Daftar Program Untuk Komputer Grafik Dan Pengolahan Citra
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Stardust: Accessible and Transparent GPU Support for Information Visualization Rendering
Eurographics Conference on Visualization (EuroVis) 2017 Volume 36 (2017), Number 3 J. Heer, T. Ropinski and J. van Wijk (Guest Editors) Stardust: Accessible and Transparent GPU Support for Information Visualization Rendering Donghao Ren1, Bongshin Lee2, and Tobias Höllerer1 1University of California, Santa Barbara, United States 2Microsoft Research, Redmond, United States Abstract Web-based visualization libraries are in wide use, but performance bottlenecks occur when rendering, and especially animating, a large number of graphical marks. While GPU-based rendering can drastically improve performance, that paradigm has a steep learning curve, usually requiring expertise in the computer graphics pipeline and shader programming. In addition, the recent growth of virtual and augmented reality poses a challenge for supporting multiple display environments beyond regular canvases, such as a Head Mounted Display (HMD) and Cave Automatic Virtual Environment (CAVE). In this paper, we introduce a new web-based visualization library called Stardust, which provides a familiar API while leveraging GPU’s processing power. Stardust also enables developers to create both 2D and 3D visualizations for diverse display environments using a uniform API. To demonstrate Stardust’s expressiveness and portability, we present five example visualizations and a coding playground for four display environments. We also evaluate its performance by comparing it against the standard HTML5 Canvas, D3, and Vega. Categories and Subject Descriptors (according to ACM CCS): -
Civic Participation and Empowerment Through Visualization
SIGRAD 2015 L. Kjelldahl and C. Peters (Editors) Civic Participation and Empowerment through Visualization Samuel Bohmany Department of Computer and Systems Sciences, Stockholm University, Sweden Abstract This article elaborates on the use of data visualization to promote civic participation and democratic engage- ment. The power and potential of data visualization is examined through a brief historical overview and four interconnected themes that provide new opportunities for electronic participation research: data storytelling, in- fographics, data physicalization, and quantified self. The goal is to call attention to this space and encourage a larger community of researchers to explore the possibilities that data visualization can bring. Categories and Subject Descriptors (according to ACM CCS): H.5.2 [Information Interfaces and Presentation]: Screen design—User-centered design 1. Introduction The authors acknowledge that the deliberative approach to civic dialogue is “unduly restrictive, discounting other im- Since the advent of the web in the early 1990s, prospects portant ways of making, receiving, and contesting public of electronic democracy have been viewed as heralding in claims”. They therefore encourage researchers in the field to a new era of political participation and civic engagement. be more open to a wider range of practices and technologies However, empirical studies suggest most initiatives to date and suggest some of the most innovative research is being have failed to live up to expectations despite large invest- done in the area of computer-supported argument mapping ments in research. For instance, Chadwick [Cha08] states and visualization. However, the visualization research they that “the reality of online deliberation, whether judged in are referring to have primarily focused on facilitating large- terms of quantity, its quality, or its impact on political be- scale online deliberation within a conventional rationalistic haviour and policy outcomes, is far removed from the ide- framework. -
Cryptic Inoviruses Revealed As Pervasive in Bacteria and Archaea Across Earth’S Biomes
