(Phoenix Dactylifera L.) SEEDS
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PALM-IST: Pathway Assembly from Literature Mining
www.nature.com/scientificreports OPEN PALM-IST: Pathway Assembly from Literature Mining - an Information Search Tool Received: 06 September 2014 Accepted: 18 February 2015 Sapan Mandloi & Saikat Chakrabarti Published: 19 May 2015 Manual curation of biomedical literature has become extremely tedious process due to its exponential growth in recent years. To extract meaningful information from such large and unstructured text, newer and more efficient mining tool is required. Here, we introduce PALM-IST, a computational platform that not only allows users to explore biomedical abstracts using keyword based text mining but also extracts biological entity (e.g., gene/protein, drug, disease, biological processes, cellular component, etc.) information from the extracted text and subsequently mines various databases to provide their comprehensive inter-relation (e.g., interaction, expression, etc.). PALM-IST constructs protein interaction network and pathway information data relevant to the text search using multiple data mining tools and assembles them to create a meta-interaction network. It also analyzes scientific collaboration by extraction and creation of “co-authorship network,” for a given search context. Hence, this useful combination of literature and data mining provided in PALM- IST can be used to extract novel protein-protein interaction (PPI), to generate meta-pathways and further to identify key crosstalk and bottleneck proteins. PALM-IST is available at www.hpppi.iicb. res.in/ctm. Biomedical research has shifted from studying individual gene and protein to complete biological sys- tem. In today’s age of “big data biology” embraced with overwhelming amount of publication records and of high-throughput data, automated and efficient text and data mining platforms are absolutely essential to access and present biological information into more computable and comprehensible form1–3. -
Tamarind 1990 - 2004
Tamarind 1990 - 2004 Author A. K. A. Dandjouma, C. Tchiegang, C. Kapseu and R. Ndjouenkeu Title Ricinodendron heudelotii (Bail.) Pierre ex Pax seeds treatments influence on the q Year 2004 Source title Rivista Italiana delle Sostanze Grasse Reference 81(5): 299-303 Abstract The effects of heating Ricinodendron heudelotii seeds on the quality of the oil extracted was studied. The seeds were preheated by dry and wet methods at three temperatures (50, 70 and 90 degrees C) for 10, 20, 30 and 60 minutes. The oil was extracted using the Soxhlet method with hexane. The results showed a significant change in oil acid value when heated at 90 degrees C for 60 minutes, with values of 2.76+or-0.18 for the dry method and 2.90+or-0.14 for the wet method. Heating at the same conditions yielded peroxide values of 10.70+or-0.03 for the dry method and 11.95+or-0.08 for the wet method. Author A. L. Khandare, U. Kumar P, R. G. Shanker, K. Venkaiah and N. Lakshmaiah Title Additional beneficial effect of tamarind ingestion over defluoridated water supply Year 2004 Source title Nutrition Reference 20(5): 433-436 Abstract Objective: We evaluated the effect of tamarind (Tamarindus indicus) on ingestion and whether it provides additional beneficial effects on mobilization of fluoride from the bone after children are provided defluoridated water. Methods: A randomized, diet control study was conducted in 30 subjects from a fluoride endemic area after significantly decreasing urinary fluoride excretion by supplying defluoridated water for 2 wk. -
Identification of Long-Lived Synaptic Proteins by Proteomic Analysis Of
Identification of long-lived synaptic proteins by PNAS PLUS proteomic analysis of synaptosome protein turnover Seok Heoa,1, Graham H. Dieringa,1, Chan Hyun Nab,c,d,e,1, Raja Sekhar Nirujogib,c, Julia L. Bachmana, Akhilesh Pandeyb,c,f,g,h, and Richard L. Huganira,i,2 aSolomon H. Snyder Department of Neuroscience, Johns Hopkins University School of Medicine, Baltimore, MD 21205; bDepartment of Biological Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD 21205; cMcKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21205; dDepartment of Neurology, Johns Hopkins University School of Medicine, Baltimore, MD 21205; eInstitute for Cell Engineering, Johns Hopkins University School of Medicine, Baltimore, MD 21205; fDepartment of Oncology, Johns Hopkins University