Insights from New Cestodes of the Crocodile Shark, Pseudocarcharias
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Northeastern Coyote/Coywolf Taxonomy and Admixture: a Meta-Analysis
Way and Lynn Northeastern coyote taxonomy Copyright © 2016 by the IUCN/SSC Canid Specialist Group. ISSN 1478-2677 Synthesis Northeastern coyote/coywolf taxonomy and admixture: A meta-analysis Jonathan G. Way1* and William S. Lynn2 1 Eastern Coyote Research, 89 Ebenezer Road, Osterville, MA 02655, USA. Email [email protected] 2 Marsh Institute, Clark University, Worcester, MA 01610, USA. Email [email protected] * Correspondence author Keywords: Canis latrans, Canis lycaon, Canis lupus, Canis oriens, cladogamy, coyote, coywolf, eastern coyote, eastern wolf, hybridisation, meta-analysis, northeastern coyote, wolf. Abstract A flurry of recent papers have attempted to taxonomically characterise eastern canids, mainly grey wolves Canis lupus, eastern wolves Canis lycaon or Canis lupus lycaon and northeastern coyotes or coywolves Canis latrans, Canis latrans var. or Canis latrans x C. lycaon, in northeastern North America. In this paper, we performed a meta-analysis on northeastern coyote taxonomy by comparing results across studies to synthesise what is known about genetic admixture and taxonomy of this animal. Hybridisation or cladogamy (the crossing between any given clades) be- tween coyotes, wolves and domestic dogs created the northeastern coyote, but the animal now has little genetic in- put from its parental species across the majority of its northeastern North American (e.g. the New England states) range except in areas where they overlap, such as southeastern Canada, Ohio and Pennsylvania, and the mid- Atlantic area. The northeastern coyote has roughly 60% genetic influence from coyote, 30% wolf and 10% domestic dog Canis lupus familiaris or Canis familiaris. There is still disagreement about the amount of eastern wolf versus grey wolf in its genome, and additional SNP genotyping needs to sample known eastern wolves from Algonquin Pro- vincial Park, Ontario to verify this. -
An Introduction to the Classification of Elasmobranchs
An introduction to the classification of elasmobranchs 17 Rekha J. Nair and P.U Zacharia Central Marine Fisheries Research Institute, Kochi-682 018 Introduction eyed, stomachless, deep-sea creatures that possess an upper jaw which is fused to its cranium (unlike in sharks). The term Elasmobranchs or chondrichthyans refers to the The great majority of the commercially important species of group of marine organisms with a skeleton made of cartilage. chondrichthyans are elasmobranchs. The latter are named They include sharks, skates, rays and chimaeras. These for their plated gills which communicate to the exterior by organisms are characterised by and differ from their sister 5–7 openings. In total, there are about 869+ extant species group of bony fishes in the characteristics like cartilaginous of elasmobranchs, with about 400+ of those being sharks skeleton, absence of swim bladders and presence of five and the rest skates and rays. Taxonomy is also perhaps to seven pairs of naked gill slits that are not covered by an infamously known for its constant, yet essential, revisions operculum. The chondrichthyans which are placed in Class of the relationships and identity of different organisms. Elasmobranchii are grouped into two main subdivisions Classification of elasmobranchs certainly does not evade this Holocephalii (Chimaeras or ratfishes and elephant fishes) process, and species are sometimes lumped in with other with three families and approximately 37 species inhabiting species, or renamed, or assigned to different families and deep cool waters; and the Elasmobranchii, which is a large, other taxonomic groupings. It is certain, however, that such diverse group (sharks, skates and rays) with representatives revisions will clarify our view of the taxonomy and phylogeny in all types of environments, from fresh waters to the bottom (evolutionary relationships) of elasmobranchs, leading to a of marine trenches and from polar regions to warm tropical better understanding of how these creatures evolved. -
Forage Fish Management Plan
