The Amyloid-β Pathway in Alzheimer’S Disease
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Prion Fragment Peptides Are Digested with Membrane Type Matrix Metalloproteinases and Acquire Enzyme Resistance Through Cu2+-Binding
Biomolecules 2014, 4, 510-526; doi:10.3390/biom4020510 OPEN ACCESS biomolecules ISSN 2218-273X www.mdpi.com/journal/biomolecules/ Article Prion Fragment Peptides Are Digested with Membrane Type Matrix Metalloproteinases and Acquire Enzyme Resistance through Cu2+-Binding Aya Kojima 1,2, Motomi Konishi 1 and Toshifumi Akizawa 1,* 1 Analytical Chemistry, Pharmaceutical Science, Setsunan University, 45-1 Nagaotoge-cho, Hirakata, Osaka 573-0101, Japan; E-Mails: [email protected] (A.K.); [email protected] (M.K.) 2 Division of Cellular and Molecular Biology, Department of Cancer Biology, Institute of Medical Science, The University of Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo 180-8639, Japan * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel./Fax: +81-72-866-3129. Received: 31 January 2014; in revised form: 2 April 2014 / Accepted: 11 April 2014 / Published: 8 May 2014 Abstract: Prions are the cause of neurodegenerative disease in humans and other mammals. The structural conversion of the prion protein (PrP) from a normal cellular protein (PrPC) to a protease-resistant isoform (PrPSc) is thought to relate to Cu2+ binding to histidine residues. In this study, we focused on the membrane-type matrix metalloproteinases (MT-MMPs) such as MT1-MMP and MT3-MMP, which are expressed in the brain as PrPC-degrading proteases. We synthesized 21 prion fragment peptides. Each purified peptide was individually incubated with recombinant MT1-MMP or MT3-MMP in the presence or absence of Cu2+ and the cleavage sites determined by LC-ESI-MS analysis. Recombinant MMP-7 and human serum (HS) were also tested as control. -
ADAM10 Site-Dependent Biology: Keeping Control of a Pervasive Protease
International Journal of Molecular Sciences Review ADAM10 Site-Dependent Biology: Keeping Control of a Pervasive Protease Francesca Tosetti 1,* , Massimo Alessio 2, Alessandro Poggi 1,† and Maria Raffaella Zocchi 3,† 1 Molecular Oncology and Angiogenesis Unit, IRCCS Ospedale Policlinico S. Martino Largo R. Benzi 10, 16132 Genoa, Italy; [email protected] 2 Proteome Biochemistry, IRCCS San Raffaele Scientific Institute, 20132 Milan, Italy; [email protected] 3 Division of Immunology, Transplants and Infectious Diseases, IRCCS San Raffaele Scientific Institute, 20132 Milan, Italy; [email protected] * Correspondence: [email protected] † These authors contributed equally to this work as last author. Abstract: Enzymes, once considered static molecular machines acting in defined spatial patterns and sites of action, move to different intra- and extracellular locations, changing their function. This topological regulation revealed a close cross-talk between proteases and signaling events involving post-translational modifications, membrane tyrosine kinase receptors and G-protein coupled recep- tors, motor proteins shuttling cargos in intracellular vesicles, and small-molecule messengers. Here, we highlight recent advances in our knowledge of regulation and function of A Disintegrin And Metalloproteinase (ADAM) endopeptidases at specific subcellular sites, or in multimolecular com- plexes, with a special focus on ADAM10, and tumor necrosis factor-α convertase (TACE/ADAM17), since these two enzymes belong to the same family, share selected substrates and bioactivity. We will discuss some examples of ADAM10 activity modulated by changing partners and subcellular compartmentalization, with the underlying hypothesis that restraining protease activity by spatial Citation: Tosetti, F.; Alessio, M.; segregation is a complex and powerful regulatory tool. -
Characterisation of Aspergillus Niger Prolyl Aminopeptidase