School of Medicine, Baltimore, MD 21205; gDepartment of Pathology, Johns Hopkins University School of Medicine, Baltimore, MD 21205; hManipal Academy of Higher Education, Manipal 576104, Karnataka, India; and iKavli Neuroscience Discovery Institute, Johns Hopkins University, Baltimore, MD 21205 Contributed by Richard L. Huganir, February 28, 2018 (sent for review December 4, 2017; reviewed by Stephen J. Moss and Angus C. Nairn) Memory formation is believed to result from changes in synapse the eye and cartilage, respectively, last for decades. Components strength and structure. While memories may persist for the lifetime of the nuclear pore complex of nondividing cells and some his- of an organism, the proteins and lipids that make up synapses tones have also been shown to last for years (12–15). The ex- undergo constant turnover with lifetimes from minutes to days. The treme stability of some of these proteins is obviously critical for molecular basis for memory maintenance may rely on a subset of the structural integrity of relatively metabolically inactive regions long-lived proteins (LLPs). -
Data Sheet Caryodendron Orinocense Seed Oil 1
AMAZÒNICA DE COLOMBIA DATA SHEET CARYODENDRON ORINOCENSE SEED OIL 1. Description General Caryodendron orinocense seed oil known as Cacay, come from a native species of the amazon Región, which is obtained from cold pressing of the seed Caryodendron Orinocense commonly called inchi, cahay, tree peanut. It es 100% natural and the seeds come from trees located in the Andean Amazon foothills of the Department of Putumayo – Colombia. It is rich in vitamin A, linoleic acid and vitamin E, making it a miraculous product for skin care, slowing aging and promoting rejuvenation, making it perfect for treating scars, stretch marks and skin spots 2. Physicochemical and Organoleptic Properties Cacay oil Tabla 1 Physicochemical characterization INGREDIENT ANALYSIS LABORATORY TEST METHOD SPECIFICATION AOAC Density (g/ml) 0,9192 962.37 Index of AOAC saponification 213,83 ± 4,44 920.160 (mg KOH/ g) Índex of Iodine(g AOAC 174,23 ± 0.1 Iodo/100 g ) 993.20 PHYSICOCHEMICAL Index of peroxide AOAC 5,2 ± 0.09 (mg eq O2 /kg 965.33 Índice de acidic (% ISO 2,1 ± 0,15 ácid. free) 660:1996 Water Solubility Insoluble (1/10) Solubility in Soluble USP alcohol (1/10) Solubility in Soluble mineral oil (1/10) VILLAGARZÒN PUTUMAYO Email: [email protected] www.amazonicadecolombiain.com 317 669 3456 – 315 808 8506 AMAZÒNICA DE COLOMBIA TAB LA 2 Organoleptic Characteristics LABORATORY INGREDIENT ANALYSIS METHOD TEST SPECIFICATION Condition Liquid ORGANOLEPTIC Appearance Traslucent Organoleptic Color Yellow Smell Characteristic Pleasant ABSORPTION: It is light and absorbs quickly 3. Antioxidant Cacay oil has a superior antioxidant profile, when compared to other vegetable oils such as olive oil, reaching a percentage of radical inhibition after 3 hours of 90%; thus, it is capable of delaying or preventing the oxidation of other molecules, preventing skin aging. -
Accelerated Ripening of Kabkab Dates Using Sodium Chloride and Acetic Acid Solutions
Iran Agricultural Research, Vol. 27, No. 1-2, 2008 and Vol. 28 No. 1, 2009 Printed in the Islamic Republic of Iran Shiraz University "Research Note" Accelerated Ripening of Kabkab Dates Using Sodium Chloride and Acetic Acid Solutions A. FARAHNAKY1**, H. ASKARI1*, M. BAKHTIYARI1* AND M. MAJZOOBI1* 1Department of Food Science and Technology, College of Agriculture, Shiraz University, Shiraz, I.R. Iran ABSTRACT-In this research, the accelerated ripening of the Kabkab dates from Khalal to Tamr using NaCl and acetic acid solutions was studied. Fruits at Khalal stage were harvested and washed with distilled water before being treated with ripening inducers: 1. NaCl solutions, 2. acetic acid solutions and 3. Aqueous solution of NaCl (1%) and acetic acid. moisture, pH, colour, brix and textural firmness of the samples were monitored. Results indicated that during ripening the moisture content and colour changed significantly. The major change was observed for firmness where a maximum force for puncture test varied from about 1000 to 50 g force for all samples after 72 hours of incubation at 40 °C. Harvesting at Khalal stage followed by treating the fruits with NaCl and/or acetic acid solutions and an incubation stage at 40 °C showed to be a promising method for accelerated ripening. Keywords: Accelerated ripening, Acetic acid, Kabkab dates, NaCl, INTRODUCTION Date palm fruit (Phoenix dactylifera L.) is an important agricultural product of Iran and many Arabic countries. Dates are rich in certain nutrients and provide a good source of rapidly available energy due to their high carbohydrate content (70-80%). Most of the carbohydrates in dates are in the form of fructose, glucose and sucrose, which are easily digested by the human body. -