ARTICLES https://doi.org/10.1038/s41564-019-0510-x Corrected: Author Correction Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth’s biomes Simon Roux 1*, Mart Krupovic 2, Rebecca A. Daly3, Adair L. Borges4, Stephen Nayfach1, Frederik Schulz 1, Allison Sharrar5, Paula B. Matheus Carnevali 5, Jan-Fang Cheng1, Natalia N. Ivanova 1, Joseph Bondy-Denomy4,6, Kelly C. Wrighton3, Tanja Woyke 1, Axel Visel 1, Nikos C. Kyrpides1 and Emiley A. Eloe-Fadrosh 1* Bacteriophages from the Inoviridae family (inoviruses) are characterized by their unique morphology, genome content and infection cycle. One of the most striking features of inoviruses is their ability to establish a chronic infection whereby the viral genome resides within the cell in either an exclusively episomal state or integrated into the host chromosome and virions are continuously released without killing the host. To date, a relatively small number of inovirus isolates have been extensively studied, either for biotechnological applications, such as phage display, or because of their effect on the toxicity of known bacterial pathogens including Vibrio cholerae and Neisseria meningitidis. Here, we show that the current 56 members of the Inoviridae family represent a minute fraction of a highly diverse group of inoviruses. Using a machine learning approach lever- aging a combination of marker gene and genome features, we identified 10,295 inovirus-like sequences from microbial genomes and metagenomes. Collectively, our results call for reclassification of the current Inoviridae family into a viral order including six distinct proposed families associated with nearly all bacterial phyla across virtually every ecosystem. -
Information Graphics Design Challenges and Workflow Management Marco Giardina, University of Neuchâtel, Switzerland, Pablo Medi
Online Journal of Communication and Media Technologies Volume: 3 – Issue: 1 – January - 2013 Information Graphics Design Challenges and Workflow Management Marco Giardina, University of Neuchâtel, Switzerland, Pablo Medina, Sensiel Research, Switzerland Abstract Infographics, though still in its infancy in the digital world, may offer an opportunity for media companies to enhance their business processes and value creation activities. This paper describes research about the influence of infographics production and dissemination on media companies’ workflow management. Drawing on infographics examples from New York Times print and online version, this contribution empirically explores the evolution from static to interactive multimedia infographics, the possibilities and design challenges of this journalistic emerging field and its impact on media companies’ activities in relation to technology changes and media-use patterns. Findings highlight some explorative ideas about the required workflow and journalism activities for a successful inception of infographics into online news dissemination practices of media companies. Conclusions suggest that delivering infographics represents a yet not fully tapped opportunity for media companies, but its successful inception on news production routines requires skilled professionals in audiovisual journalism and revised business models. Keywords: newspapers, visual communication, infographics, digital media technology © Online Journal of Communication and Media Technologies 108 Online Journal of Communication and Media Technologies Volume: 3 – Issue: 1 – January - 2013 During this time of unprecedented change in journalism, media practitioners and scholars find themselves mired in a new debate on the storytelling potential of data visualization narratives. News organization including the New York Times, Washington Post and The Guardian are at the fore of innovation and experimentation and regularly incorporate dynamic graphics into their journalism products (Segel, 2011). -
Network Visualization Design Using Prefuse Visualization Framework
Air Force Institute of Technology AFIT Scholar Theses and Dissertations Student Graduate Works 3-2008 Network Visualization Design using Prefuse Visualization Framework John Mark Belue Follow this and additional works at: https://scholar.afit.edu/etd Part of the Digital Communications and Networking Commons Recommended Citation Belue, John Mark, "Network Visualization Design using Prefuse Visualization Framework" (2008). Theses and Dissertations. 2745. https://scholar.afit.edu/etd/2745 This Thesis is brought to you for free and open access by the Student Graduate Works at AFIT Scholar. It has been accepted for inclusion in Theses and Dissertations by an authorized administrator of AFIT Scholar. For more information, please contact [email protected]. Network Visualization Design using Prefuse Visualization Toolkit THESIS J. Mark Belue, Captain, USAF AFIT/GCS/ENG/08-03 DEPARTMENT OF THE AIR FORCE AIR UNIVERSITY AIR FORCE INSTITUTE OF TECHNOLOGY Wright-Patterson Air Force Base, Ohio APPROVED FOR PUBLIC RELEASE; DISTRIBUTION UNLIMITED. The views expressed in this thesis are those of the author and do not reflect the o±cial policy of the United States Air Force, Department of Defense, or the United States Government. AFIT/GCS/ENG/08-03 Network Visualization Design using Prefuse Visualization Toolkit THESIS Presented to the Faculty Department of Electrical and Computer Engineering Graduate School of Engineering and Management Air Force Institute of Technology Air University Air Education and Training Command In Partial Ful¯llment of the Requirements for the Degree of Master of Science (Computer Science) J. Mark Belue, BS Captain, USAF March 2008 APPROVED FOR PUBLIC RELEASE; DISTRIBUTION UNLIMITED. AFIT/GCS/ENG/08-03 Network Visualization Design using Prefuse Visualization Toolkit J. -
