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Production Scientifique Cedric Berney Cédric Berney – full list of publications 2019 Adl SM, Bass D, Lane CE, Lukeš J, Schoch CL, Smirnov A, Agatha S, Berney C , Brown MW, Burki F, Cárdenas P, Čepička I, Chistyakova L, del Campo J, Dunthorn M, Edvardsen B, Eglit Y, Guillou L, Hampl V, Heiss AA, Hoppenrath M, James TY, Karnkowska A, Karpov S, Kim E, Kolisko M, Kudryavtsev A, Lahr DJG, Lara E, Le Gall L, Lynn DH, Mann DG, Massana R, Mitchell EAD, Morrow C, Park JS, Pawlowski JW, Powell MJ, Richter DJ, Rueckert S, Shadwick L, Shimano S, Spiegel FW, Torruella G, Youssef N, Zlatogursky V, Zhang Q. Revisions to the classification, nomenclature, and diversity of Eukaryotes. J. Eukaryot. Microbiol . 66 :4-119. | https://doi.org/10.1111/jeu. 12691 2018 Bass D, Czech L, Williams BAP, Berney C , Dunthorn M, Mahé F, Torruella G, Stentiford GD, Williams TA. Clarifying the relationships between Microsporidia and Cryptomycota. J. Eukaryot. Microbiol . 65:773-782. | https://doi.org/10.1111/jeu.12519 Bass D, Tikhonenkov DV, Foster R, Dyal P, Janouškovec J, Keeling PJ, Gardner M, Neuhauser S, Hartikainen H, Mylnikov AP, Berney C . Rhizarian ‘Novel Clade 10’ revealed as abundant and diverse planktonic and terrestrial flagellates, including Aquavolon n. gen. J. Eukaryot. Microbiol . 65 :828-842. | https://doi.org/10.1111/jeu.12524 del Campo J, Kolisko M, Boscaro V, Santoferrara LF, Nenarokov S, Massana R, Guillou L, Simpson A, Berney C , de Vargas C, Brown MW, Keeling PJ, Wegener Parfrey L. 2018. EukRef: Phylogenetic curation of ribosomal RNA to enhance understanding of eukaryotic diversity and distribution. PLoS Biol . 16 :e2005849. | https://doi.org/10.1371/journal.pbio.2005849 Ward GM, Neuhauser S, Groben R, Ciaghi S, Berney C , Romac S, Bass D. 2018. Environmental sequencing fills the gap between parasitic haplosporidians and free-living giant amoebae. J. Eukaryot. Microbiol . 65 :574-586. | https://doi.org/10.1111/jeu.12501 2017 Berney C , Ciuprina A, Bender S, Brodie J, Edgcomb V, Kim E, Rajan J, Wegener Parfrey L, Adl S, Audic S, Bass D, Caron DA, Cochrane G, Czech L, Dunthorn M, Geisen S, Glöckner FO, Mahé F, Quast C, Kaye JZ, Simpson AGB, Stamatakis A, del Campo J, Yilmaz P, de Vargas C. 2017. UniEuk: time to speak a common language in protistology! J. Eukaryot. Microbiol . 64 :407-411. | https://doi.org/10.1111/jeu.12414 Smirnov A, Nassonova E, Geisen S, Bonkowski M, Kudryavtsev A, Berney C , Glotova A, Bondarenko N, Dykova I, Mrva M, Fahrni J, Pawlowski J. 2017. Phylogeny and systematics of leptomyxid amoebae (Amoebozoa, Tubulinea, Leptomyxida). Protist 168 :220-252. | https://doi.org/10.1016/j.protis.2016.10.006 Yi Z, Berney C , Hartikainen H, Mahamdallie S, Gardner M, Boenigk J, Cavalier-Smith T, Bass D. 2017. High throughput sequencing of microbial eukaryotes in Lake Baikal reveals ecologically differentiated communities and novel evolutionary radiations. FEMS Microbiol. Ecol. 93 :fix073. | https://doi.org/10.1093/femsec/fix073 Geisen S, Mitchell EAD, Wilkinson DM, Adl S, Bonkowski M, Brown MW, Fiore-Donno AM, Heger TJ, Jassey VEJ, Krashevska V, Lahr DJG, Marcisz K, Mulot M, Payne R, Singer D, Anderson OR, Charman DJ, Ekelund F, Griffiths BS, Rønn R, Smirnov A, Bass D, Belbahri L, Berney C , Blandenier Q, Chatzinotas A, Clarholm M, Dunthorn M, Feest A, Fernández LD, Foissner W, Fournier B, Gentekaki E, Hájek M, Helder J, Jousset A, Koller R, Kumar S, La Terza A, Lamentowicz M, Mazei Y, Santos SS, Seppey CVW, Spiegel FW, Walochnik J, Winding A, Lara E. 2017. Soil protistology rebooted: 30 fundamental questions to start with. Soil Biol. Biochem. 