing Lawrence Berkeley eight multi-program DOE laboratories of Energy Computational Science Graduate National Laboratory 34 Of Tsunamis, Thermonuclear 48 Mayya Tokman and highlights the DOE CSGF fellows Fellowship program for the DOE under contract DE-FG02-97ER25308. -
ROCK STAR of Earth’S Early Geology and Hikes the Heights PAGE 13 for Hard Evidence
2016 Fellow Brenhin Keller computes conditions ROCK STAR of Earth’s early geology and hikes the heights PAGE 13 for hard evidence. DEPARTMENT OF ENERGY COMPUTATIONAL SCIENCE GRADUATE FELLOWSHIP SCIENCE GRADUATE COMPUTATIONAL OF ENERGY DEPARTMENT MORE FELLOWS’ RESEARCH • Pushing cosmic boundaries • Probing a river’s metabolism • Cracking a fracturing problem Alumna Bree Aldridge probes a tuberculosis puzzle, dual Howes Award winners, computing on the brain – and cancer – with Argonne’s Rick Stevens, and an atomic boogie. DEPARTMENT OF ENERGY Computational Science Graduate Fellowship Welcome to THE 2016 incominG DOE CSGF class In fall 2016, 27 doctoral students – the biggest group yet – enter the Department of Energy Computational Science Graduate Fellowship (DOE CSGF). These fellows were chosen in a rigorous screening process from more than 350 applicants. Each will receive yearly stipends, full tuition and fees and other benefits for up to four years, freeing them to pursue research and training in applied mathematics, computer science and an application area of their choice. The Department of Energy Computational Science Graduate Fellowship Riley Brady Harshil Kamdar Mario Ortega (DOE CSGF) program provides outstanding benefits and opportunities University of Colorado Harvard University University of California, Berkeley to students pursuing doctoral degrees in fields of study that utilize Atmospheric and Oceanic Dynamics Computational Astrophysics Nuclear Engineering Brian Cornille Kelly Kochanski nicholas Rivera high-performance computing -
Alumni Go Big Fellows Take on Bots, Hurricanes and More
2019 ALUMNI GO BIG Former fellows are among those DEPARTMENT OF ENERGY COMPUTATIONAL SCIENCE GRADUATE FELLOWSHIP SCIENCE GRADUATE COMPUTATIONAL OF ENERGY DEPARTMENT leading the quest for exascale, the next high-performance computing horizon PAGE 22 FELLOWS TAKE ON BOTS, HURRICANES AND MORE • Casey Berger captures quantum powers ALSO: Alumnus Jarrod McClean on • Julia Ebert wrangles robot swarms quantum computing, dual Howes • Max Bremer speeds a surge model Scholars and our essay winner herds • Carson Kent seeks an ultimate optimizer computational cows INCOMING DOE CSGF CLASS The 29th Department of Energy Computational Science Graduate Fellowship (DOE CSGF) class includes students applying computing power to a range of subjects, such as materials science, neuroscience, climate dynamics and biological oceanography. Like all previous fellows, they’ll receive yearly stipends, payment of full tuition and fees, and other benefits for up to four years. Christopher Balzer Louis Jenkins Guy Moore California Institute of Technology University of Rochester University of California, Berkeley DEPARTMENT OF ENERGY Chemical Engineering Computer Science Applied Mathematics Thomas Blommel Christopher Kane Jamin Rader University of Michigan University of Arizona Colorado State University COMPUTATIONAL SCIENCE Physics Physics Climate Dynamics Kyle Bushick Arianna Krinos Michael Toriyama GRADUATE FELLOWSHIP University of Michigan Massachusetts Institute of Technology Northwestern University Materials Science Biological Oceanography Computational Materials -
Burning Ambition
THE ANNUAL 2013 DEIXIS BURNING AMBITION Leslie Dewan’s New Nuclear Reactor Design Launches into a Promising Company PAGE 5 DEPARTMENT OF ENERGY COMPUTATIONAL SCIENCE GRADUATE FELLOWSHIP SCIENCE GRADUATE OF ENERGY COMPUTATIONAL DEPARTMENT SPECIAL FEATURE LIGHT EXPERIMENTS, HEAVY DATA At Light Sources and Other Facilities, Computation Sifts Mounds of Complex Results PAGE 20 THE ANNUAL TABLE OF CONTENTS DEIXIS DEIXIS, The DOE CSGF Annual is published by the Krell Institute. Krell administers the Department of Energy Computational Science Graduate Fellowship (DOE CSGF) program for the DOE under contract DE-FG02-97ER25308. For additional information about the DOE CSGF 13 17 20 34 program, the Krell Institute or topics covered in this publication, please contact: Editor, DEIXIS Krell Institute 1609 Golden Aspen Drive, Suite 101 Ames, IA 50010 (515) 956-3696 www.krellinst.org/csgf NO SMALL AMBITIONS 4 20 36 Copyright 2013 Krell Institute. Practicum Profiles Special Feature Howes Scholar All rights reserved. Students in the Department of Energy Computational Science The Power of the Practicum Big Data Hits the Beamline Alumna Honored for Graduate Fellowship (DOE CSGF) take on big challenges, in terms of Research and Outreach difficulty or scale – or both. 5 Leslie Dewan DEIXIS (ΔΕΙΞΙΣ — pronounced da¯ksis) transliterated Leslie Dewan, for example, promotes an approach to nuclear Focus on Nuclear Waste from classical Greek into the Roman alphabet, means a display, mode or process of proof; the process of energy that concentrates on smaller reactors burning existing wastes Brings Fellow Fame 28 showing, proving or demonstrating. DEIXIS can more safely. Fellows Devin Matthews and Edgar Solomonik teamed up Alumni Profiles 38 also refer to the workings of an individual’s keen intellect, or to the means by which such individuals, on a summer project to rewrite a key quantum chemistry algorithm and 9 Devin Matthews Graduates Go on to Excel Alumni e.g. -
