Manual of Experimentation in Planaria
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Supplementary Material
Supplementary Material Table S1. Characteristics of volunteer groups (student classes), according to the scholar degree (covering degrees from the 5th to the 12th years of scholarity), mean age of the students, number of teachers involved and number of students for each class. A few schools merged different classes in the same group; those cases correspond to two to three scholar degrees or two to three mean ages. Degree Mean Age Teachers Students 5th 11 3 40 12th 17 3 12 5th 11 2 20 5th 12 2 27 5th 11 3 25 7th 12 3 17 8th 13 2 20 8th 13 1 39 9th,11th,12th 16 3 66 10th 15 3 23 8th 13 1 26 10th 15 3 38 8th 13 2 12 8th 13 2 14 8th 13 1 23 9th 14 1 6 8th 13 3 23 10th 15 1 11 9th 14 1 4 7th 12 3 24 8th 13 3 23 5th .10, 11 3 20 8th 13 3 23 7th,8th 13 3 12 8th 13 3 25 10th 15 3 25 10th 15 3 25 10th 15 2 25 10th 15 2 25 11th,12th 16, 17 3 19 11th,12th 16, 18 3 19 11th,12th 16, 17 3 19 11th,12th 16, 17 3 19 8th 13 3 15 8th 13 3 23 5th .10, 11 1 20 Table S2. Categories in the field form distributed by the four main descriptors. Settlements on the State of Stream Land Use Stream the Water Characteristics tourism mures none perceptible flow natural golf tubes laminar flow intermediary camping spring turbulent flow altered agriculture well no smell Pasture channel mud smell farm mill waste smell forest dam clean water industry brown water waste water treatment plant black water (wwtp) constructions soft green water road hard green water Table S3. -
The History and Enduring Contributions of Planarians to the Study of Animal Regeneration Sarah A
Advanced Review The history and enduring contributions of planarians to the study of animal regeneration Sarah A. Elliott1,2 and Alejandro Sanchez´ Alvarado1,2∗ Having an almost unlimited capacity to regenerate tissues lost to age and injury, planarians have long fascinated naturalists. In the Western hemisphere alone, their documented history spans more than 200 years. Planarians were described in the early 19th century as being ‘immortal under the edge of the knife’, and initial investigation of these remarkable animals was significantly influenced by studies of regeneration in other organisms and from the flourishing field of experimental embryology in the late 19th and early 20th centuries. This review strives to place the study of planarian regeneration into a broader historical context by focusing on the significance and evolution of knowledge in this field. It also synthesizes our current molecular understanding of the mechanisms of planarian regeneration uncovered since this animal’s relatively recent entrance into the molecular-genetic age. © 2012 Wiley Periodicals, Inc. How to cite this article: WIREs Dev Biol 2012. doi: 10.1002/wdev.82 PLANARIANS AND THEIR HISTORICAL development, epigenesis eventually took center stage CONTEXT as one of the most important principles of biology.1 The earliest known description of animal regen- he study of regeneration has a rich, intertwined eration came from Aristotle around 350 BCE. Among Thistory with experimental embryology. In the other things, he described that the tails of lizards 17th century, naturalists contemplated two ancient regenerate.2 In 1686, Thevenot,´ Perrault, and Duver- paradigms for thinking about embryology: preforma- ney revived this finding.3 This rediscovery of regener- tionism versus epigenesis. -
Occurrence of the Land Planarians Bipalium Kewense and Geoplana Sp
Journal of the Arkansas Academy of Science Volume 35 Article 22 1981 Occurrence of the Land Planarians Bipalium kewense and Geoplana Sp. in Arkansas James J. Daly University of Arkansas for Medical Sciences Julian T. Darlington Rhodes College Follow this and additional works at: http://scholarworks.uark.edu/jaas Part of the Terrestrial and Aquatic Ecology Commons Recommended Citation Daly, James J. and Darlington, Julian T. (1981) "Occurrence of the Land Planarians Bipalium kewense and Geoplana Sp. in Arkansas," Journal of the Arkansas Academy of Science: Vol. 35 , Article 22. Available at: http://scholarworks.uark.edu/jaas/vol35/iss1/22 This article is available for use under the Creative Commons license: Attribution-NoDerivatives 4.0 International (CC BY-ND 4.0). Users are able to read, download, copy, print, distribute, search, link to the full texts of these articles, or use them for any other lawful purpose, without