111 :94-103. | https://doi.org/10.1016/j.soilbio.2017.04.001 Mahé F, de Vargas C, Bass D, Czech L, Stamatakis A, Lara E, Singer D, Mayor J, Bunge J, Sernaker S, Siemensmeyer T, Trautmann I, Romac S, Berney C , Kozlov A, Mitchell EAD, Seppey CVW, Egge E, Lentendu G, Wirth R, Trueba G, Dunthorn M. 2017. Parasites dominate hyperdiverse soil protist communities in Neotropical rainforests. Nat. Ecol. Evol. 1:0091. | https://doi.org/10.1038/s41559-017-0091 2016 Mordret S, Romac S, Henry N, Colin S, Carmichael M, Berney C , Audic S, Richter D, de Vargas C, Decelle J. 2016. The symbiotic life of Symbiodinium in the open ocean within a new species of calcifying planktonic ciliate ( Tiarina sp.). ISME J. 10 :1424-1436. | https://doi.org/10.1038/ismej.2015.211 Schwelm A, Berney C , Dixelius C, Bass D, Neuhauser S. 2016. The large subunit rDNA sequence of Plasmodiophora brassicae does not contain intra-species polymorphism. Protist 167 :544-554. | https://doi.org/10.1016/j.protis.2016.08.008 Van Wichelen J, D'Hondt S, Claeys M, Vyverman W, Berney C , Bass D, Vanormelingen P. 2016. A hotspot of amoebae diversity: 8 new naked amoebae associated with the planktonic bloom-forming cyanobacterium Microcystis . Acta Protozool . 55 :61-87. | https://doi.org/10.4467/16890027AP.16.007.4942 Ward GM, Bennett M, Bateman K, Stentiford GD, Kerr R, Feist SW, Williams ST, Berney C , Bass D. 2016. A new phylogeny and environmental DNA insight into paramyxids: an increasingly important but enigmatic clade of protistan parasites of marine invertebrates. Int. J. Parasitol . 46 :605-619. | https://doi.org/10.1016/j.ijpara.2016.04.010 2015 Berney C , Geisen S, Van Wichelen J, Nitsche F, Vanormelingen P, Bonkowski M, Bass D. 2015. Expansion of the 'reticulosphere': diversity of novel branching and network-forming amoebae helps to define Variosea (Amoebozoa). Protist 166 :271-295. | https://doi.org/10.1016/j.protis.2015.04.001 Cavalier-Smith T, Fiore-Donno AM, Chao E, Kudryavtsev A, Berney C , Snell EA, Lewis R. 2015. Multigene phylogeny resolves deep branching of Amoebozoa. Mol. Phylogenet. Evol. 83 :293-304. | https://doi.org/10.1016/j.ympev.2014.08.011 de Vargas C, Audic S, Henry N, Decelle J, Mahà F, Logares R, Lara E, Berney C , Le Bescot N, ProbertI, Carmichael M, Poulain J, Romac S, Colin S, Aury JM, Bittner L, Chaffron S, Dunthorn M, Engelen S, Flegontova O, Guidi L, Horák A, Jaillon O, Lima-Mendez G, Lukeš J, Malviya S, Morard R, Mulot M, Scalco E, Siano R, Vincent F, Zingone A, Dimier C, Picheral M, Searson S, Kandels-Lewis S, Tara Oceans Coordinators , Acinas SG, Bork P, Bowler C, Gorsky G, Grimsley N, Hingamp P, Iudicone D, Not F, Ogata H, Pesant S, Raes J, Sieracki ME, Speich S, Stemmann L, Sunagawa