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Annadel Cabanban Emily Capuli Rainer Froese Daniel Pauly
Biodiversity of Southeast Asian Seas , Palomares and Pauly 15 AN ANNOTATED CHECKLIST OF PHILIPPINE FLATFISHES : ECOLOGICAL IMPLICATIONS 1 Annadel Cabanban IUCN Commission on Ecosystem Management, Southeast Asia Dumaguete, Philippines; Email: [email protected] Emily Capuli SeaLifeBase Project, Aquatic Biodiversity Informatics Office Khush Hall, IRRI, Los Baños, Laguna, Philippines; Email: [email protected] Rainer Froese IFM-GEOMAR, University of Kiel Duesternbrooker Weg 20, 24105 Kiel, Germany; Email: [email protected] Daniel Pauly The Sea Around Us Project , Fisheries Centre, University of British Columbia, 2202 Main Mall, Vancouver, British Columbia, Canada, V6T 1Z4; Email: [email protected] ABSTRACT An annotated list of the flatfishes of the Philippines was assembled, covering 108 species (vs. 74 in the entire North Atlantic), and thus highlighting this country's feature of being at the center of the world's marine biodiversity. More than 80 recent references relating to Philippine flatfish are assembled. Various biological inferences are drawn from the small sizes typical of Philippine (and tropical) flatfish, and pertinent to the "systems dynamics of flatfish". This was facilitated by FishBase, which documents all data presented here, and which was used to generate the graphs supporting these biological inferences. INTRODUCTION Taxonomy, in its widest sense, is at the root of every scientific discipline, which must first define the objects it studies. Then, the attributes of these objects can be used for various classificatory and/or interpretive schemes; for example, the table of elements in chemistry or evolutionary trees in biology. Fisheries science is no different; here the object of study is a fishery, the interaction between species and certain gears, deployed at certain times in certain places. -
An Annotated Checklist of Philippine Flatfish: Ecological Implications3'
An Annotated Checklist of Philippine Flatfish: Ecological Implications3' A. Cabanbanb) E. Capulic) R. Froesec) and D. Pauly1" Abstract An annotated list of the flatfish of the Philippines was assembled, covering 108 species (vs. 74 in the entire North Atlantic), and thus highlighting this country's feature of being at the center of the world's marine biodiversity. More than 80 recent references relating to Philippine flatfish are assembled. Various biological inferences are drawn from the small sizes typical of Philippine (and tropical) flatfish, and pertinent to the "systems dynamics of flatfish". This was facilitated by the FishBase CD-ROM, which documents all data presented here, and which was used to generate the graphs supporting these biological inferences. a) For presentation at the Third International Symposium on Flatfish Ecology, 2-8 November 1996, Netherlands Institute for Sea Research (NIOZ), Texel, The Netherlands. ICLARM Contribution No. 1321. b> Borneo Marine Research Unit, Universiti Malaysia Sabah, 9th Floor Gaya Centre, Jalan Tun Fuad Stephens, Locked Bag 2073, 88999 Kota Kinabalu, Sabah, Malaysia. c) International Center for Living Aquatic Resources Management (ICLARM), MCPO Box 2631, 0718 Makati City, Philippines. d) Fisheries Centre, University of British Columbia, 2204 Main Mall, Vancouver, B.C. Canada V6T 1Z4. E- mail: [email protected]. Introduction Taxonomy, in its widest sense, is at the root of every scientific discipline, which must first define the objects it studies. Then, the attributes of these objects can be used for various classificatory and/or interpretive schemes; for example, the table of elements in chemistry or evolutionary trees in biology. Fisheries science is no different; here the object of study is a fishery, the interaction between species and certain gears, deployed at certain times in certain places. -
Studies on the Larvae of a Few Demersal Fishes of the South West Coast of India
