Hamiltonian Cycle and Related Problems: Vertex-Breaking, Grid
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Applications of the Quantum Algorithm for St-Connectivity
Applications of the quantum algorithm for st-connectivity KAI DELORENZO1 , SHELBY KIMMEL1 , AND R. TEAL WITTER1 1Middlebury College, Computer Science Department, Middlebury, VT Abstract We present quantum algorithms for various problems related to graph connectivity. We give simple and query-optimal algorithms for cycle detection and odd-length cycle detection (bipartiteness) using a reduction to st-connectivity. Furthermore, we show that our algorithm for cycle detection has improved performance under the promise of large circuit rank or a small number of edges. We also provide algo- rithms for detecting even-length cycles and for estimating the circuit rank of a graph. All of our algorithms have logarithmic space complexity. 1 Introduction Quantum query algorithms are remarkably described by span programs [15, 16], a linear algebraic object originally created to study classical logspace complexity [12]. However, finding optimal span program algorithms can be challenging; while they can be obtained using a semidefinite program, the size of the program grows exponentially with the size of the input to the algorithm. Moreover, span programs are designed to characterize the query complexity of an algorithm, while in practice we also care about the time and space complexity. One of the nicest span programs is for the problem of undirected st-connectivity, in which one must decide whether two vertices s and t are connected in a given graph. It is “nice” for several reasons: It is easy to describe and understand why it is correct. • It corresponds to a quantum algorithm that uses logarithmic (in the number of vertices and edges of • the graph) space [4, 11]. -
The Normalized Laplacian Spectrum of Subdivisions of a Graph
The normalized Laplacian spectrum of subdivisions of a graph Pinchen Xiea,b, Zhongzhi Zhanga,c, Francesc Comellasd aShanghai Key Laboratory of Intelligent Information Processing, Fudan University, Shanghai 200433, China bDepartment of Physics, Fudan University, Shanghai 200433, China cSchool of Computer Science, Fudan University, Shanghai 200433, China dDepartment of Applied Mathematics IV, Universitat Polit`ecnica de Catalunya, 08034 Barcelona Catalonia, Spain Abstract Determining and analyzing the spectra of graphs is an important and excit- ing research topic in mathematics science and theoretical computer science. The eigenvalues of the normalized Laplacian of a graph provide information on its structural properties and also on some relevant dynamical aspects, in particular those related to random walks. In this paper, we give the spec- tra of the normalized Laplacian of iterated subdivisions of simple connected graphs. As an example of application of these results we find the exact val- ues of their multiplicative degree-Kirchhoff index, Kemeny's constant and number of spanning trees. Keywords: Normalized Laplacian spectrum, Subdivision graph, Degree-Kirchhoff index, Kemeny's constant, Spanning trees 1. Introduction Spectral analysis of graphs has been the subject of considerable research effort in mathematics and computer science [1, 2, 3], due to its wide appli- cations in this area and in general [4, 5]. In the last few decades a large body of scientific literature has established that important structural and dynamical properties -
Matroidal Structure of Rough Sets from the Viewpoint of Graph Theory
Hindawi Publishing Corporation Journal of Applied Mathematics Volume 2012, Article ID 973920, 27 pages doi:10.1155/2012/973920 Research Article Matroidal Structure of Rough Sets from the Viewpoint of Graph Theory Jianguo Tang,1, 2 Kun She,1 and William Zhu3 1 School of Computer Science and Engineering, University of Electronic Science and Technology of China, Chengdu 611731, China 2 School of Computer Science and Engineering, XinJiang University of Finance and Economics, Urumqi 830012, China 3 Lab of Granular Computing, Zhangzhou Normal University, Zhangzhou 363000, China Correspondence should be addressed to William Zhu, [email protected] Received 4 February 2012; Revised 30 April 2012; Accepted 18 May 2012 Academic Editor: Mehmet Sezer Copyright q 2012 Jianguo Tang et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Constructing structures with other mathematical theories is an important research field of rough sets. As one mathematical theory on sets, matroids possess a sophisticated structure. This paper builds a bridge between rough sets and matroids and establishes the matroidal structure of rough sets. In order to understand intuitively the relationships between these two theories, we study this problem from the viewpoint of graph theory. Therefore, any partition of the universe can be represented by a family of complete graphs or cycles. Then two different kinds of matroids are constructed and some matroidal characteristics of them are discussed, respectively. The lower and the upper approximations are formulated with these matroidal characteristics. -