S, Weissenbach J, Wincker P, Karsenti E. 2015. Eukaryotic plankton diversity in the sunlit ocean. Science 348 :1261605. | https://doi.org/10.1126/science.1261605 2014 Cavalier-Smith T, Chao EE, Snell EA, Berney C , Fiore-Donno AM, Lewis R. 2014. Multigene eukaryote phylogeny reveals the likely protozoan ancestors of opisthokonts (animals, fungi, choanozoans) and Amoebozoa. Mol. Phylogenet. Evol. 81 :71-85. | https://doi.org/10.1016/j.ympev.2014.08.012 Chambouvet A, Berney C , Romac S, Audic S, Maguire F, de Vargas C, Richards TA. 2014. Diverse molecular signatures for ribosomally ‘active’ Perkinsea in marine sediments. BMC Microbiol. 14 :110. | https://doi.org/10.1186/1471-2180-14-110 Hartikainen H, Ashford OS, Berney C , Okamura B, Feist SW, Baker-Austin C, Stentiford GD, Bass D. 2014. Lineage- specific molecular probing reveals novel diversity and ecological partitioning of Haplosporidians. ISME J. 8:177-186. | https://doi.org/10.1038/ismej.2013.136 Hartikainen H, Stentiford GD, Bateman KS, Berney C , Feist SW, Longshaw M, Okamura B, Stone D, Ward G, Wood C, Bass D. 2014. Mikrocytids are a broadly distributed and divergent radiation of parasites in aquatic invertebrates. Curr. Biol. 24 :807-812. | https://doi.org/10.1016/j.cub.2014.02.033 2013 Berney C , Romac S, Mahé F, Santini S, Siano R, Bass D. 2013. Vampires in the oceans: predatory Cercozoan amoebae in marine habitats. ISME J. 7:2387-2399. | https://doi.org/10.1038/ismej.2013.116 Guillou L, Bachar D, Audic S, Bass D, Berney C , Bittner L, Boutte C, Burgaud G, de Vargas C, Decelle J, del Campo J, Dolan JR, Dunthorn M, Edvardsen B, Holzmann M, Kooistra WHCF, Lara E, Le Bescot N, Logares R, Mahé F, Massana R, Montresor M, Morard R, Not F, Pawlowski J, Probert I, Sauvadet AL, Siano R, Stoeck T, Vaulot D, Zimmermann P, Christen R. 2013. The Protist Ribosomal Reference database (PR 2): a catalog of unicellular eukaryote small sub-unit rRNA sequences with curated taxonomy. Nucl. Acids Res. 41 :D597-D604. | https://doi.org/10.1093/nar/gks1160 2012 Bass D, Yabuki A, Santini S, Romac S, Berney C . 2012. Reticulamoeba is a long-branched Granofilosean (Cercozoa) that is missing from sequence databases. PLoS One 7:e49090. | https://doi.org/10.1371/journal.pone.0049090 Pawlowski J, Audic S, Adl S, Bass D, Belbahri L, Berney C , Bowser SS, Cepicka I, Decelle J, Dunthorn M, Fiore- Donno AM, Gile GH, Holzmann M, Jahn R, Jirků M, Keeling PJ, Kostka M, Kudryavtsev A, Lara E, Lukeš J, Mann DG, Mitchell EAD, Nitsche F, Romeralo M, Saunders GW, Simpson AGB, Smirnov AV, Spouge JL, Stern RF, Stoeck T, Zimmermann J, Schindel D, de Vargas C. 2012. CBOL Protist Working Group: Barcoding Eukaryotic richness beyond the Animal, Plant, and Fungal kingdoms. PLoS Biol. 10 :e1001419. | https://doi.org/10.1371/journal.pbio.1001419 2011 Glücksman E, Snell EA, Berney C , Chao EE, Bass D, Cavalier-Smith T. 2011. The novel marine gliding zooflagellate genus Mantamonas (Mantamonadida ord. n.: Apusozoa). Protist 162 :207-221. | https://doi.org/10.1016/j.protis.2010.06.004 2010 Bråte J, Logares R, Berney C , Ree KR, Klaveness D, Jakobsen KS, Shalchian-Tabrizi K. 2010.
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