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Wageningen University & Research Publications Mol Gen Genomics (2005) 272: 673–679 DOI 10.1007/s00438-004-1094-5 ORIGINAL PAPER Danie¨lle E. J. W. Basten Æ Antoine P. H. A. Moers Albert J. J. van. Ooyen Æ Peter J. Schaap Characterisation of Aspergillus niger prolyl aminopeptidase Received: 29 April 2004 / Accepted: 16 November 2004 / Published online: 15 January 2005 Ó Springer-Verlag 2005 Abstract We have cloned a gene (papA) that encodes a ases and tripeptidases and finally by carboxypeptidases prolyl aminopeptidase from Aspergillus niger. Homolo- and aminopeptidases. The turnover of proteins by pro- gous genes are present in the genomes of the Eurotiales teases provides a ready pool of amino acids as precur- A. nidulans, A. fumigatus and Talaromyces emersonii, sors for the synthesis of new proteins (Bennet and Klich but the gene is not present in the genome of the yeast 1992). Saccharomyces cerevisiae. Cell extracts of strains over- Proteases normally do not hydrolyse bonds adjacent expressing the gene under the control of its own pro- to proline residues. Instead a specialised group of en- moter showed a fourfold to sixfold increase in prolyl zymes has evolved that hydrolyses these bonds. Their aminopeptidase activity, but no change in phenylalanine activity depends on both the isomeric state of the proline or leucine aminopeptidase activity. The overexpressed residue and its position in the peptide chain (Vanhoof enzyme was subsequently purified and characterised. et al. 1995; Cunningham and O’Connor 1997). Proline The enzyme specifically removes N-terminal proline and aminopeptidases (Pap, prolyl iminopeptidase, EC hydroxyproline residues from peptides. -
Methionine Aminopeptidase Emerging Role in Angiogenesis
Chapter 2 Methionine Aminopeptidase Emerging role in angiogenesis Joseph A. Vetro1, Benjamin Dummitt2, and Yie-Hwa Chang2 1Department of Pharmaceutical Chemistry, University of Kansas, 2095 Constant Ave., Lawrence, KS 66047, USA. 2Edward A. Doisy Department of Biochemistry and Molecular Biology, St. Louis University Health Sciences Center, 1402 S. Grand Blvd., St. Louis, MO 63104, USA. Abstract: Angiogenesis, the formation of new blood vessels from existing vasculature, is a key factor in a number of vascular-related pathologies such as the metastasis and growth of solid tumors. Thus, the inhibition of angiogenesis has great potential as a therapeutic modality in the treatment of cancer and other vascular-related diseases. Recent evidence suggests that the inhibition of mammalian methionine aminopeptidase type 2 (MetAP2) catalytic activity in vascular endothelial cells plays an essential role in the pharmacological activity of the most potent small molecule angiogenesis inhibitors discovered to date, the fumagillin class. Methionine aminopeptidase (MetAP, EC 3.4.11.18) catalyzes the non-processive, co-translational hydrolysis of initiator N-terminal methionine when the second residue of the nascent polypeptide is small and uncharged. Initiator Met removal is a ubiquitous and essential modification. Indirect evidence suggests that removal of initiator Met by MetAP is important for the normal function of many proteins involved in DNA repair, signal transduction, cell transformation, secretory vesicle trafficking, and viral capsid assembly and infection. Currently, much effort is focused on understanding the essential nature of methionine aminopeptidase activity and elucidating the role of methionine aminopeptidase type 2 catalytic activity in angiogenesis. In this chapter, we give an overview of the MetAP proteins, outline the importance of initiator Met hydrolysis, and discuss the possible mechanism(s) through which MetAP2 inhibition by the fumagillin class of angiogenesis inhibitors leads to cytostatic growth arrest in vascular endothelial cells. -
Changes in Proteolysis in Fermented Milk Produced by Streptococcus Thermophilus in Co-Culture with Lactobacillus Plantarum Or Bifidobacterium Animalis Subsp
molecules Article Changes in Proteolysis in Fermented Milk Produced by Streptococcus thermophilus in Co-Culture with Lactobacillus plantarum or Bifidobacterium animalis subsp. lactis During Refrigerated Storage Sining Li 1,2 , Shanhu Tang 1,*, Qiang He 2,*, Jiangxiao Hu 1 and Jing Zheng 1 1 College of Life Science and Technology, Southwest Minzu University, Chengdu 610041, China; [email protected] (S.L.); [email protected] (J.H.); [email protected] (J.Z.) 2 College of Biomass Science and Engineering, Sichuan University, Chengdu 610065, China * Correspondence: [email protected] (S.T.); [email protected] (Q.H.); Tel.: +86-28-85528876 (S.T.); +86-28-85468323 (Q.H.) Received: 1 September 2019; Accepted: 13 October 2019; Published: 15 October 2019 Abstract: Proteolysis in fermented milk, a complex and dynamic process, depends on the starter cultures used. This study aimed to evaluate the influence of Lactobacillus plantarum or Bifidobacterium animalis subsp. lactis, or both, co-fermented with Streptococcus thermophilus, on