,.e;4o2/2 .. STUDIES ON THE LARVAE OF A FEW DEMERSAL FISHES OF THE SOUTH WEST COAST OF INDIA BY M. P. DILEEP. THESIS SUBMITTED TO THE COCHIN UNIVERSITY OF SCIENCE AND TECHNOLOGY IN PARTIAL FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY DECEMBER 1989. DECLARATION I hereby declare that the thesis entitled Studies on the larvae of a few demersal fishes of the south west coast of India has not previously formed the basis of the award of -r ,3 . fig“ " I similar title or E a i Cochin 16. December, 1989. CERTIFICATE This is to certify that this thesis is an authentic record of the work carried out by Mr. M.P. Dileep under my supervision at the UNDP/FAO/Pelagic Fishery Project, and School of Marine Sciences, Cochin University of Science <3: Technology and that no part thereof has been presented for any other degree in any University. c- """"‘ : Prof. (Dr.) C.V. Kurian Emeritus Scientist and Former Professor and Head of the Department of Marine Sciences December,Cochin 16, 1989. University (Supervising of CochinTeacher) ACKNOWLEDGEMENTS I am greatly indebted to Prof. (Dr.) C.V. Kurian, D.Sc., Retired Professor and Head of the Department of Marine Sciences, University of Cochin, for his guidance, criticisms and discussions without which this work would not have been possible. I am grateful to Dr. K.C. George, Scientist, CMFRI for the help and encouragement given during the study. My thanks are due to the authorities of UNDP/FAO/Pelagic Fishery Project Cochin, for making available the materials and laboratory facilities for the work and also to Cochin University of Science and Technology for providing me a Junior Research Fellowship. -
Early Ontogeny and Systematics of Bothidae, Pleuronectoidei
BULLETIN OF MARINE SCIENCE, 60(1): 192-212,1997 EARLY ONTOGENY AND SYSTEMATICS OF BOTHIDAE, PLEURONECTOIDEI Atsushi Fukui ABSTRACT Of the 20 bothid genera, larvae of the following 16 genera are presently known: Taeniop- settinae, (1) Taeniopsella, (2) Engyophrys, (3) Trichopsetta; Bothinae, (4) Parabothus, (5) Tosarhombus, (6) Crossorhombus, (7) Engyprosopon, (8) Bothus, (9) Grammatobothus, (10) Asterorhombus, (11) Psellina, (12) Lophonectes, (13) Arnoglossus, (14) Monolene, (15) Laeops, (16) Chascanopsetta, This study reviews the early ontogeny and systematics of bothids of the world. A cladistic analysis of 16 characters results in 25 equally parsimonious trees. A strict consensus tree for these 25 trees is shown. It has resolved two monophyletic groups and unresolved polytomy at basal nodes. The two monophyletic groups indicate that (1) Asterorhombu,\' and Engyprosopon except sp.2 of the subfamily Bothinae are sister group for the subfamily Taeniopsettinae, (2) Arnoglossus and Engyprosopon is not monophyletic, and (3) Taeniopsetta, Engyophrys, and Trichopsetta of the subfamily Taeniopsettinae are monophyletic. Fishes of the family Bothidae, suborder Pleuronectoidei, are very diverse, being comprised of 20 genera in two subfamilies, four in Taeniopsettinae and 16 in Bothinae (Amaoka, 1969; Ahlstrom et aI., 1984), The larvae of this family have a transparent, extremely compressed, body. The dorsal fin begins anterior to the eye, its second ray being elongated. The pelagic larvae are the largest among the pleuronectoid fishes, e.g., Chascanopsetta lu- gubris with 120-mm larvae, Many studies have been made on bothid larvae, e.g" Amaoka (1964, 1970, 1971a, 1972, 1973, 1974, 1976), Futch (1977), and Hensley (1977). Ahlstrom et aI. (1984) reviewed these studies. -
Novel Gene Rearrangement and the Complete Mitochondrial Genome of Cynoglossus Monopus: Insights Into the Envolution of the Family Cynoglossidae (Pleuronectiformes)
International Journal of Molecular Sciences Article Novel Gene Rearrangement and the Complete Mitochondrial Genome of Cynoglossus monopus: Insights into the Envolution of the Family Cynoglossidae (Pleuronectiformes) Chen Wang 1, Hao Chen 2, Silin Tian 1, Cheng Yang 1 and Xiao Chen 1,3,* 1 College of Marine Sciences, South China Agriculture University, Guangzhou 510642, China; [email protected] (C.W.); [email protected] (S.T.); [email protected] (C.Y.) 2 Cell and Molecular Biology Program, University of Arkansas, Fayetteville, AR 72701, USA; [email protected] 3 Guangdong Laboratory for Lingnan Modern Agriculture, South China Agriculture University, Guangzhou 510642, China * Correspondence: [email protected]; Tel.: +86-139-2210-4624; Fax: +86-20-8528-0547 Received: 12 August 2020; Accepted: 16 September 2020; Published: 20 September 2020 Abstract: Cynoglossus monopus, a small benthic fish, belongs to the Cynoglossidae, Pleuronectiformes. It was rarely studied due to its low abundance and cryptical lifestyle. In order to understand the mitochondrial genome and the phylogeny in Cynoglossidae, the complete mitogenome of C. monopus has been sequenced and analyzed for the first time. The total length is 16,425 bp, typically containing 37 genes with novel gene rearrangements. The tRNA-Gln gene is inverted from the light to the heavy strand and translocated from the downstream of tRNA-Ile gene to its upstream. The control region (CR) translocated downstream to the 3’-end of ND1 gene adjoining to inverted to tRNA-Gln and left a 24 bp trace fragment in the original position. The phylogenetic trees were reconstructed by Bayesian inference (BI) and maximum likelihood (ML) methods based on the mitogenomic data of 32 tonguefish species and two outgroups. -