asking prior permission from the publisher or the author. This General Note is brought to you for free and open access by ScholarWorks@UARK. It has been accepted for inclusion in Journal of the Arkansas Academy of Science by an authorized editor of ScholarWorks@UARK. For more information, please contact [email protected], [email protected]. Journal of the Arkansas Academy of Science, Vol. 35 [1981], Art. 22 GENERAL NOTES WINTER FEEDING OF FINGERLING CHANNEL CATFISH IN CAGES* Private warmwater fish culture of channel catfish (Ictalurus punctatus) inthe United States began inthe early 1950's (Brown, E. E., World Fish Farming, Cultivation, and Economics 1977. AVIPublishing Co., Westport, Conn. 396 pp). Early culture techniques consisted of stocking, harvesting, and feeding catfish only during the warmer months. -
Tec-1 Kinase Negatively Regulates Regenerative Neurogenesis in Planarians Alexander Karge1, Nicolle a Bonar1, Scott Wood1, Christian P Petersen1,2*
RESEARCH ARTICLE tec-1 kinase negatively regulates regenerative neurogenesis in planarians Alexander Karge1, Nicolle A Bonar1, Scott Wood1, Christian P Petersen1,2* 1Department of Molecular Biosciences, Northwestern University, Evanston, United States; 2Robert Lurie Comprehensive Cancer Center, Northwestern University, Evanston, United States Abstract Negative regulators of adult neurogenesis are of particular interest as targets to enhance neuronal repair, but few have yet been identified. Planarians can regenerate their entire CNS using pluripotent adult stem cells, and this process is robustly regulated to ensure that new neurons are produced in proper abundance. Using a high-throughput pipeline to quantify brain chemosensory neurons, we identify the conserved tyrosine kinase tec-1 as a negative regulator of planarian neuronal regeneration. tec-1RNAi increased the abundance of several CNS and PNS neuron subtypes regenerated or maintained through homeostasis, without affecting body patterning or non-neural cells. Experiments using TUNEL, BrdU, progenitor labeling, and stem cell elimination during regeneration indicate tec-1 limits the survival of newly differentiated neurons. In vertebrates, the Tec kinase family has been studied extensively for roles in immune function, and our results identify a novel role for tec-1 as negative regulator of planarian adult neurogenesis. Introduction The capacity for adult neural repair varies across animals and bears a relationship to the extent of adult neurogenesis in the absence of injury. Adult neural proliferation is absent in C. elegans and *For correspondence: rare in Drosophila, leaving axon repair as a primary mechanism for healing damage to the CNS and christian-p-petersen@ northwestern.edu PNS. Mammals undergo adult neurogenesis throughout life, but it is limited to particular brain regions and declines with age (Tanaka and Ferretti, 2009). -
A Phylum-Wide Survey Reveals Multiple Independent Gains of Head Regeneration Ability in Nemertea
bioRxiv preprint doi: https://doi.org/10.1101/439497; this version posted October 11, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. A phylum-wide survey reveals multiple independent gains of head regeneration ability in Nemertea Eduardo E. Zattara1,2,5, Fernando A. Fernández-Álvarez3, Terra C. Hiebert4, Alexandra E. Bely2 and Jon L. Norenburg1 1 Department of Invertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington, DC, USA 2 Department of Biology, University of Maryland, College Park, MD, USA 3 Institut de Ciències del Mar, Consejo Superior de Investigaciones Científicas, Barcelona, Spain 4 Institute of Ecology and Evolution, University of Oregon, Eugene, OR, USA 5 INIBIOMA, Consejo Nacional de Investigaciones Científicas y Tecnológicas, Bariloche, RN, Argentina Corresponding author: E.E. Zattara, [email protected] Abstract Animals vary widely in their ability to regenerate, suggesting that regenerative abilities have a rich evolutionary history. However, our understanding of this history remains limited because regeneration ability has only been evaluated in a tiny fraction of species. Available comparative regeneration studies have identified losses of regenerative ability, yet clear documentation of gains is lacking. We surveyed regenerative ability in 34 species spanning the phylum Nemertea, assessing the ability to regenerate heads and tails either through our own experiments or from literature reports. Our sampling included representatives of the 10 most diverse families and all three orders comprising this phylum. -