the changes in the proteolysis profile of fermented milk during 21-day storage at 4 ◦C, including the pH value, proteolytic degree, protease activity, aminopeptidase activity, free amino acid content, and electrophoresis performance. The results showed that the treatments with co-cultures exhibited a higher amount of free amino groups and neutral protease activity at an extracellular level, whereas lower pH values and aminopeptidase activities towards the six substrates at an intracellular level than the ones with a single-strain of S. thermophilus over the refrigerated storage were observed. In co-fermentation with S. thermophilus, B. animalis subsp. lactis did not significantly affect the concentrations of most free amino acids, while contributions of L. -
Amidoligases with ATP-Grasp, Glutamine Synthetase-Like and Acetyltransferase-Like Domains: Synthesis of Novel Metabolites and Peptide Modifications of Proteinswz
View Article Online / Journal Homepage / Table of Contents for this issue Molecular BioSystems This article was published as part of the Computational and Systems Biology themed issue Please take a look at the full table of contents to access the other papers in this issue. Open Access Article. Published on 13 October 2009. Downloaded 9/27/2021 9:23:51 AM. View Article Online PAPER www.rsc.org/molecularbiosystems | Molecular BioSystems Amidoligases with ATP-grasp, glutamine synthetase-like and acetyltransferase-like domains: synthesis of novel metabolites and peptide modifications of proteinswz Lakshminarayan M. Iyer,a Saraswathi Abhiman,a A. Maxwell Burroughsb and L. Aravind*a Received 28th August 2009, Accepted 28th August 2009 First published as an Advance Article on the web 13th October 2009 DOI: 10.1039/b917682a Recent studies have shown that the ubiquitin system had its origins in ancient cofactor/amino acid biosynthesis pathways. Preliminary studies also indicated that conjugation systems for other peptide tags on proteins, such as pupylation, have evolutionary links to cofactor/amino acid biosynthesis pathways. Following up on these observations, we systematically investigated the non-ribosomal amidoligases of the ATP-grasp, glutamine synthetase-like and acetyltransferase folds by classifying the known members and identifying novel versions. We then established their contextual connections using information from domain architectures and conserved gene neighborhoods. This showed remarkable, previously uncharacterized functional links between diverse peptide ligases, several peptidases of unrelated folds and enzymes involved in synthesis of modified amino acids. Using the network of contextual connections we were able to predict numerous novel pathways for peptide synthesis and modification, amine-utilization, secondary metabolite synthesis and potential peptide-tagging systems. -
Α-Secretase Nonsense Mutation (ADAM10 Tyr167*) in Familial
Agüero et al. Alzheimer's Research & Therapy (2020) 12:139 https://doi.org/10.1186/s13195-020-00708-0 RESEARCH Open Access α-Secretase nonsense mutation (ADAM10 Tyr167*) in familial Alzheimer’s disease Pablo Agüero1, María José Sainz1, María-Salud García-Ayllón2,3,4, Javier Sáez-Valero2,3, Raquel Téllez5, Rosa Guerrero-López6, Julián Pérez-Pérez7, Adriano Jiménez-Escrig8 and Estrella Gómez-Tortosa1* Abstract Background: The disintegrin metalloproteinase 10 (ADAM10) is the main α-secretase acting in the non- amyloidogenic processing of APP. Some ADAM10 gene variants have been associated with higher susceptibility to develop late-onset AD, though clear clinical-genetic correlates remain elusive. Methods: Clinical-genetic and biomarker study of a first family with early- and late-onset AD associated with a nonsense ADAM10 mutation (p.Tyr167*). CSF analysis included AD core biomarkers, as well as Western blot of ADAM10 species and sAPPα and sAPPβ peptides. We evaluate variant’s pathogenicity, pattern of segregation, and further screened for the p.Tyr167* mutation in 197 familial AD cases from the same cohort, 200 controls from the same background, and 274 AD cases from an independent Spanish cohort. Results: The mutation was absent from public databases and segregated with the disease. CSF Aβ42, total tau, and phosphorylated tau of affected siblings were consistent with AD. The predicted haploinsufficiency effect of the nonsense mutation was supported by (a) ADAM10 isoforms in CSF decreased around 50% and (b) 70% reduction of CSF sAPPα peptide, both compared to controls, while sAPPβ levels remained unchanged. Interestingly, sporadic AD cases had a similar decrease in CSF ADAM10 levels to that of mutants, though their sAPPα and sAPPβ levels resembled those of controls. -