The Tree of Life and a New Classification of Bony Fishes
The Tree of Life and a New Classification of Bony Fishes April 18, 2013 · Tree of Life Ricardo Betancur-R.1, Richard E. Broughton2, Edward O. Wiley3, Kent Carpenter4, J. Andrés López5, Chenhong Li 6, Nancy I. Holcroft7, Dahiana Arcila1, Millicent Sanciangco4, James C Cureton II2, Feifei Zhang2, Thaddaeus Buser, Matthew A. Campbell5, Jesus A Ballesteros1, Adela Roa-Varon8, Stuart Willis9, W. Calvin Borden10, Thaine Rowley11, Paulette C. Reneau12, Daniel J. Hough2, Guoqing Lu13, Terry Grande10, Gloria Arratia3, Guillermo Ortí1 1 The George Washington University, 2 University of Oklahoma, 3 University of Kansas, 4 Old Dominion University, 5 University of Alaska Fairbanks, 6 Shanghai Ocean University, 7 Johnson County Community College, 8 George Washington University, 9 University of Nebraska-Lincoln, 10 Loyola University Chicago, 11 University of Nebraska- Omaha, 12 Florida A&M University, 13 University of Nebraska at Omaha Betancur-R. R, Broughton RE, Wiley EO, Carpenter K, López JA, Li C, Holcroft NI, Arcila D, Sanciangco M, Cureton II JC, Zhang F, Buser T, Campbell MA, Ballesteros JA, Roa-Varon A, Willis S, Borden WC, Rowley T, Reneau PC, Hough DJ, Lu G, Grande T, Arratia G, Ortí G. The Tree of Life and a New Classification of Bony Fishes. PLOS Currents Tree of Life. 2013 Apr 18 [last modified: 2013 Apr 23]. Edition 1. doi: 10.1371/currents.tol.53ba26640df0ccaee75bb165c8c26288. Abstract The tree of life of fishes is in a state of flux because we still lack a comprehensive phylogeny that includes all major groups. The situation is most critical for a large clade of spiny-finned fishes, traditionally referred to as percomorphs, whose uncertain relationships have plagued ichthyologists for over a century. -
Evidence for a Robertsonian Fusion in Solea Senegalensis (Kaup, 1858) Revealed by Zoo- FISH and Comparative Genome Analysis Aglaya García-Angulo1, Manuel A
García-Angulo et al. BMC Genomics (2018) 19:818 https://doi.org/10.1186/s12864-018-5216-6 RESEARCH ARTICLE Open Access Evidence for a Robertsonian fusion in Solea senegalensis (Kaup, 1858) revealed by zoo- FISH and comparative genome analysis Aglaya García-Angulo1, Manuel A. Merlo1, Silvia Portela-Bens1, María E. Rodríguez1, Emilio García1, Ahmed Al-Rikabi2, Thomas Liehr2 and Laureana Rebordinos1* Abstract Background: Solea senegalensis (Kaup, 1858) is a commercially important flatfish species, belonging to the Pleuronectiformes order. The taxonomy of this group has long been controversial, and the karyotype of the order presents a high degree of variability in diploid number, derived from chromosomal rearrangements such as Robertsonian fusions. Previously it has been proposed that the large metacentric chromosome of S. senegalensis arises from this kind of chromosome rearrangement and that this is a proto-sex chromosome. Results: In this work, the Robertsonian origin of the large metacentric chromosome of S. senegalensis has been tested by the Zoo-FISH technique applied to two species of the Soleidae family (Dicologlossa cuneata and Dagetichthys lusitanica), and by comparative genome analysis with Cynoglossus semilaevis. From the karyotypic analysis we were able to determine a chromosome complement comprising 2n = 50 (FN = 54) in D. cuneata and 2n = 42 (FN = 50) in D. lusitanica. The large metacentric painting probe gave consistent signals in four acrocentric chromosomes of the two Soleidae species; and the genome analysis proved a common origin with four chromosome pairs of C. semilaevis.Asa result of the genomic analysis, up to 61 genes were annotated within the thirteen Bacterial Artificial Chromosome clones analysed. -
Bothidae 3799