The Effect of Caffeine and Ethanol on Flatworm Regeneration
East Tennessee State University Digital Commons @ East Tennessee State University Electronic Theses and Dissertations Student Works 8-2007 The ffecE t of Caffeine nda Ethanol on Flatworm Regeneration. Erica Leighanne Collins East Tennessee State University Follow this and additional works at: https://dc.etsu.edu/etd Part of the Chemical and Pharmacologic Phenomena Commons Recommended Citation Collins, Erica Leighanne, "The Effect of Caffeine nda Ethanol on Flatworm Regeneration." (2007). Electronic Theses and Dissertations. Paper 2028. https://dc.etsu.edu/etd/2028 This Thesis - Open Access is brought to you for free and open access by the Student Works at Digital Commons @ East Tennessee State University. It has been accepted for inclusion in Electronic Theses and Dissertations by an authorized administrator of Digital Commons @ East Tennessee State University. For more information, please contact [email protected]. The Effect of Caffeine and Ethanol on Flatworm Regeneration ____________________ A thesis presented to the faculty of the Department of Biological Sciences East Tennessee State University In partial fulfillment of the requirements for the degree Master of Science in Biology ____________________ by Erica Leighanne Collins August 2007 ____________________ Dr. J. Leonard Robertson, Chair Dr. Thomas F. Laughlin Dr. Kevin Breuel Keywords: Regeneration, Planarian, Dugesia tigrina, Flatworms, Caffeine, Ethanol ABSTRACT The Effect of Caffeine and Ethanol on Flatworm Regeneration by Erica Leighanne Collins Flatworms, or planarian, have a high potential for regeneration and have been used as a model to investigate regeneration and stem cell biology for over a century. Chemicals, temperature, and seasonal factors can influence planarian regeneration. Caffeine and ethanol are two widely used drugs and their effect on flatworm regeneration was evaluated in this experiment. -
New Zealand Flatworm
www.nonnativespecies.org Produced by Max Wade, Vicky Ames and Kelly McKee of RPS New Zealand Flatworm Species Description Scientific name: Arthurdendyus triangulatus AKA: Artioposthia triangulata Native to: New Zealand Habitat: Gardens, nurseries, garden centres, parks, pasture and on wasteland This flatworm is very distinctive with a dark, purplish-brown upper surface with a narrow, pale buff spotted edge and pale buff underside. Many tiny eyes. Pointed at both ends, and ribbon-flat. A mature flatworm at rest is about 1 cm wide and 6 cm long but when extended can be 20 cm long and proportionally narrower. When resting, it is coiled and covered in mucus. It probably arrived in the UK during the 1960s, with specimen plants sent from New Zealand to a botanic garden. It was only found occasionally for many years, but by the early 1990s there were repeated findings in Scotland, Northern Ireland and northern England. Native to New Zealand, the flatworm is found in shady, wooded areas. Open, sunny pasture land is too hot and dry with temperatures over 20°C quickly lethal to it. New Zealand flatworms prey on earthworms, posing a potential threat to native earthworm populations. Further spread could have an impact on wild- life species dependent on earthworms (e.g. Badgers, Moles) and could have a localised deleterious effect on soil structure. For details of legislation go to www.nonnativespecies.org/legislation. Key ID Features Underside pale buff Ribbon flat Leaves a slime trail Pointed at Numerous both ends tiny eyes 60 - 200 mm long; 10 mm wide Upper surface dark, purplish-brown with a narrow, pale buff edge Completely smooth body surface Forms coils when at rest Identification throughout the year Distribution Egg capsules are laid mainly in spring but can be found all year round. -
The Genome of Schmidtea Mediterranea and the Evolution Of