Oregon Forage Fish Management Plan November 19, 2016 Oregon Department of Fish and Wildlife Marine Resources Program 2040 SE Marine Science Drive Newport, OR 97365 (541) 867-4741 http://www.dfw.state.or.us/MRP/ Oregon Department of Fish & Wildlife 1 Table of Contents Executive Summary ....................................................................................................................................... 4 Introduction .................................................................................................................................................. 6 Purpose and Need ..................................................................................................................................... 6 Federal action to protect Forage Fish (2016)............................................................................................ 7 The Oregon Marine Fisheries Management Plan Framework .................................................................. 7 Relationship to Other State Policies ......................................................................................................... 7 Public Process Developing this Plan .......................................................................................................... 8 How this Document is Organized .............................................................................................................. 8 A. Resource Analysis .................................................................................................................................... -
Feeding Habits of the Common Thresher Shark (Alopias Vulpinus) Sampled from the California-Based Drift Gill Net Fishery, 1998-1 999
PRETI ET AL.: FEEDING HABITS OF COMMON THRESHER SHARK CalCOFl Rep., Vol. 42, 2001 FEEDING HABITS OF THE COMMON THRESHER SHARK (ALOPIAS VULPINUS) SAMPLED FROM THE CALIFORNIA-BASED DRIFT GILL NET FISHERY, 1998-1 999 ANTONELLA PRETI SUSAN E. SMITH AND DARLENE A. RAMON California Department of Fish and Game National Marine Fisheries Service, NOM 8604 La Jolla Shores Dnve Southwest Fisheries Science Center La Jolla, California 92037 P.O. Box 271 sharksharkshark@hotniail coni La Jolla, California 92038 ABSTRACT (Compagno 1984). It is epipelagic, gregarious, and cos- The diet of common thresher shark (Alopius vulpinus) mopolitan, and in the northeastern Pacific seems to be from US. Pacific Coast waters was investigated by means most abundant within 40 miles of shore (Strasburg 1958). of frequency of occurrence, gravimetric and numerical Its known range extends from Clarion Island, Mexico, methods, and calculating the geometric index of im- north to British Columbia; it is common seasonally from portance (GII) of prey taxa taken from stoniachs col- mid-Baja California, Mexico, to Washington state.' It lected by fishery observers from the California-based is the leading commercial shark taken in California, drift gill net fishery. Sampling was done from 16 August where it is highly valued in the fresh fish trade (Holts et 1998 to 24 January 1999, a time when the California al. 1998). It is also sought by recreational anglers for its Current was undergoing rapid change from El Niiio to fighting ability as well as food value, especially in south- La Niiia conhtions. Of the 165 stomachs examined, 107 ern California. -
4 Thresher Shark, Alopias Vulpinus
4 Thresher Shark, Alopias vulpinus Thresher shark, Alopias vulpinus. Photo credit: Dale Sweetnam. History of the Fishery The common thresher shark, Alopias vulpinus, is the most common commercially landed shark in California. They are primarily caught using large mesh drift gill nets and hook and line gear, but are also caught incidentally with small mesh gill nets and harpoon. Prior to 1977, all sharks were reported in one market category and not separated by species, and it is assumed threshers were caught as bycatch in gears at levels similar or greater than today. The first significant fishery for thresher sharks began the late 1970s to early 1980s when drift gill net fishers began to target them close to the southern California coastline. The fishery expanded rapidly and, because of overfishing concerns, the California Department of Fish and Game (Department) as mandated by the State Legislature began an observer program, monitored landings and implemented a logbook program. A limited entry permit program for drift gill net gear was initiated in 1982, with permits issued to fishers rather than boats to prevent false inflation in value. The drift gill net fishery for thresher sharks peaked in 1981 when 113 Status of the Fisheries Report 2008 4-1 drift gill net boats landed nearly 600 tons (544 metric tons). However, total landings using all gears were highest the following year with a total of more than 1700 tons (1542 metric tons) taken by all gears (Figure 4-1). 2000 1500 1000 Landings (short tons) (short Landings 500 0 1977 1979 1981 1983 1985 1987 1989 1991 1993 1995 1997 1999 2001 2003 2005 2007 Year Figure 4-1. -