CDC: Java Platform Technology for Connected Devices
CDC: JAVA™ PLATFORM TECHNOLOGY FOR CONNECTED DEVICES Java™ Platform, Micro Edition White Paper June 2005 2 Table of Contents Sun Microsystems, Inc. Table of Contents Introduction . 3 Enterprise Mobility . 4 Connected Devices in Transition . 5 Connected Devices Today . 5 What Users Want . 5 What Developers Want . 6 What Service Providers Want . 6 What Enterprises Want . 6 Java Technology Leads the Way . 7 From Java Specification Requests… . 7 …to Reference Implementations . 8 …to Technology Compatibility Kits . 8 Java Platform, Micro Edition Technologies . 9 Configurations . 9 CDC . 10 CLDC . 10 Profiles . 11 Optional Packages . 11 A CDC Java Runtime Environment . 12 CDC Technical Overview . 13 CDC Class Library . 13 CDC HotSpot™ Implementation . 13 CDC API Overview . 13 Application Models . 15 Standalone Applications . 16 Managed Applications: Applets . 16 Managed Applications: Xlets . 17 CLDC Compatibility . 18 GUI Options and Tradeoffs . 19 AWT . 19 Lightweight Components . 20 Alternate GUI Interfaces . 20 AGUI Optional Package . 20 Security . 21 Developer Tool Support . 22 3 Introduction Sun Microsystems, Inc. Chapter 1 Introduction From a developer’s perspective, the APIs for desktop PCs and enterprise systems have been a daunting combination of complexity and confusion. Over the last 10 years, Java™ technology has helped simplify and tame this world for the benefit of everyone. Developers have benefited by seeing their skills become applicable to more systems. Users have benefited from consistent interfaces across different platforms. And systems vendors have benefited by reducing and focusing their R&D investments while attracting more developers. For desktop and enterprise systems, “Write Once, Run Anywhere”™ has been a success. But if the complexities of the desktop and enterprise world seem, well, complex, then the connected device world is even scarier. -
Data Visualization by Nils Gehlenborg
Data Visualization Nils Gehlenborg ([email protected]) Center for Biomedical Informatics / Harvard Medical School Cancer Program / Broad Institute of MIT and Harvard ISMB/ECCB 2011 http://www.biovis.net Flyers at ISCB booth! Data Visualization / ISMB/ECCB 2011 / Nils Gehlenborg A good sketch is better than a long speech. Napoleon Bonaparte Data Visualization / ISMB/ECCB 2011 / Nils Gehlenborg Minard 1869 Napoleon’s March on Moscow Data Visualization / ISMB/ECCB 2011 / Nils Gehlenborg 4 I believe when I see it. Unknown Data Visualization / ISMB/ECCB 2011 / Nils Gehlenborg Anscombe 1973, The American Statistician Anscombe’s Quartet mean(X) = 9, var(X) = 11, mean(Y) = 7.5, var(Y) = 4.12, cor(X,Y) = 0.816, linear regression line Y = 3 + 0.5*X Data Visualization / ISMB/ECCB 2011 / Nils Gehlenborg 6 Anscombe 1973, The American Statistician Anscombe’s Quartet Data Visualization / ISMB/ECCB 2011 / Nils Gehlenborg 7 Exploration: Hypothesis Generation trends gaps outliers clusters - A large data set is given and the goal is to learn something about it. - Visualization is employed to perform pattern detection using the human visual system. - The goal is to generate hypotheses that can be tested with statistical methods or follow-up experiments. Data Visualization / ISMB/ECCB 2011 / Nils Gehlenborg 8 Visualization Use Cases Presentation Confirmation Exploration Data Visualization / ISMB/ECCB 2011 / Nils Gehlenborg 9 Definition The use of computer-supported, interactive, visual representations of data to amplify cognition. Stu Card, Jock Mackinlay & Ben Shneiderman Computer-based visualization systems provide visual representations of datasets intended to help people carry out some task more effectively.effectively. -
Transcriptome Networks Identify Mechanisms of Viral and Nonviral Asthma Exacerbations in Children