The Disintegrin/Metalloproteinase ADAM10 Is Essential for the Establishment of the Brain Cortex
The Journal of Neuroscience, April 7, 2010 • 30(14):4833–4844 • 4833 Development/Plasticity/Repair The Disintegrin/Metalloproteinase ADAM10 Is Essential for the Establishment of the Brain Cortex Ellen Jorissen,1,2* Johannes Prox,3* Christian Bernreuther,4 Silvio Weber,3 Ralf Schwanbeck,3 Lutgarde Serneels,1,2 An Snellinx,1,2 Katleen Craessaerts,1,2 Amantha Thathiah,1,2 Ina Tesseur,1,2 Udo Bartsch,5 Gisela Weskamp,6 Carl P. Blobel,6 Markus Glatzel,4 Bart De Strooper,1,2 and Paul Saftig3 1Center for Human Genetics, Katholieke Universiteit Leuven and 2Department for Developmental and Molecular Genetics, Vlaams Instituut voor Biotechnologie (VIB), 3000 Leuven, Belgium, 3Institut fu¨r Biochemie, Christian-Albrechts-Universita¨t zu Kiel, D-24098 Kiel, Germany, 4Institute of Neuropathology, University Medical Center Hamburg Eppendorf, 20246 Hamburg, Germany, 5Department of Ophthalmology, University Medical Center Hamburg Eppendorf, 20246 Hamburg, Germany, and 6Arthritis and Tissue Degeneration Program, Hospital for Special Surgery, and Departments of Medicine and of Physiology, Systems Biology and Biophysics, Weill Medical College of Cornell University, New York, New York 10021 The metalloproteinase and major amyloid precursor protein (APP) ␣-secretase candidate ADAM10 is responsible for the shedding of ,proteins important for brain development, such as cadherins, ephrins, and Notch receptors. Adam10 ؊/؊ mice die at embryonic day 9.5 due to major defects in development of somites and vasculogenesis. To investigate the function of ADAM10 in brain, we generated Adam10conditionalknock-out(cKO)miceusingaNestin-Crepromotor,limitingADAM10inactivationtoneuralprogenitorcells(NPCs) and NPC-derived neurons and glial cells. The cKO mice die perinatally with a disrupted neocortex and a severely reduced ganglionic eminence, due to precocious neuronal differentiation resulting in an early depletion of progenitor cells. -
Table S3. Bootstrapped Frequency of COG Occurrences for Specific Metabolic Processes Encoded in the Antarctic Bacterioplankton Environmental Genomes
Table S3. Bootstrapped frequency of COG occurrences for specific metabolic processes encoded in the Antarctic bacterioplankton environmental genomes. Category COG Predicted Protein WEG SEG Inorganic carbon COG1850 Ribulose 1,5-bisphosphate carboxylase, large subunit 4.34 0.85 COG4451 Ribulose bisphosphate carboxylase small subunit 1.19 0.83 COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase 13.7 6.63 COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit 7.91 4.85 Sulfur Metabolism (inorganic) COG2897 Rhodanese-related sulfurtransferase 5.64 3.25 COG0607 Rhodanese-related sulfurtransferase 6.02 5.68 COG2895 GTPases - Sulfate adenylate transferase subunit 1 2.28 4.88 COG1054 Predicted sulfurtransferase 2.53 4.17 COG0306 Phosphate/sulphate permeases 7.56 3.27 COG0659 Sulfate permease and related transporters (MFS superfamily) 15.72 15.22 COG0529 Adenylylsulfate kinase and related kinases 1.98 4.16 COG0225 Peptide methionine sulfoxide reductase 7.03 3.22 COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase 3.77 2.47 COG0641 Arylsulfatase regulator (Fe-S oxidoreductase) 0.67 0 COG0526 Thiol-disulfide isomerase and thioredoxins 6.99 4.12 COG1651 Protein-disulfide isomerase 10.75 1.65 COG2041 Sulfite oxidase and related enzymes 5.51 3.05 COG2046 ATP sulfurylase (sulfate adenylyltransferase) 4.34 3.46 COG2221 Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits 1.21 0 COG2920 Dissimilatory sulfite reductase (desulfoviridin), gamma subunit 1.9 0 COG0155 Sulfite reductase, -
Strategies to Target ADAM17 in Disease: from Its Discovery to the Irhom Revolution