click for previous page Pleuronectiformes: Bothidae 3799 BOTHIDAE Lefteye flounders by D.A. Hensley and K. Amaoka iagnostic characters: Body shape variable, deep to elongate, compressed (size to 88 cm). Margin Dof preopercle distinct, not covered by skin and scales; males of some species show various combinations of sexually dimorphic characters on head such as wider interorbital areas and rostral and/or orbital spines. Eyes on left side of head, reversals rare; some species with tentacles on the eyes. Dorsal-fin origin above or ahead of anterior margin of upper eye; no fin spines; urinary papilla on eyed side; caudal fin not attached to dorsal and anal fins; caudal fin usually with 17 rays; in some species certain fin rays are elongate in the males; pectoral fin of blind side present but shorter than pectoral fin on eyed side (in Indo-West Pacific species); pelvic fins present, with 6 or 7 soft rays; pelvic fin of eyed side on midventral line with origin anterior to origin of pelvic fin of blind side; pelvic fin of blind side above midventral line. Lateral line of eyed side with high arch over pectoral fin; lateral line absent below lower eye. Five series of intermuscular bones present. Colour: eyed side usually with spots, blotches, or rings; blind side light coloured except in some species in which males have a dark colour pattern on the blind side. - , , - examples of deep-bodied lefteye flounder species examples of lefteye flounder species showing dark showing various combinations of sexually dimorphic colour patterns on the blind -
Phylogenetic Position of the Citharidae, a Family of Flatfishes
MISCELLANEOUS PUBLICATIONS MUSEUM OFZOOLOGY, UNIVERSITY OFMICHIGAN, NO. 63 PHYLOGENETIC POSITION OF THE CITHARIDAE, A FAMILY OF FLATFISHES BY CARL L. HUBBS ANN ARBOR UNIVERSITY OF MICHIGAN PRESS NOVEMBER23, 1945 PRICE LIST OF THE MISCELLANEOUS PUBLICATIONS OF THE blIUSEUM OF ZOOLOGY, UNIVERSITY OF MICHIGAN Address inquiries to the Director of the Museum of Zoology, AM Arbor, Michigan. Bound in Paper No. 1. Directions for Collecting and Preserving Specimens of Dragonflies for Museum Purposes. By E. B. WILLIAMSON.(1916) Pp. 15, 3 figures GO.% NO. 2. An Annotated List of the Odonata of Indiana. By E. B. WILLIAMSON. (1917) Pp. 12, 1 map $0.26 No. 3. A Collecting Trip to Col (1918) Pp. 24. (Out of print) No. 4. Contributions to the Botany of Michigan. By C. E. DODGE. (1918) $0.26 NO. 5. $0.46 No. 6. 213,l plate, 223 figures $3.00 No. 7. (1922) Pp. 57, 3 plates $0.76 No. 8. The Amphibians and Reptiles of the Sierra Nevada de Santa Marta, Colombia. By ALEXANDERQ. RUTHVEN.(1922) Pp. 69, 13 plates, 2 flgures, 1 map $1.00 No. 9. Notes on American Species of Triaca a and Gynacantha. E. B. WILLIAMSON.(1923) Pp. 67, 7 plate $0.76 NO. 10. A Preliminary Survey of the Bird Life of North Dakota. By NORMAN A. WOOD. (1923) Pp. 85, G plates, 1 map $1.00 No. 11. Notes on the Genus Erythemis, with a Description of a New Species (Odonata). By E. B. WILLIAMSON. The Phylogeny and the Distribution of the Genus Erythemis (Odonata). By CLARENCEH. KENNEDY.(1923) Pp. -
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MARINE ECOLOGY PROGRESS SERIES Vol. 131: 17-34, l996 Published February 8 Mar Ecol Prog Ser 1 Factors affecting spatial variability in seine net catches of fish in the surf zone of False Bay, South Africa B. M. Clark*,B. A. Bennett, S. J. Lamberth Zoology Department and Marine Biology Research Institute, University of Cape Town, Rondebosch 7700, South Africa ABSTRACT Ichthyofaunal assemblages at 11 surf zone localities along the perimeter of False Bay South Afnca were sampled by seine netting at monthly intervals between July 1991 and June 1993 Sampllng localit~eswere selected to encompass as wide a range of physical vanables as possible incor- poratlng sheltered, exposed, sandy and mixed-shore habitats, thus providing a colnprehensive assess- ment of the factors lnfluenclng surf zone fish assemblages Data collected at each site were averaged over the 2 yr pei~odin order to highlight the influence of various physical environnlental vanables on the abundance and co~nmunitystructure ot these assemblages Athenr~abrevlceps, Liza rlchardsonii and Rhahdosarg~lsgloh~ceps were numeiically domlnant at all sites together providing between 69 and 99%)of the catches Overall catches of juvenile flsh exceeded that ot adult fish, making up almost 53 of the catch Fish abundance (no ind per 100 m') and number of species recorded at each site ranged from 6 to 199 and from 12 to 31 respectivel) Multivdriate analyses Indicated that the deglee of wave exposure the presencc of emergent rock on the shore dnd turbid~tywere responsible for most of the spat~alvanab~lity in abundance and community structure observed Although of lesser importance abundance of detached macrophytes salinity dnd water temperature also played a role in structuring fish assemblages Species specific preferences for varying combinations of these var~ablesare respon- sible for fluctuations in the structure and overall abundance of assemblages in different area KEY WORDS: Surf zone fish . -