2017-2018 Annual Report NSF AWARD NUMBER EAR-1550901
COMPUTATIONAL INFRASTRUCTURE FOR GEODYNAMICS 2017-2018 Annual Report NSF AWARD NUMBER EAR-1550901 July 2018 22119 EPS, One Shields Avenue University of California 530.752.2889 Davis, CA 95616 geodynamics.org i | Page Executive Summary The Computational Infrastructure for Geodynamics (CIG) is funded by the National Science Foundation (NSF) to support and promote development, dissemination, and use of high-quality software for modeling geodynamical and seismological processes. During the current reporting period, we have focused on making progress on all aspects of software development, improving CIG’s practices and governance, strengthening partnerships, continuing education and training, and building community. We held regular meetings and workshops for software development projects, developed and offered tutorials for new codes, ran a first-ever hackathon for the short-term crustal dynamics code PyLith and an annual hackathon for the mantle convection code ASPECT. CIG continued to advance software development in mantle convection, crustal dynamics, geodynamo, long-term tectonics, seismology, and evaluated future directions for these codes. CIG supported community development and knowledge transfer through workshops, webinars, newsletters, tutorials, e-mail distribution lists, and joint workshops with other organizations. Our webinar series focused on new code features and use of geodynamics modeling in teaching. We continued work with the CIG community and other relevant communities to develop methods to provide attribution and citation of scientific software (Software Attribution for Geoscience Applications, SAGA). We tracked various metrics aimed at measuring the impact of CIG’s activities, including participation in events, downloads of software (Figure 1), and (when available) presentations and publications that use CIG software. The geodynamics.org website contains a searchable database of CIG associated publications. -
The U.S. Department of Energy Computational Science Graduate Fellowship 1991-2011 Recipient Outcomes and Programmatic Impacts
The U.S. Department of Energy Computational Science Graduate Fellowship 1991-2011 Recipient Outcomes and Programmatic Impacts Submitted by the Krell Institute The U.S. Department of Energy Computational Science Graduate Fellowship 1991-2011 Recipient Outcomes and Programmatic Impacts Prepared for the Krell Institute Under Grant Award No. DE-FG0297ER25308 September 2012 This report was prepared by C.L. McNeely, Ph.D., with logistical support from the Krell Institute. Table of Contents Executive Summary ................................................................................................................ iii Introduction .......................................................................................................................... 1 Who Will Do (Computational) Science?: The Big Picture ................................. 15 Integrated Profiles and Community Development ............................................... 37 Interviews and Fellow Perspectives ........................................................................... 47 Conclusion .............................................................................................................................. 73 References .............................................................................................................................. 77 About the Author ..................................................................................................................... 81 Appendix A: Methodological Notes ........................................................................... -
Curriculum Vitae: William W