Permutation of Elements in Double Semigroups
PERMUTATION OF ELEMENTS IN DOUBLE SEMIGROUPS MURRAY BREMNER AND SARA MADARIAGA Abstract. Double semigroups have two associative operations ◦, • related by the interchange relation: (a • b) ◦ (c • d) ≡ (a ◦ c) • (b ◦ d). Kock [13] (2007) discovered a commutativity property in degree 16 for double semigroups: as- sociativity and the interchange relation combine to produce permutations of elements. We show that such properties can be expressed in terms of cycles in directed graphs with edges labelled by permutations. We use computer alge- bra to show that 9 is the lowest degree for which commutativity occurs, and we give self-contained proofs of the commutativity properties in degree 9. 1. Introduction Definition 1.1. A double semigroup is a set S with two associative binary operations •, ◦ satisfying the interchange relation for all a,b,c,d ∈ S: (⊞) (a • b) ◦ (c • d) ≡ (a ◦ c) • (b ◦ d). The symbol ≡ indicates that the equation holds for all values of the variables. We interpret ◦ and • as horizontal and vertical compositions, so that (⊞) ex- presses the equivalence of two decompositions of a square array: a b a b a b (a ◦ b) • (c ◦ d) ≡ ≡ ≡ ≡ (a • c) ◦ (b • d). c d c d c d This interpretation of the operations extends to any double semigroup monomial, producing what we call the geometric realization of the monomial. The interchange relation originated in homotopy theory and higher categories; see Mac Lane [15, (2.3)] and [16, §XII.3]. It is also called the Godement relation by arXiv:1405.2889v2 [math.RA] 26 Mar 2015 some authors; see Simpson [21, §2.1]. -
G-Parking Functions and Tree Inversions
G-PARKING FUNCTIONS AND TREE INVERSIONS DAVID PERKINSON, QIAOYU YANG, AND KUAI YU Abstract. A depth-first search version of Dhar’s burning algorithm is used to give a bijection between the parking functions of a graph and labeled spanning trees, relating the degree of the parking function with the number of inversions of the spanning tree. Specializing to the complete graph solves a problem posed by R. Stanley. 1. Introduction Let G = (V, E) be a connected simple graph with vertex set V = {0,...,n} and edge set E. Fix a root vertex r ∈ V and let SPT(G) denote the set of spanning trees of G rooted at r. We think of each element of SPT(G) as a directed graph in which all paths lead away from the root. If i, j ∈ V and i lies on the unique path from r to j in the rooted spanning tree T , then i is an ancestor of j and j is a descendant of i in T . If, in addition, there are no vertices between i and j on the path from the root, then i is the parent of its child j, and (i, j) is a directed edge of T . Definition 1. An inversion of T ∈ SPT(G) is a pair of vertices (i, j), such that i is an ancestor of j in T and i > j. It is a κ-inversion if, in addition, i is not the root and i’s parent is adjacent to j in G. The number of κ-inversions of T is the tree’s κ-number, denoted κ(G, T ). -
The Normalized Laplacian Spectrum of Subdivisions of a Graph
The normalized Laplacian spectrum of subdivisions of a graph Pinchen Xiea,c, Zhongzhi Zhangb,c, Francesc Comellasd aDepartment of Physics, Fudan University, Shanghai 200433, China bSchool of Computer Science, Fudan University, Shanghai 200433, China cShanghai Key Laboratory of Intelligent Information Processing, Fudan University, Shanghai 200433, China dDepartment of Applied Mathematics IV, Universitat Polit`ecnica de Catalunya, 08034 Barcelona Catalonia, Spain Abstract Determining and analyzing the spectra of graphs is an important and exciting research topic in theoretical computer science. The eigenvalues of the normalized Laplacian of a graph provide information on its structural properties and also on some relevant dynamical aspects, in particular those related to random walks. In this paper, we give the spectra of the nor- malized Laplacian of iterated subdivisions of simple connected graphs. As an example of application of these results we find the exact values of their multiplicative degree-Kirchhoff index, Kemeny’s constant and number of spanning trees. Keywords: Normalized Laplacian spectrum, Subdivision graph, Degree-Kirchhoff index, Kemeny’s constant, Spanning trees 1. Introduction arXiv:1510.02394v1 [math.CO] 7 Oct 2015 Spectral analysis of graphs has been the subject of considerable research effort in theoretical computer science [1, 2, 3], due to its wide applications in this area and in general [4, 5]. In the last few decades a large body of scientific literature has established that important structural and dynamical properties -
Classes of Graphs Embeddable in Order-Dependent Surfaces