OPEN ArtICLE doi:10.1038/nature25473 The genome of Schmidtea mediterranea and the evolution of core cellular mechanisms Markus Alexander Grohme1*, Siegfried Schloissnig2*, Andrei Rozanski1, Martin Pippel2, George Robert Young3, Sylke Winkler1, Holger Brandl1, Ian Henry1, Andreas Dahl4, Sean Powell2, Michael Hiller1,5, Eugene Myers1 & Jochen Christian Rink1 The planarian Schmidtea mediterranea is an important model for stem cell research and regeneration, but adequate genome resources for this species have been lacking. Here we report a highly contiguous genome assembly of S. mediterranea, using long-read sequencing and a de novo assembler (MARVEL) enhanced for low-complexity reads. The S. mediterranea genome is highly polymorphic and repetitive, and harbours a novel class of giant retroelements. Furthermore, the genome assembly lacks a number of highly conserved genes, including critical components of the mitotic spindle assembly checkpoint, but planarians maintain checkpoint function. Our genome assembly provides a key model system resource that will be useful for studying regeneration and the evolutionary plasticity of core cell biological mechanisms. Rapid regeneration from tiny pieces of tissue makes planarians a prime De novo long read assembly of the planarian genome model system for regeneration. Abundant adult pluripotent stem cells, In preparation for genome sequencing, we inbred the sexual strain termed neoblasts, power regeneration and the continuous turnover of S. mediterranea (Fig. 1a) for more than 17 successive sib- mating of all cell types1–3, and transplantation of a single neoblast can rescue generations in the hope of decreasing heterozygosity. We also developed a lethally irradiated animal4. Planarians therefore also constitute a a new DNA isolation protocol that meets the purity and high molecular prime model system for stem cell pluripotency and its evolutionary weight requirements of PacBio long-read sequencing12 (Extended Data underpinnings5. -
Platyhelminthes: Tricladida: Terricola) of the Australian Region
ResearchOnline@JCU This file is part of the following reference: Winsor, Leigh (2003) Studies on the systematics and biogeography of terrestrial flatworms (Platyhelminthes: Tricladida: Terricola) of the Australian region. PhD thesis, James Cook University. Access to this file is available from: http://eprints.jcu.edu.au/24134/ The author has certified to JCU that they have made a reasonable effort to gain permission and acknowledge the owner of any third party copyright material included in this document. If you believe that this is not the case, please contact [email protected] and quote http://eprints.jcu.edu.au/24134/ Studies on the Systematics and Biogeography of Terrestrial Flatworms (Platyhelminthes: Tricladida: Terricola) of the Australian Region. Thesis submitted by LEIGH WINSOR MSc JCU, Dip.MLT, FAIMS, MSIA in March 2003 for the degree of Doctor of Philosophy in the Discipline of Zoology and Tropical Ecology within the School of Tropical Biology at James Cook University Frontispiece Platydemus manokwari Beauchamp, 1962 (Rhynchodemidae: Rhynchodeminae), 40 mm long, urban habitat, Townsville, north Queensland dry tropics, Australia. A molluscivorous species originally from Papua New Guinea which has been introduced to several countries in the Pacific region. Common. (photo L. Winsor). Bipalium kewense Moseley,1878 (Bipaliidae), 140mm long, Lissner Park, Charters Towers, north Queensland dry tropics, Australia. A cosmopolitan vermivorous species originally from Vietnam. Common. (photo L. Winsor). Fletchamia quinquelineata (Fletcher & Hamilton, 1888) (Geoplanidae: Caenoplaninae), 60 mm long, dry Ironbark forest, Maryborough, Victoria. Common. (photo L. Winsor). Tasmanoplana tasmaniana (Darwin, 1844) (Geoplanidae: Caenoplaninae), 35 mm long, tall open sclerophyll forest, Kamona, north eastern Tasmania, Australia. -
Classification Notes (Updated 2013).Pdf
Study of Life Classification The Amazing Diversity of LIFE!!!! • Diversity of Life – There are so many different creatures on Earth – Why are there differences? • Unity of life – All creatures have similarities – Common characteristics – Why are they so alike? Biology 2011-12 The Amazing Diversity of LIFE!!!! Biology 2011-12 Classifying Life • The Tree of Life – Organize creatures by structure & function • How they are built • How they live – Organize them into groups of closely related creatures Biology 2011-12 Eukaryote Classifying Life • 6 Kingdom system – Prokaryotes Prokaryote • No separate organelles in their cells • Ex. Bacteria • Ex. Archaebacteria – Eukaryotes • Separate organelles in their cells • Ex. Protists • Ex. Plants • Ex. Fungi • Ex. Animals Bacteria & Biology Archaebacteria 2011 -12 Prokaryotes Classifying Life Kingdom Kingdom Kingdom Bacteria Archaebacteria Protist Eukaryotes Kingdom Kingdom Kingdom Fungi Plant Animal Biology 2011-12 Classifying Life . Kingdom . Phylum . Class . Order . Family . Genus . species Biology 2011-12 Science History Moment • Carolus Linnaeus (1707-1778) . “Father of Modern Taxonomy” . Swedish botanist . Took complex system and simplified • Binomial nomenclature . Every organism has two names (in Latin- WHY?): — Genus name: noun — Species name: adjective • Published: Systema Naturae in 1735 . Reclassified plants using his binomial system (bi= two, nomial= name, two word naming) Biology 2011-12 Scientific Names • Standard Format . Every scientific name begins with the genus . Genus is capitalized -