Notes Clarifying the Status on Some Ethnobotanical Species from the Ecuadorian Amazon Carmen X
SHORT NOTES Mediterranean Botany ISSNe 2603-9109 http://dx.doi.org/10.5209/MBOT.60367 Notes clarifying the status on some ethnobotanical species from the Ecuadorian Amazon Carmen X. Luzuriaga-Quichimbo1, Pedro Escobar García2, Carlos E. Cerón-Martínez3, José Blanco- Salas3 & Trinidad Ruiz-Téllez3 Received: 28 May 2018 / Accepted: 22 January 2019 / Published online: 20 February 2019 Abstract. Despite belonging to one of the most biodiverse ecoregions on Earth, the Ecuadorian Amazon remains largely unexplored. During the elaboration of an ethnobotanical checklist of the useful plants in the Kichwa community of Pakayaku (Pastaza, Ecuador), we faced taxonomical difficulties due to the lack of basic information and unknown location of type specimens for several plant names. In this contribution, we present notes clarifying the status of six taxa of the H. Karsten and E. F. Poeppig names and locate the corresponding type specimens at the herbarium W (Natural History Museum, Vienna). Keywords: plant biodiversity, Caryodendron, Erythrina, Inga, Marila, Swartzia, Tetrorchidium, typification, H. Karsten, E. F. Poeppig, Vienna Natural History Museum, Ecuadorian Amazon. Notas aclaratorias sobre algunas especies etnobotánicas de la Amazonía ecuatoriana Resumen. A pesar de pertenecer a una de las ecorregiones más biodiversas de la Tierra, la Amazonía ecuatoriana permanece en gran parte inexplorada. Durante la elaboración de una lista de comprobación etnobotánica de las plantas útiles en la comunidad Kichwa de Pakayaku (Pastaza, Ecuador), enfrentamos dificultades taxonómicas debido a la falta de información básica y la ubicación desconocida de los tipos de especímenes para varios nombres de plantas. En esta contribución, presentamos notas que aclaran el estado de los nombres de seis taxones de H. -
Characterization of Inchi (Caryodendron Orinocense Karsten) Seeds Viability from Two Regions
Caracterización de la viabilidad de semillas de inchi (Caryodendron orinocense Karsten) de dos procedencias Characterization of inchi (Caryodendron orinocense Karsten) seeds viability from two regions Judith J. GARCÍA B. y Carmen BASSO Instituto de Agronomía, Facultad de Agronomía, Universidad Central de Venezuela. Avenida Universidad, vía el Limón. Apartado Postal 4579, Maracay, estado Aragua. Venezuela. E-mails: [email protected] y [email protected] Autor para correspondencia Recibido: 06/10/2010 Fin de primer arbitraje: 09/01/2012 Primera revisión recibida: 01/02/2012 Fin de segundo arbitraje: 24/02/2012 Segunda revisión recibida: 23/04/2012 Aceptado: 16/05/2012 RESUMEN Para caracterizar la viabilidad de semillas de inchi (Caryodendron orinocense Karsten) se utilizaron frutos recolectados en 2008, en Aragua, Venezuela. Se secaron durante cuatro días en bandejas y diariamente se colocaron muestras en envases con arena húmeda para determinar su emergencia. Hubo cinco tratamientos considerando los días transcurridos desde la extracción de las semillas (dde), el diseño fue en bloques al azar (DBA) con dos repeticiones de diez semillas. A 28 días de la siembra (dds), el porcentaje de emergencia fue 75% y a los 32 dds el porcentaje de plántulas que presentaron sus dos hojas cotiledonares sanas y bien desarrolladas fue 65% para semillas recién extraídas (0 dde). En ambos casos no hubo diferencias estadísticas, usando Friedman, entre 0, 1 y 2 dde pero si con 3 y 4 dde con menores porcentajes. Para evaluar cambios en peso y humedad en las semillas y condiciones adecuadas de almacenamiento se utilizaron semillas recolectadas en 2009, en Barinas, Venezuela. Se planteó un diseño factorial 6x3 en DBA con tres repeticiones. -
A Brief History of the Origin of Domesticated Date Palms