Updated Checklist of Marine Fishes (Chordata: Craniata) from Portugal and the Proposed Extension of the Portuguese Continental Shelf
European Journal of Taxonomy 73: 1-73 ISSN 2118-9773 http://dx.doi.org/10.5852/ejt.2014.73 www.europeanjournaloftaxonomy.eu 2014 · Carneiro M. et al. This work is licensed under a Creative Commons Attribution 3.0 License. Monograph urn:lsid:zoobank.org:pub:9A5F217D-8E7B-448A-9CAB-2CCC9CC6F857 Updated checklist of marine fishes (Chordata: Craniata) from Portugal and the proposed extension of the Portuguese continental shelf Miguel CARNEIRO1,5, Rogélia MARTINS2,6, Monica LANDI*,3,7 & Filipe O. COSTA4,8 1,2 DIV-RP (Modelling and Management Fishery Resources Division), Instituto Português do Mar e da Atmosfera, Av. Brasilia 1449-006 Lisboa, Portugal. E-mail: [email protected], [email protected] 3,4 CBMA (Centre of Molecular and Environmental Biology), Department of Biology, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal. E-mail: [email protected], [email protected] * corresponding author: [email protected] 5 urn:lsid:zoobank.org:author:90A98A50-327E-4648-9DCE-75709C7A2472 6 urn:lsid:zoobank.org:author:1EB6DE00-9E91-407C-B7C4-34F31F29FD88 7 urn:lsid:zoobank.org:author:6D3AC760-77F2-4CFA-B5C7-665CB07F4CEB 8 urn:lsid:zoobank.org:author:48E53CF3-71C8-403C-BECD-10B20B3C15B4 Abstract. The study of the Portuguese marine ichthyofauna has a long historical tradition, rooted back in the 18th Century. Here we present an annotated checklist of the marine fishes from Portuguese waters, including the area encompassed by the proposed extension of the Portuguese continental shelf and the Economic Exclusive Zone (EEZ). The list is based on historical literature records and taxon occurrence data obtained from natural history collections, together with new revisions and occurrences. -
Use of Productivity and Susceptibility Indices to Determine the Vulnerability of a Stock: with Example Applications to Six U.S
Use of productivity and susceptibility indices to determine the vulnerability of a stock: with example applications to six U.S. fisheries. Wesley S. Patrick1, Paul Spencer2, Olav Ormseth2, Jason Cope3, John Field4, Donald Kobayashi5, Todd Gedamke6, Enric Cortés7, Keith Bigelow5, William Overholtz8, Jason Link8, and Peter Lawson9. 1NOAA, National Marine Fisheries Service, Office of Sustainable Fisheries, 1315 East- West Highway, Silver Spring, MD 20910; 2 NOAA, National Marine Fisheries Service, Alaska Fisheries Science Center, 7600 Sand Point Way, Seattle, WA 98115; 3NOAA, National Marine Fisheries Service, Northwest Fisheries Science Center, 2725 Montlake Boulevard East, Seattle, WA 98112; 4NOAA, National Marine Fisheries Service, Southwest Fisheries Science Center, 110 Shaffer Road, Santa Cruz, CA 95060; 5NOAA, National Marine Fisheries Service, Pacific Islands Fisheries Science Center, 2570 Dole Street, Honolulu, HI 96822; 6NOAA, National Marine Fisheries Service, Southeast Fisheries Science Center, 75 Virginia Beach Drive, Miami, FL 33149; 7NOAA, National Marine Fisheries Service, Southeast Fisheries Science Center, 3500 Delwood Beach Road, Panama City, FL 32408; 8NOAA, National Marine Fisheries Service, Northeast Fisheries Science Center, 166 Water Street, Woods Hole, MA 02543; 9NOAA, National Marine Fisheries Service, Northwest Fisheries Science Center, 2030 South Marine Science Drive, Newport, OR 97365. CORRESPONDING AUTHOR: Wesley S. Patrick, NOAA, National Marine Fisheries Service, Office of Sustainable Fisheries, 1315 East-West -
Identification Guide to the Deep-Sea Cartilaginous Fishes Of