Molecular and Morphological Analysis of Living and Fossil Taxa
Received: 22 December 2018 | Revised: 10 June 2019 | Accepted: 10 June 2019 DOI: 10.1111/zsc.12372 ORIGINAL ARTICLE Origins and relationships of the Pleuronectoidei: Molecular and morphological analysis of living and fossil taxa Matthew A. Campbell1 | Bruno Chanet2 | Jhen‐Nien Chen1 | Mao‐Ying Lee1 | Wei‐Jen Chen1 1Institute of Oceanography, National Taiwan University, Taipei, Taiwan Abstract 2Département Origines et Évolution, Flatfishes (Pleuronectiformes) are a species‐rich and distinct group of fishes charac- Muséum National d‘Histoire Naturelle, terized by cranial asymmetry. Flatfishes occupy a wide diversity of habitats, includ- Paris, France ing the tropical deep‐sea and freshwaters, and often are small‐bodied fishes. Most Correspondence scientific effort, however, has been focused on large‐bodied temperate marine species Wei‐Jen Chen, Institute of Oceanography, important in fisheries. Phylogenetic study of flatfishes has also long been limited in National Taiwan University, Room 301, scope and focused on the placement and monophyly of flatfishes. As a result, several No.1 Sec. 4 Roosevelt Rd., Taipei 10617, Taiwan. questions in systematic biology have persisted that molecular phylogenetic study can Email: [email protected] answer. We examine the Pleuronectoidei, the largest suborder of Pleuronectiformes with >99% of species diversity of the order, in detail with a multilocus nuclear and Funding information Ministry of Science and Technology, mitochondrial data set of 57 pleuronectoids from 13 families covering a wide range of Taiwan, Grant/Award Number: 102-2923- habitats. We combine the molecular data with a morphological matrix to construct a B-002 -001 and 107-2611-M-002-007; Fulbright Taiwan; Agence Nationale de la total evidence phylogeny that places fossil flatfishes among extant lineages. -
Seamounts Scoping Study Etude Exploratoire Sur Les Monts Sous
Seamounts scoping study Etude exploratoire sur les monts sous- marins Biodiversity and Ecosystems Series 2020 Seamounts scoping study Acknowledgements The scoping study was produced by Norway as lead country for the collective action to compile the latest knowledge on species and habitats supported by seamounts. Experts who contributed to the scoping study are recognised in the addended report. 1 OSPAR Commission 2020 OSPAR Convention Convention OSPAR The Convention for the Protection of the Marine La Convention pour la protection du milieu marin Environment of the North-East Atlantic (the de l'Atlantique du Nord-Est, dite Convention “OSPAR Convention”) was opened for signature at OSPAR, a été ouverte à la signature à la réunion the Ministerial Meeting of the former Oslo and ministérielle des anciennes Commissions d'Oslo et Paris Commissions in Paris on 22 September 1992. de Paris, à Paris le 22 septembre 1992. La The Convention entered into force on 25 March Convention est entrée en vigueur le 25 mars 1998. 1998. The Contracting Parties are Belgium, Les Parties contractantes sont l'Allemagne, Denmark, the European Union, Finland, France, la Belgique, le Danemark, l’Espagne, la Finlande, la Germany, Iceland, Ireland, Luxembourg, the France, l’Irlande, l’Islande, le Luxembourg, la Netherlands, Norway, Portugal, Spain, Sweden, Norvège, les Pays-Bas, le Portugal, le Royaume-Uni Switzerland and the United Kingdom. de Grande Bretagne et d’Irlande du Nord, la Suède, la Suisse et l’Union européenne. 2 Seamounts scoping study Contents ENGLISH VERSION PAGES 1-8, VERSION FRANCAIS PAGES 9-14, ADDENDUM PAGES 15-128 1. Introduction .................................................................................................................................... 4 1.1 OSPAR Recommendation 2014/9 on furthering the protection and conservation of seamounts in Regions I, IV and V of the OSPAR maritime area ............................................................................