A brief history of the origin of domesticated date palms Gros-Balthazard, Muriel 1 & Flowers, Jonathan M.1 1 Center for Genomics & Systems Biology, New York University Abu Dhabi, Abu Dhabi, United Arab Emirates Abstract The study of the origins of crops is of interest from both a fundamental evolutionary understanding viewpoint, and from an applied agricultural technology perspective. The date palm (Phoenix dactylifera L.) is the iconic fruit crop of hot and arid regions of North Africa and the Middle East, producing sugar-rich fruits, known as dates. There are many different cultivars each with distinctive fruit traits, and there are many wild Phoenix species too, which in total form a complex of related species. The understanding of plant domestication involves multiple disciplines, including phylogeography, population genetics and archaeology. In the past decade, they have prompted new discoveries on the evolutionary history of date palm, but a complete understanding of its origins remains to be elucidated, along with the genetic architecture of its domestication syndrome. In this chapter, we review the current state of the art regarding the origins of the domesticated date palm. We first discuss whether date palms are domesticated, and highlight how they diverge from their wild Phoenix relatives. We then outline patterns in the population genetic and archaeobotanical data, and review different models for the origins of domesticated date palms by highlighting sources of evidence that are either consistent or inconsistent with each model. We then review the process of date palm domestication, and emphasize the human activities that have prompted its domestication. We particularly focus on the evolution of fruit traits. -
View Annual Report
ANNUAL REPORT CONTENT Founders’ Letter 03 Scope of Work 04 Strategic Directions 06 ACT Advances in 2017 16 Feature Stories 17 Financial Overview 21 We see a future where healthy tropical Board / Leadership 26 forests and thriving local communities exist in harmonious relationship with ACT Team 27 each other, contributing to the well-being of the planet. In Memoriam 29 ANNUAL REPORT 02 ACT Annual Report Page 03 FOUNDERS’ LETTER We see a future where healthy tropical forests and thriving local Our 2020 goals assertively respond to these challenges. Among communities exist in harmonious relationship with each other, our primary goals is to expand our impact, direct and indirect. contributing to the well-being of the planet. Cognizant of the need to work with whole ecosystems, we seek to grow into other regions and countries that share borders with This is ACT’s vision, the horizon we work towards in alliance with the traditional lands of our partner communities, as in the case like-minded peoples and organizations around the world. How of a recent invitation from the leadership of French Guiana’s far ahead this lies depends on vastly more than our efforts as Parc Amazonien de Guyane to apply lessons learned by ACT in political, environmental, and economic challenges subside, neighboring Suriname. We also plan to develop instructional grow, and emerge. models from our successful programs, which we will make available to indigenous rights movements and the conservation Yet no matter the shape of the landscape, ACT is unyielding in community at large, having started with a guide to indigenous the fundamental belief that we can and will reach this horizon. -
UM AL-IRAQ (THE DATE PALM TREE) the Life and Work of Dr
UM AL-IRAQ (THE DATE PALM TREE) The Life and Work of Dr. Rashad Zaydan of Iraq By Nikki Lyn Pugh, Peace Writer Edited by Kaitlin Barker Davis 2011 Women PeaceMakers Program Made possible by the Fred J. Hansen Foundation *This material is copyrighted by the Joan B. Kroc Institute for Peace & Justice. For permission to cite, contact [email protected], with “Women PeaceMakers – Narrative Permissions” in the subject line. UM AL-IRAQ (THE DATE PALM TREE) ZAYDAN – IRAQ TABLE OF CONTENTS I. A Note to the Reader …………………………………………………………. 4 II. About the Women PeaceMakers Program …………………………………… 4 III. Biography of a Woman PeaceMaker — Dr. Rashad Zaydan ….……………… 5 IV. Conflict History — Iraq………………………………………………………… 7 V. Map — Iraq ……………………………………………………………………. 14 VI. Integrated Timeline — Political Developments and Personal History ………… 15 VII. Dedication …………………………………………………………………….. 22 VIII. Narrative Stories of the Life and Work of Dr. Rashad Zaydan 23 ُ UM AL-IRAQ 24 ُّ ُّ ُّ أمُّ ُّالعُّــ راق ُُُُُّّّّّ ُُُُُُُُُّّّّّّّّّ ّأولُّث ُّمَرَةُُُُُّّّّّ FIRST FRUIT 25 ُُُُّّّّالنُّ ـــشــأْة I. GROWING UP a. The Dawn’s Prayer …………………………………………………………. 26 b. Memories of Al Mansur ……………………………………………..