Fall 2019 Curriculum Vitae: William W. Symes Education AB, University of California, Berkeley, August 1971 (Mathematics) Ph.D., Harvard University, June 1975 (Mathematics) Professional Experience [7/17-] Noah G. Harding Professor Emeritus, Computational and Applied Mathematics, Rice University [7/17-12/19] Research Professor, Computational and Applied Mathematics, Rice University [7/08-6/17] Professor, Earth Science, Rice University [1/02-6/05] and [7/92-6/95]: Chair, Computational and Applied Mathematics, Rice Univer- sity [6/99-6/17] Noah G. Harding Professor, Computational and Applied Mathematics, Rice Uni- versity [6/98-6/17] Co-director, Center for Computational Geophysics, Rice University [9/98-7/99] Visiting Professor, Stanford University [1/92-] Director, The Rice Inversion Project [5/89, 5/94] Visiting Professor, University of Paris IX [7/83-6/99] Professor, Computational and Applied Mathematics, Rice University [8/82-6/85] Visiting Professor and Associate Professor, Theoretical and Applied Mechanics, Cornell University (part time) [9/79-6/85] Associate and Assistant Professor, Mathematics, Michigan State University [9/77-8/79] Visiting Assistant Professor, Mathematics Research Center, University of Wis- consin [9/74-8/77] Visiting Lecturer, Mathematics, University of British Columbia Editorial Boards Computational Geoscience, Associate Editor, 2015-2018 Inverse Problems, Editor-in-Chief, January 2005 - December 2009; International Advisory Board, 1990-95 and 2010-present. Multiscale Modeling and Simulation, 2002-2006. 1 Mod´elisationMath´ematiqueet Analyse Num´erique, 1998-2005 Computational Geoscience, 1995-2006 SIAM Journal on Applied Mathematics, 1988-94 Professional Societies Society for Industrial and Applied Mathematics (Fellow) Society of Exploration Geophysicists American Geophysical Union Institute of Physics (Fellow) Selected Honors, Awards, and Activities Distinguished Lecturer, Society of Exploration Geophysicists, January-June 2018 Desiderius Erasmus Award, European Association of Geoscientists and Engineers, 2015. -
To Download the SC13 Conference Program
Conference Program HPC Everywhere, Everyday Conference Dates: November 17-22, 2013 Exhibition Dates:November 18-21, 2013 Denver Convention Center Denver, CO The International Conference for Sponsors: High Performance Computing, Networking, Storage and Analysis Table of 3 Welcome from theContents Chair 64 Posters/Scientific Visualization Showcase 4 Acknowledgements 5 Governor’s Welcome 65 Research Posters 83 ACM Student Research Competition 6 What’s New at SC13 Posters 88 Scientific Visualization Showcase 7 General Information 93 Tutorials 8 Registration and Conference Store 8 Exhibit Hall Hours 103 Workshops 8 SC13 Information Booth 8 SC14 Preview Booth 111 Birds of a Feather/ACM SIGHPC Meeting 8 SC 25th Anniversary 8 Social Events 127 Emerging Technologies 9 Conference Services/Convention Center Facilities 132 Exhibitor Forum/HPC Impact 11 Registration Pass Access Showcase 13 Map/Daily Schedules 133 Exhibitor Forum 142 HPC Impact Showcase 14 Downtown Area Map 15 Meeting Room Layout 147 HPC Interconnections 16 Daily Schedules 148 Broader Engagement/HPC Educators 24 Keynote/Invited Talks/Panels 157 Doctoral Showcase 25 Keynote 163 Student Cluster Competition 25 Invited Talks 164 Experiencing HPC for 34 Panels Undergraduates 36 Awards 165 SCinet 40 Papers 166 Network Research Exhibition 170 SC Silver Anniversary Exhibits 171 SC14 Call for Participation Welcome 3 future of HPC. Far from being just a simple industry Welcome to SC13 exhibition, our research and industry booths showcase Bill Gropp, SC13 General Chair recent developments in our field, with a rich combination of research labs, universities, and other organizations and vendors Long-time HPC community members of all types of software, hardware, and services for HPC. -
FROM the GALACTIC to the ATOMIC Practicum Takes Paul Sutter Deep Into Inner Space
THE ANNUAL HIP 2011 S ELLOW F UATE UATE D RA G E C IEN C DEIXIS NERGY COMPUTATIONAL S NERGY COMPUTATIONAL E DEPARTMENT OF DEPARTMENT FROM THE GALACTIC TO THE ATOMIC Practicum Takes Paul Sutter Deep into Inner Space PAGE 5 Ying Hu’s Road Trips Lead to Scattering Discoveries PAGE 9 THE ANNUAL TABLE OF CONTENTS DEIXIS 9 22 DEIXIS, The DOE CSGF Annual is published by the Krell Institute. Krell administers the Department of Energy Computational Science Graduate Fellowship (DOE CSGF) program for the DOE under contract DE-FG02-97ER25308. For additional information about the DOE CSGF program, the Krell Institute or topics covered in this publication, please contact: 5 24 26 Editor, DEIXIS Krell Institute 1609 Golden Aspen Drive, Suite 101 Ames, IA 50010 (515) 956-3696 www.krellinst.org/csgf A TOAST TO 20 YEARS 4 22 28 Copyright 2011 Krell Institute. Practicum Profiles Alumni Profiles Winning Essays All rights reserved. In 1991, the fates of two A Season of Discovery From Alumni to Leaders Encouraging Communication technological tools — the Internet and computational science — became 5 Paul Sutter 22 Brian Moore 28 Kenley Pelzer, Winner DEIXIS (ΔΕΙΞΙΣ — pronounced da¯ksis) transliterated linked in the High-Performance Fellow Spans Scales from A Career at the Can Peeling an Onion from classical Greek into the Roman alphabet, means a display, mode or process of proof; the process of Computing and Communications the Universal to the Atomic Nuclear Intersection Cure Cancer? showing, proving or demonstrating. DEIXIS can Act. The law backed creation of the “information superhighway,” but also refer to the workings of an individual’s keen intellect, or to the means by which such individuals, also directed the Department of Energy (DOE) to support computational 9 Ying Hu 24 Dan Martin 30 Hayes Stripling, e.g.