Classes of graphs embeddable in order-dependent surfaces Colin McDiarmid Sophia Saller Department of Statistics Department of Mathematics University of Oxford University of Oxford [email protected] and DFKI [email protected] 12 June 2021 Abstract Given a function g = g(n) we let Eg be the class of all graphs G such that if G has order n (that is, has n vertices) then it is embeddable in some surface of Euler genus at most g(n), and let eEg be the corresponding class of unlabelled graphs. We give estimates of the sizes of these classes. For example we 3 g show that if g(n) = o(n= log n) then the class E has growth constant γP, the (labelled) planar graph growth constant; and when g(n) = O(n) we estimate the number of n-vertex graphs in Eg and eEg up g to a factor exponential in n. From these estimates we see that, if E has growth constant γP then we must have g(n) = o(n= log n), and the generating functions for Eg and eEg have strictly positive radius of convergence if and only if g(n) = O(n= log n). Such results also hold when we consider orientable and non-orientable surfaces separately. We also investigate related classes of graphs where we insist that, as well as the graph itself, each subgraph is appropriately embeddable (according to its number of vertices); and classes of graphs where we insist that each minor is appropriately embeddable. In a companion paper [43], these results are used to investigate random n-vertex graphs sampled uniformly from Eg or from similar classes. -
Cheminformatics for Genome-Scale Metabolic Reconstructions
CHEMINFORMATICS FOR GENOME-SCALE METABOLIC RECONSTRUCTIONS John W. May European Molecular Biology Laboratory European Bioinformatics Institute University of Cambridge Homerton College A thesis submitted for the degree of Doctor of Philosophy June 2014 Declaration This thesis is the result of my own work and includes nothing which is the outcome of work done in collaboration except where specifically indicated in the text. This dissertation is not substantially the same as any I have submitted for a degree, diploma or other qualification at any other university, and no part has already been, or is currently being submitted for any degree, diploma or other qualification. This dissertation does not exceed the specified length limit of 60,000 words as defined by the Biology Degree Committee. This dissertation has been typeset using LATEX in 11 pt Palatino, one and half spaced, according to the specifications defined by the Board of Graduate Studies and the Biology Degree Committee. June 2014 John W. May to Róisín Acknowledgements This work was carried out in the Cheminformatics and Metabolism Group at the European Bioinformatics Institute (EMBL-EBI). The project was fund- ed by Unilever, the Biotechnology and Biological Sciences Research Coun- cil [BB/I532153/1], and the European Molecular Biology Laboratory. I would like to thank my supervisor, Christoph Steinbeck for his guidance and providing intellectual freedom. I am also thankful to each member of my thesis advisory committee: Gordon James, Julio Saez-Rodriguez, Kiran Patil, and Gos Micklem who gave their time, advice, and guidance. I am thankful to all members of the Cheminformatics and Metabolism Group. -
COLORING GRAPHS USING TOPOLOGY 11 Realized by Tutte Who Called an Example of a Disc G for Which the Boundary Has Chromatic Number 4 a Chromatic Obstacle
COLORING GRAPHS USING TOPOLOGY OLIVER KNILL Abstract. Higher dimensional graphs can be used to color 2- dimensional geometric graphs G. If G the boundary of a three dimensional graph H for example, we can refine the interior until it is colorable with 4 colors. The later goal is achieved if all inte- rior edge degrees are even. Using a refinement process which cuts the interior along surfaces S we can adapt the degrees along the boundary S. More efficient is a self-cobordism of G with itself with a host graph discretizing the product of G with an interval. It fol- lows from the fact that Euler curvature is zero everywhere for three dimensional geometric graphs, that the odd degree edge set O is a cycle and so a boundary if H is simply connected. A reduction to minimal coloring would imply the four color theorem. The method is expected to give a reason \why 4 colors suffice” and suggests that every two dimensional geometric graph of arbitrary degree and ori- entation can be colored by 5 colors: since the projective plane can not be a boundary of a 3-dimensional graph and because for higher genus surfaces, the interior H is not simply connected, we need in general to embed a surface into a 4-dimensional simply connected graph in order to color it. This explains the appearance of the chromatic number 5 for higher degree or non-orientable situations, a number we believe to be the upper limit. For every surface type, we construct examples with chromatic number 3; 4 or 5, where the construction of surfaces with chromatic number 5 is based on a method of Fisk. -
Graph Theory Trees