……… II. MEHARAB AL NOOR/TEMPLES OF LIGHT 29 م ُحــرابُّالنّـــــور c. Beauty in Diversity …………………………………………………………. 31 d. The Day of Ashura ………………………………………………………… 32 e. Summer School ……………………………………………………………. 34 f. The First Spark …………………………………………………………….. 35 g. A Place for Prayer …………………………………………………………. 37 h. Postscript: The Most Advanced Degree ……………………………………. 39 ُُُُّّّّالحـــــربُّ والعقوباتُّ)الحصار(ُُُُّّّّ III. WAR AND SANCTIONS 42 َ ُ ُ ّ i. The Meaning of Marriage ………….………………………………………. 44 j. Baiji ………….……………………………………….……………………. 45 k. Wishing for Stability …………………….…………………………………. 46 l. Kuwait………………….………………………………………………….. 49 m. The Charity Clinic ………….……………………………………………… n. Postscript: The Empty House ………….………………………………….. 51 52 ا لُّحـــــــتـــــــﻻل IV. -
Local Practices and Knowledge Associated with Date Palm Cultivation in Southeastern Niger
Agricultural Sciences, 2016, 7, 586-603 http://www.scirp.org/journal/as ISSN Online: 2156-8561 ISSN Print: 2156-8553 Local Practices and Knowledge Associated with Date Palm Cultivation in Southeastern Niger Oumarou Zango1,2,3, Hervé Rey1, Yacoubou Bakasso2, René Lecoustre1, Frédérique Aberlenc4, Jean-Christophe Pintaud4 1UMR AMAP, CIRAD, Montpellier, France 2Faculty of Sciences and Technologies, University of Niamey, Niamey, Niger 3Montpellier University, Montpellier, France 4F2F-Palms Group, UMR DIADE, IRD, Montpellier, France How to cite this paper: Zango, O., Rey, H., Abstract Bakasso, Y., Lecoustre, R., Aberlenc, F. and Pintaud, J.-C. (2016) Local Practices and The date palm (Phoenix dactylifera L.), a dioecious species, is of particular interest in Knowledge Associated with Date Palm the Sahel due to its phenological plasticity in relation to climate change and its dou- Cultivation in Southeastern Niger. Agricul- ble-flowering capacity. This article explores local practices and knowledge associated tural Sciences, 7, 586-603. http://dx.doi.org/10.4236/as.2016.79056 with date palm cultivation in the oasis basins of southeastern Niger, and provides an inventory of local seed propagated varieties, for more effectively guiding agricultural Received: July 7, 2016 research and the breeding of this species. We carried out a survey of 30 date palm Accepted: September 10, 2016 Published: September 14, 2016 growers in 14 villages of the Manga region. The qualitative data of the survey were processed by a Multiple Correspondence Analysis. We inventoried 19 date palm va- Copyright © 2016 by authors and rieties, for which the main distinctive criterion was fruit colour, but some other cri- Scientific Research Publishing Inc. -
Date (Phoenix Dactylifera L.) Varieties Grown in Oman , J Agric Food Chem , 53 , 7586 – 91
4 Date ( Phoenix dactylifera L.) E. M. Yahia, Autonomous University of Queretaro, Mexico and A. A. Kader, University of California, Davis, USA Abstract: Dates have been an important basic food for several cultures over thousands of years and they are still consumed widely all over the world, especially in the Middle East and North Africa. Date palms grow in several countries, but the industry is still concentrated in the Middle East and North Africa. Over 7 million tons of dates are produced annually, but only about 10% enters world trade. Dates are a nutritious, high-energy food, consumed fresh, dried or in various processed forms. Fruit of some dry date cultivars are not very perishable, and can thus easily be shipped to distant markets and be stored for prolonged periods. In contrast, the shelf life of some moist (soft or syrupy) date cultivars is limited to a few days unless special care is taken to maintain the cold chain between harvest and consumption sites. However, postharvest losses are high due to diverse physical, physiological, pathological and insect problems. Dates adapt very well to very low temperatures, and therefore storage and shipping at low temperatures is the most important method of maintaining quality. Low temperatures signifi cantly reduce losses of colour, fl avour, and textural quality; and delay development of sugar spotting, incidence of moulds and yeasts, and insect infestation; and prevent development of syrupiness and souring of soft, moist dates. Key words: Phoenix dactylifera , postharvest, nutritional quality, health benefi ts, insects, storage, processing. 4.1 Introduction Fruits of the date palm, Phoenix dactylifera L., have been a staple food for the population of the Middle East and North Africa for thousands of years (Yahia, 2005).