RESOURCE https://doi.org/10.1038/s41590-019-0347-8 Transcriptome networks identify mechanisms of viral and nonviral asthma exacerbations in children Matthew C. Altman 1,2*, Michelle A. Gill3, Elizabeth Whalen2, Denise C. Babineau4, Baomei Shao3, Andrew H. Liu5, Brett Jepson4, Rebecca S. Gruchalla3, George T. O’Connor6, Jacqueline A. Pongracic7, Carolyn M. Kercsmar8, Gurjit K. Khurana Hershey8, Edward M. Zoratti9, Christine C. Johnson9, Stephen J. Teach10, Meyer Kattan11, Leonard B. Bacharier12, Avraham Beigelman12, Steve M. Sigelman13, Scott Presnell 2, James E. Gern14, Peter J. Gergen13, Lisa M. Wheatley13, Alkis Togias13, William W. Busse14 and Daniel J. Jackson14 Respiratory infections are common precursors to asthma exacerbations in children, but molecular immune responses that determine whether and how an infection causes an exacerbation are poorly understood. By using systems-scale network analy- sis, we identify repertoires of cellular transcriptional pathways that lead to and underlie distinct patterns of asthma exacerba- tion. Specifically, in both virus-associated and nonviral exacerbations, we demonstrate a set of core exacerbation modules, among which epithelial-associated SMAD3 signaling is upregulated and lymphocyte response pathways are downregulated early in exacerbation, followed by later upregulation of effector pathways including epidermal growth factor receptor signaling, extracellular matrix production, mucus hypersecretion, and eosinophil activation. We show an additional set of multiple inflam- matory cell pathways involved in virus-associated exacerbations, in contrast to squamous cell pathways associated with nonvi- ral exacerbations. Our work introduces an in vivo molecular platform to investigate, in a clinical setting, both the mechanisms of disease pathogenesis and therapeutic targets to modify exacerbations. xacerbations are the primary cause of morbidity and mortality Respiratory epithelial inflammation, in particular IL-33 signaling, in children with asthma and occur despite current treatments. -
100% Pure Java Cookbook Use of Native Code
100% Pure Java Cookbook Guidelines for achieving the 100% Pure Java Standard Revision 4.0 Sun Microsystems, Inc. 901 San Antonio Road Palo Alto, California 94303 USA Copyrights 2000 Sun Microsystems, Inc. All rights reserved. 901 San Antonio Road, Palo Alto, California 94043, U.S.A. This product and related documentation are protected by copyright and distributed under licenses restricting its use, copying, distribution, and decompilation. No part of this product or related documentation may be reproduced in any form by any means without prior written authorization of Sun and its licensors, if any. Restricted Rights Legend Use, duplication, or disclosure by the United States Government is subject to the restrictions set forth in DFARS 252.227-7013 (c)(1)(ii) and FAR 52.227-19. The product described in this manual may be protected by one or more U.S. patents, foreign patents, or pending applications. Trademarks Sun, the Sun logo, Sun Microsystems, Java, Java Compatible, 100% Pure Java, JavaStar, JavaPureCheck, JavaBeans, Java 2D, Solaris,Write Once, Run Anywhere, JDK, Java Development Kit Standard Edition, JDBC, JavaSpin, HotJava, The Network Is The Computer, and JavaStation are trademarks or registered trademarks of Sun Microsystems, Inc. in the U.S. and certain other countries. UNIX is a registered trademark in the United States and other countries, exclusively licensed through X/Open Company, Ltd. All other product names mentioned herein are the trademarks of their respective owners. Netscape and Netscape Navigator are trademarks of Netscape Communications Corporation in the United States and other countries. THIS PUBLICATION IS PROVIDED “AS IS” WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESS OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, OR NON-INFRINGEMENT. -
Java for Engineers and Scientists
Java for engineers and scientists by Meera Joseph, University of Johannesburg Java has revolutionised software development in the IT fi eld for many years. This article which takes a tutorial approach and object reusability would benefi t scientists and engineers with some programming experience. Engineering, science and creative programming require a lot of /* Calculating and displaying the fi nal velocity */ imagination, analysis and computation. With top-down design for ( double mi=20000.0; mi<31000.0; mi=mi+1000.0 ) methodology and easy introduction to simple GUI for inputs and outputs { Java is used from cell phones to smart cards. Unlike C++ and Excel, Java double fi nvel = Math.fl oor(vt + vrel*(Math.log(mi/mf))); can create good graphical user interfaces with less lines of code. The JOptionPane.showMessageDialog(null,”Java for engineers and fact is use of Java