GGRRAAPPHH TTHHEEOORRYY -- TTRREEEESS http://www.tutorialspoint.com/graph_theory/graph_theory_trees.htm Copyright © tutorialspoint.com Trees are graphs that do not contain even a single cycle. They represent hierarchical structure in a graphical form. Trees belong to the simplest class of graphs. Despite their simplicity, they have a rich structure. Trees provide a range of useful applications as simple as a family tree to as complex as trees in data structures of computer science. Tree A connected acyclic graph is called a tree. In other words, a connected graph with no cycles is called a tree. The edges of a tree are known as branches. Elements of trees are called their nodes. The nodes without child nodes are called leaf nodes. A tree with ‘n’ vertices has ‘n-1’ edges. If it has one more edge extra than ‘n-1’, then the extra edge should obviously has to pair up with two vertices which leads to form a cycle. Then, it becomes a cyclic graph which is a violation for the tree graph. Example 1 The graph shown here is a tree because it has no cycles and it is connected. It has four vertices and three edges, i.e., for ‘n’ vertices ‘n-1’ edges as mentioned in the definition. Note − Every tree has at least two vertices of degree one. Example 2 In the above example, the vertices ‘a’ and ‘d’ has degree one. And the other two vertices ‘b’ and ‘c’ has degree two. This is possible because for not forming a cycle, there should be at least two single edges anywhere in the graph. -
Learning Max-Margin Tree Predictors
Learning Max-Margin Tree Predictors Ofer Meshiy∗ Elad Ebany∗ Gal Elidanz Amir Globersony y School of Computer Science and Engineering z Department of Statistics The Hebrew University of Jerusalem, Israel Abstract years using structured output prediction has resulted in state-of-the-art results in many real-worlds problems from computer vision, natural language processing, Structured prediction is a powerful frame- computational biology, and other fields [Bakir et al., work for coping with joint prediction of 2007]. Such predictors can be learned from data using interacting outputs. A central difficulty in formulations such as Max-Margin Markov Networks using this framework is that often the correct (M3N) [Taskar et al., 2003, Tsochantaridis et al., 2006], label dependence structure is unknown. At or conditional random fields (CRF) [Lafferty et al., the same time, we would like to avoid an 2001]. overly complex structure that will lead to intractable prediction. In this work we ad- While the prediction and the learning tasks are dress the challenge of learning tree structured generally computationally intractable [Shimony, 1994, predictive models that achieve high accuracy Sontag et al., 2010], for some models they can be while at the same time facilitate efficient carried out efficiently. For example, when the model (linear time) inference. We start by proving consists of pairwise dependencies between output vari- that this task is in general NP-hard, and then ables, and these form a tree structure, prediction can suggest an approximate alternative. Our be computed efficiently using dynamic programming CRANK approach relies on a novel Circuit- at a linear cost in the number of output variables RANK regularizer that penalizes non-tree [Pearl, 1988]. -
Arxiv:1506.09145V2 [Math.CO] 18 Oct 2018 [email protected]
Track Layouts, Layered Path Decompositions, and Leveled Planarity∗ Michael J. Bannister§ William E. Devanny¶ Vida Dujmovi´c† David Eppstein¶ David R. Wood‡ Abstract. We investigate two types of graph layouts, track layouts and layered path decompositions, and the relations between their associated parameters track-number and layered pathwidth. We use these two types of layouts to characterize leveled planar graphs, which are the graphs with planar leveled drawings with no dummy vertices. It follows from the known NP-completeness of leveled planarity that track-number and layered pathwidth are also NP-complete, even for the smallest constant parameter values that make these parameters nontrivial. We prove that the graphs with bounded layered pathwidth include outerplanar graphs, Halin graphs, and squaregraphs, but that (despite having bounded track-number) series-parallel graphs do not have bounded layered pathwidth. Finally, we investigate the parameterized complexity of these layouts, showing that past methods used for book layouts do not work to parameterize the problem by treewidth or almost-tree number but that the problem is (non- uniformly) fixed-parameter tractable for tree-depth. Keywords. track layouts, layered path decompositions, track-number, layered pathwidth, leveled planar graphs, outerplanar graphs, Halin graphs, square- graphs, unit disc graphs, parameterized complexity, treewidth, almost-tree number, tree-depth. October 19, 2018 ∗ A preliminary version of this paper entitled “Track Layout is Hard” was published in Proc. of 24th International Symp. on Graph Drawing and Network Visualization (GD ’16), Lecture Notes in Computer Science 9801:499–510, Springer, 2016. § Department of Mathematics and Computer Science, Santa Clara University, California, USA, arXiv:1506.09145v2 [math.CO] 18 Oct 2018 [email protected].