molecules Review Strategies to Target ADAM17 in Disease: From Its Discovery to the iRhom Revolution Matteo Calligaris 1,2,†, Doretta Cuffaro 2,†, Simone Bonelli 1, Donatella Pia Spanò 3, Armando Rossello 2, Elisa Nuti 2,* and Simone Dario Scilabra 1,* 1 Proteomics Group of Fondazione Ri.MED, Research Department IRCCS ISMETT (Istituto Mediterraneo per i Trapianti e Terapie ad Alta Specializzazione), Via E. Tricomi 5, 90145 Palermo, Italy; [email protected] (M.C.); [email protected] (S.B.) 2 Department of Pharmacy, University of Pisa, Via Bonanno 6, 56126 Pisa, Italy; [email protected] (D.C.); [email protected] (A.R.) 3 Università degli Studi di Palermo, STEBICEF (Dipartimento di Scienze e Tecnologie Biologiche Chimiche e Farmaceutiche), Viale delle Scienze Ed. 16, 90128 Palermo, Italy; [email protected] * Correspondence: [email protected] (E.N.); [email protected] (S.D.S.) † These authors contributed equally to this work. Abstract: For decades, disintegrin and metalloproteinase 17 (ADAM17) has been the object of deep investigation. Since its discovery as the tumor necrosis factor convertase, it has been considered a major drug target, especially in the context of inflammatory diseases and cancer. Nevertheless, the development of drugs targeting ADAM17 has been harder than expected. This has generally been due to its multifunctionality, with over 80 different transmembrane proteins other than tumor necrosis factor α (TNF) being released by ADAM17, and its structural similarity to other metalloproteinases. This review provides an overview of the different roles of ADAM17 in disease and the effects of its ablation in a number of in vivo models of pathological conditions. -
Proteolytic Cleavage—Mechanisms, Function
Review Cite This: Chem. Rev. 2018, 118, 1137−1168 pubs.acs.org/CR Proteolytic CleavageMechanisms, Function, and “Omic” Approaches for a Near-Ubiquitous Posttranslational Modification Theo Klein,†,⊥ Ulrich Eckhard,†,§ Antoine Dufour,†,¶ Nestor Solis,† and Christopher M. Overall*,†,‡ † ‡ Life Sciences Institute, Department of Oral Biological and Medical Sciences, and Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada ABSTRACT: Proteases enzymatically hydrolyze peptide bonds in substrate proteins, resulting in a widespread, irreversible posttranslational modification of the protein’s structure and biological function. Often regarded as a mere degradative mechanism in destruction of proteins or turnover in maintaining physiological homeostasis, recent research in the field of degradomics has led to the recognition of two main yet unexpected concepts. First, that targeted, limited proteolytic cleavage events by a wide repertoire of proteases are pivotal regulators of most, if not all, physiological and pathological processes. Second, an unexpected in vivo abundance of stable cleaved proteins revealed pervasive, functionally relevant protein processing in normal and diseased tissuefrom 40 to 70% of proteins also occur in vivo as distinct stable proteoforms with undocumented N- or C- termini, meaning these proteoforms are stable functional cleavage products, most with unknown functional implications. In this Review, we discuss the structural biology aspects and mechanisms -
Beta-Secretase Transgenic Mice
BETA-SECRETASE TRANSGENIC MICE: EFFECTS OF BACE1 AND BACE2 ON ALZHEIMER’S DISEASE PATHOGENESIS by MATTHEW J. CHIOCCO Submitted in partial fulfillment of the requirements For the degree of Doctor of Philosophy Dissertation Advisor: Dr. Bruce T. Lamb Department of Genetics CASE WESTERN RESERVE UNIVERSITY May, 2005 CASE WESTERN RESERVE UNIVERSITY SCHOOL OF GRADUATE STUDIES We hereby approve the dissertation of ______________________________________________________ candidate for the Ph.D. degree *. (signed)_______________________________________________ (chair of the committee) ________________________________________________ ________________________________________________ ________________________________________________ ________________________________________________ ________________________________________________ (date) _______________________ *We also certify that written approval has been obtained for any proprietary material contained therein. Table of Contents Chapter 1: Introduction and Research Aims .............................................................10 Clinical Presentation of AD.......................................................................................10 AD Epidemiology......................................................................................................16 APP Processing and AD Genetics..............................................................................22 Amyloid Cascade Hypothesis ....................................................................................27 APP Secretases..........................................................................................................32