Identification guide to the deep–sea cartilaginous fishes of the Southeastern Atlantic Ocean FAO. 2015. Identification guide to the deep–sea cartilaginous fishes of the Southeastern Atlantic Ocean. FishFinder Programme, by Ebert, D.A. and Mostarda, E., Rome, Italy. Supervision: Merete Tandstad, Jessica Sanders (FAO, Rome) Technical editor: Edoardo Mostarda (FAO, Rome) Colour illustrations, cover and graphic design: Emanuela D’Antoni (FAO, Rome) This guide was prepared under the “FAO Deep–sea Fisheries Programme” thanks to a generous funding from the Government of Norway (Support to the implementation of the International Guidelines on the Management of Deep-Sea Fisheries in the High Seas project) for the purpose of assisting states, institutions, the fishing industry and RFMO/As in the implementation of FAO International Guidelines for the Management of Deep-sea Fisheries in the High Seas. It was developed in close collaboration with the FishFinder Programme of the Marine and Inland Fisheries Branch, Fisheries Department, Food and Agriculture Organization of the United Nations (FAO). The present guide covers the deep–sea Southeastern Atlantic Ocean and that portion of Southwestern Indian Ocean from 18°42’E to 30°00’E (FAO Fishing Area 47). It includes a selection of cartilaginous fish species of major, moderate and minor importance to fisheries as well as those of doubtful or potential use to fisheries. It also covers those little known species that may be of research, educational, and ecological importance. In this region, the deep–sea chondrichthyan fauna is currently represented by 50 shark, 20 batoid and 8 chimaera species. This guide includes full species accounts for 37 shark, 9 batoid and 4 chimaera species selected as being the more difficult to identify and/or commonly caught. -
Coleoptera, Curculionidae: Scolytinae)
Zootaxa 4722 (6): 540–554 ISSN 1175-5326 (print edition) https://www.mapress.com/j/zt/ Article ZOOTAXA Copyright © 2020 Magnolia Press ISSN 1175-5334 (online edition) https://doi.org/10.11646/zootaxa.4722.6.2 http://zoobank.org/urn:lsid:zoobank.org:pub:4ADBCE90-97D2-4A34-BCDC-5E207D8EDF0D Two new genera of Oriental xyleborine ambrosia beetles (Coleoptera, Curculionidae: Scolytinae) ANTHONY I. COGNATO1,3, SARAH M. SMITH1 & ROGER A. BEAVER2 1Michigan State University, Department of Entomology, 288 Farm Lane, room 243, East Lansing, MI 48824, USA. 2161/2 Mu 5, Soi Wat Pranon, T. Donkaew, A. Maerim, Chiangmai 50180, Thailand. 3Corresponding author. E-mail: [email protected] Abstract As part of an ongoing revision of the Southeast Asian fauna two distinct species groups were identified and hypothesized as new genera. These species groups were monophyletic as evidenced by a Bayesian analysis of DNA sequences from four genes for 181 xyleborine taxa augmented by 18 species newly included in this phylogenetic analysis. The species groups and newly discovered species demonstrated unique combinations of diagnostic characters and levels of DNA sequence difference commensurable to other xyleborine taxa. Hence, two new genera and three new species were described: Fraudatrix gen. n., Tricosa gen. n., Tricosa cattienensis sp. n., T. indochinensis sp. n., T. jacula sp. n.. The following new combinations are proposed: Fraudatrix cuneiformis (Schedl, 1958) (Xyleborus) comb. n., Fraudatrix melas (Eggers, 1927) comb. n., F. pileatula (Schedl, 1975) (Xyleborus) comb. n., F. simplex (Browne, 1949), (Cryptoxyleborus) comb. n., Tricosa mangoensis (Schedl, 1942) (Xyleborus) comb. n., T. metacuneola (Eggers, 1940) (Xyleborus) comb. n. -
Homo Sapien Cognatus
Research on a Reported Sasquatch (Homo sapien cognatus) gene HAR1 By: Ella Archer And Evan Hauser and Lon Knappenberger Westfield Academy and Central School, 203 East Main Street, Westfield, New York, 14787 and The Western New York Genetics in Research Partnership Abstract Methods In 2013, The Sasquatch Genome project, which includes Websites that were used: Dr. Melba Ketcham and her colleagues, published a paper in 1) Sasquatch genome Project-Supplmental raw data . the Journal DeNova: Accelerating Science in which they http://sasquatchgenomeproject.org/sasquatch_genom HAR1 Sequence compared to USP9X in What if you add in another carnivore like a cat? claimed they had sequenced genes from a creature unknown e_project_003.htm to obtain sequences for testing. other primates to science, which they named Homo sapiens cognatus. The 2) EXPASY http://web.expasy.org/translate/ to obtain 6 purpose of this project was to use the newly acquired skills of possible reading frame translation for sequences. gene-act.org to test the claims of this article. A supplemental 3) BLAST https://blast.ncbi.nlm.nih.gov/Blast.cgi sequence titled _HAR1 from 4) UNIPROT: http://www.uniprot.org/ to find comparable www.sasquatchgenomeproject.org was aligned using BLAST primate, domesticated and North American mammals and the multiple sequence alignments and phylogenetic trees sequences. were constructed comparing the sequence to other primates, 5) T-COFFEE http://www.ebi.ac.uk/Tools/msa/tcoffee/ to Figure 4: Phylogenetic tree from T-COFFEE of HAR_1 from domesticated mammals and North American mammals to construct multiple sequence alignments and primates. The sasquatch is on the same branch as the macaque, determine the source of the sequence. -