A Comprehensive Comparison of Sex-Inducing Activity in Asexual
Nakagawa et al. Zoological Letters (2018) 4:14 https://doi.org/10.1186/s40851-018-0096-9 RESEARCH ARTICLE Open Access A comprehensive comparison of sex-inducing activity in asexual worms of the planarian Dugesia ryukyuensis: the crucial sex-inducing substance appears to be present in yolk glands in Tricladida Haruka Nakagawa1†, Kiyono Sekii1†, Takanobu Maezawa2, Makoto Kitamura3, Soichiro Miyashita1, Marina Abukawa1, Midori Matsumoto4 and Kazuya Kobayashi1* Abstract Background: Turbellarian species can post-embryonically produce germ line cells from pluripotent stem cells called neoblasts, which enables some of them to switch between an asexual and a sexual state in response to environmental changes. Certain low-molecular-weight compounds contained in sexually mature animals act as sex-inducing substances that trigger post-embryonic germ cell development in asexual worms of the freshwater planarian Dugesia ryukyuensis (Tricladida). These sex-inducing substances may provide clues to the molecular mechanism of this reproductive switch. However, limited information about these sex-inducing substances is available. Results: Our assay system based on feeding sex-inducing substances to asexual worms of D. ryukyuensis is useful for evaluating sex-inducing activity. We used the freshwater planarians D. ryukyuensis and Bdellocephala brunnea (Tricladida), land planarian Bipalium nobile (Tricladida), and marine flatworm Thysanozoon brocchii (Polycladida) as sources of the sex-inducing substances. Using an assay system, we showed that the three Tricladida species had sufficient sex-inducing activity to fully induce hermaphroditic reproductive organs in asexual worms of D. ryukyuensis. However, the sex-inducing activity of T. brocchii was sufficient only to induce a pair of ovaries. We found that yolk glands, which are found in Tricladida but not Polycladida, may contain the sex-inducing substance that can fully sexualize asexual worms of D. -
Curriculum Vitae
CURRICULUM VITAE Jochen C. Rink Director Department of Tissue Dynamics and Regeneration Max Planck Institute for Biophysical Chemistry Am Fassberg 11 I 37077 Göttingen I Germany E-mail: [email protected] Tel: +49 551 201 26100 Web: www.mpibpc.mpg.de/rink Birth date: October 18th, 1976 RESEARCH EXPERIENCE 2019- Director Max Planck Institute for Biophysical Chemistry in Göttingen, Germany 2011 - 2019 Independent Max Planck Research Group Leader Max Planck Institute of Molecular Cell Biology and Genetics in Dresden, Germany Distinctions: Awarded a Max “Free Floater” position with 2 competitive renewals since 2012 Affiliate Centre of Regenerative Therapies CRTD, Dresden, Germany 2006 – 2011 Postdoctoral Research Howard Hughes Institute, University of Utah, Salt Lake City, UT, USA EDUCATION 2005 Ph.D. Max Planck Institute for Molecular Cell Biology and Genetics, Dresden, Germany Grade: Summa cum laude Distinctions: Awarded the Max Planck-Society’s Otto Hahn Medal for outstanding thesis 2000 Bachelor of Arts Christ’s College, Cambridge University, Cambridge, UK Grade: First Class Honours Distinctions: SW Greig-Price for academic excellence in Natural Sciences: 98, 99 and 2000 AWARDS AND FELLOWSHIPS 2020 Deutsche Forschungsgemeinschaft award 2020 Behrens-Weise foundation award 1 2018 VolkswagenStiftung award 2015 EMBO Young Investigator award 2015 ERC Consolidator grant 2011 Max Planck Research Group 2006 EMBO Postdoctoral fellowship 2005 Otto Hahn Medal of the Max Planck Society for outstanding thesis research ORGANISATION OF SCIENTIFIC MEETINGS 2018 Organizer, EMBO workshop on “Size and Shape”, at NCBS in Bangalore, India 2018 Co-organizer, “3rd International Planarian Meeting”, Wisconsin, Madison, USA 2018 Co-organizer, EMBO YIP sectorial meeting on Morphogenesis, Marseille, France 2016 Organizer, “3nd European meeting on Planarian Biology”, St.