technology in the engineering and scientifi c fi eld has Scientists\n”+ become unavoidable. ”\nTSIOLKOVSKII’S EQUATION\n”+ ”\nRocket initial velocity\t R”+ vt + “m/s” + Baby steps in Java programming ”\nGas relative velocity\t “ + vrel + “m/s” + ”\nRocket fi nal mass\t “ + mf + “kg”+”\nRocket initial mass\t “ + mi + Java is an object-oriented portable programming language and is a ”kg”+”\n\nRocket fi nal velocity “ consequence of a research project funded by Sun Microsystems and +fi nvel+ “m/s”,”Tsiolkovskii’s Equation”, developed in a C++ based language named Oak in 1991. Sun later JOptionPane.INFORMATION_MESSAGE); renamed it as Java. Java programs consist of classes which include } methods. However programmers use existing classes from Java class } libraries (Java API) or create their own. -
Divergent Brain Gene Expression Patterns Associate with Distinct Cell‑Specifc Tau Neuropathology Traits in Progressive Supranuclear Palsy
Acta Neuropathologica https://doi.org/10.1007/s00401-018-1900-5 ORIGINAL PAPER Divergent brain gene expression patterns associate with distinct cell‑specifc tau neuropathology traits in progressive supranuclear palsy Mariet Allen1 · Xue Wang2 · Daniel J. Serie2 · Samantha L. Strickland1 · Jeremy D. Burgess1 · Shunsuke Koga1 · Curtis S. Younkin3 · Thuy T. Nguyen1 · Kimberly G. Malphrus1 · Sarah J. Lincoln1 · Melissa Alamprese4 · Kuixi Zhu5 · Rui Chang5,6 · Minerva M. Carrasquillo1 · Naomi Kouri1 · Melissa E. Murray1 · Joseph S. Reddy2 · Cory Funk7 · Nathan D. Price7 · Todd E. Golde8 · Steven G. Younkin1 · Yan W. Asmann2 · Julia E. Crook2 · Dennis W. Dickson1 · Nilüfer Ertekin‑Taner1,9 Received: 14 December 2017 / Revised: 26 July 2018 / Accepted: 15 August 2018 © The Author(s) 2018 Abstract Progressive supranuclear palsy (PSP) is a neurodegenerative parkinsonian disorder characterized by tau pathology in neurons and glial cells. Transcriptional regulation has been implicated as a potential mechanism in conferring disease risk and neu- ropathology for some PSP genetic risk variants. However, the role of transcriptional changes as potential drivers of distinct cell-specifc tau lesions has not been explored. In this study, we integrated brain gene expression measurements, quantita- tive neuropathology traits and genome-wide genotypes from 268 autopsy-confrmed PSP patients to identify transcriptional associations with unique cell-specifc tau pathologies. We provide individual transcript and transcriptional network associa- tions for quantitative oligodendroglial (coiled bodies = CB), neuronal (neurofbrillary tangles = NFT), astrocytic (tufted astrocytes = TA) tau pathology, and tau threads and genomic annotations of these fndings. We identifed divergent patterns of transcriptional associations for the distinct tau lesions, with the neuronal and astrocytic neuropathologies being the most diferent. -
Data-Driven Guides: Supporting Expressive Design for Information Graphics
Data-Driven Guides: Supporting Expressive Design for Information Graphics Nam Wook Kim, Eston Schweickart, Zhicheng Liu, Mira Dontcheva, Wilmot Li, Jovan Popovic, and Hanspeter Pfister 300 240 200 300 240 200 120 80 60 120 80 60 '82est '82est '80 '80 300 '78 '78 '76 '76 '74 '74 1972 1972 240 200 120 80 300 300 60 '82est 240 '80 240 '78 120 '76 200 200 '74 120 80 1972 60 '82est 80 60 '80 '82est '78 '80 '76 '78 '74 '76 1972 '74 1972 Fig. 1: Nigel Holmes’ Monstrous Costs chart, recreated by importing a monster graphic (left) and retargeting the teeth of the monster with DDG (middle). Taking advantage of the data-binding capability of DDG, small multiples are easily created by copying the chart and changing the data for each cloned chart (right). Abstract—In recent years, there is a growing need for communicating complex data in an accessible graphical form. Existing visualization creation tools support automatic visual encoding, but lack flexibility for creating custom design; on the other hand, freeform illustration tools require manual visual encoding, making the design process time-consuming and error-prone. In this paper, we present Data-Driven Guides (DDG), a technique for designing expressive information graphics in a graphic design environment. Instead of being confined by predefined templates or marks, designers can generate guides from data and use the guides to draw, place and measure custom shapes. We provide guides to encode data using three fundamental visual encoding channels: length, area, and position. Users can combine more than one guide to construct complex visual structures and map these structures to data.