Thresher Sharks (Alopias Spp.) in Subareas 10 and 12, Divisions 7.C–K and 8.D–E, and in Subdivisions 5.B.1, 9.B.1, and 14.B.1 (Northeast Atlantic)
ICES Advice on fishing opportunities, catch, and effort Oceanic Northeast Atlantic ecoregion Published 4 October 2019 Thresher sharks (Alopias spp.) in subareas 10 and 12, divisions 7.c–k and 8.d–e, and in subdivisions 5.b.1, 9.b.1, and 14.b.1 (Northeast Atlantic) ICES advice on fishing opportunities ICES advises that when the precautionary approach is applied, there should be zero catch in each of the years 2020–2023. Stock development over time No information is available to inform on the current stock status of either common thresher shark (Alopias vulpinus) or bigeye thresher shark (A. superciliosus). Landings data for the entire stock area are uncertain for both species. Stock and exploitation status ICES cannot assess the stock and exploitation status relative to maximum sustainable yield (MSY) and precautionary approach (PA) reference points, because the reference points are undefined. Thresher sharks (Alopias spp.) in the Northeast Atlantic. State of the stocks and fishery relative to reference points. Table 1 Catch scenarios The ICES framework for category 6 stocks (ICES, 2012) was applied. For stocks without information on abundance or exploitation, ICES considers that a precautionary reduction of catches should be implemented unless there is ancillary information clearly indicating that the current level of exploitation is appropriate for the stock. Discarding is known to take place, but ICES cannot quantify the corresponding catch. Discard survival, which may occur, has also not been fully estimated. Table 2 Thresher sharks (Alopias spp.) in the Northeast Atlantic. Basis for the catch scenario. Recent advised catch 0 Discard rate Unknown Precautionary buffer Not applied - Catch advice 0 % Advice change * 0% * Advice value for 2020–2023 relative to the advice for 2016–2019 issued in 2015. -
Atlantic Sharks at Risk
RESEARCH SERIES JUNE 2008 Risk Assessment Prompts No-Take Recommendations for Shark Species ATLANTIC SHARKS AT RISK SummARY OF AN EXPERT WORKING GROup REPORT: Simpfendorfer, C., Heupel M., Babcock, E., Baum, J.K., Dudley, S.F.J., Stevens, J.D., Fordham, S., and A. Soldo. 2008. Management Recommendations Based on Integrated Risk Assessment of Data-Poor Pelagic Atlantic Sharks. POpuLATIONS OF MANY of the world’s pelagic, or open ocean, shark and ray species are declining. Like most sharks, these species are known to be susceptible to overfishing due to low reproductive rates. Pelagic longline fisheries for tuna and swordfish catch significant numbers of pelagic sharks and rays and shark fisheries are also growing due to declines in traditional target species and the rising value of shark fins and meat. Yet, a lack of data has prevented scientists from conducting reliable population assessments for most pelagic shark and ray species, hindering effective management actions. Dr. Colin Simpfendorfer and the Lenfest Ocean Program convened an international expert working group to estimate the risk of overfishing for twelve species caught in Atlantic pelagic longline fisheries under the jurisdiction of the International Commission for the Conserva- tion of Atlantic Tunas (ICCAT). The scientists conducted an integrated risk assessment designed for data-poor situations for these sharks and rays. Their analysis indicated that bigeye thresher, shortfin mako and longfin mako sharks had the highest risk of overfishing while many of the other species had at least moderately high levels of risk. Based on these results, the scientists developed recommendations for limiting or prohibiting catch for the main pelagic shark and ray species taken in ICCAT fisheries.