Rice Research Studies
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Ecological Differentiation and Incipient Speciation in the Fungal Pathogen Causing
bioRxiv preprint doi: https://doi.org/10.1101/2020.06.02.129296; this version posted June 3, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 ECOLOGICAL DIFFERENTIATION AND INCIPIENT SPECIATION IN THE FUNGAL PATHOGEN CAUSING 2 RICE BLAST 3 Maud THIERRY1,2,3, Joëlle MILAZZO1,2, Henri ADREIT1,2, Sébastien RAVEL1,2,4, Sonia BORRON1, Violaine 4 SELLA3, Renaud IOOS3, Elisabeth FOURNIER1, Didier THARREAU1,2,5, Pierre GLADIEUX1,5 5 1UMR BGPI, Université de Montpellier, INRAE, CIRAD, Institut Agro, F-34398 Montpellier, France 6 2 CIRAD, UMR BGPI, F-34398 Montpellier, France. 7 3ANSES Plant Health Laboratory, Mycology Unit, Domaine de Pixérécourt, Bâtiment E, F-54220 Malzéville, France 8 4 South Green Bioinformatics Platform, Alliance Bioversity-international CIAT, CIRAD, INRAE, IRD, Montpellier, 9 France. 10 [email protected]; [email protected] 11 12 ABSTRACT 13 Natural variation in plant pathogens has an impact on food security and ecosystem health. The rice 14 blast fungus Pyricularia oryzae, which limits rice production in all rice-growing areas, is structured into 15 multiple lineages. Diversification and the maintenance of multiple rice blast lineages have been 16 proposed to be due to separation in different areas and differential adaptation to rice subspecies. 17 However, the precise world distribution of rice blast populations, and the factors controlling their 18 presence and maintenance in the same geographic areas, remain largely unknown. -
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California Rice Production Workshop, v15 Variety Selection and Management Introduction and History Since its beginning in 1912, California’s rice industry limited its produc - tion and marketing largely to a few short and medium grain japonica varieties, developed from stocks originating in Japan and China. These varieties produced good yields of quality rice in the dry, temperate cli - mate of the Sacramento and San Joaquin Valleys. For the grower, the choice of variety to plant was relatively simple because the few varieties available were similar in performance, yield potential and milling qual - ity when properly managed. Included were Colusa, Caloro and Calrose released in 1918, 1921 and 1948, respectively, and Earlirose, a productive, early maturing, proprietary variety, released in 1965 which soon became a popular variety for cold areas and/or late plantings. These were the major rice varieties grown in California until the early 1970’s. Then, the variety picture began to change significantly. A powerful impetus for this was the enactment of California Rice Research Marketing Order that established the California Rice Research Board in 1969. This grower initiative provided significant and regular funding to hasten development and release of new varieties. The medium grain variety CS-M3 was released in 1970 and the short grain variety CS-S4 in 1971, from rice hybridizations made in 1946 and 1957 at the Rice Experiment Station (RES) at Biggs, CA. CS-M3 gained wide acceptance and competed with the older Calrose for acreage. But, CS-S4, though an improvement over Caloro, was not widely grown because of its suscep - Publicly devel - tibility to low temperature induced sterility. -
Evaluation of Japonica Rice (Oryza Sativa L.) Varieties and Their Improvement in Terms of Stability, Yield and Cooking Quality by Pure-Line Selection in Thailand
ESEARCH ARTICLE R ScienceAsia 46 (2020): 157–168 doi: 10.2306/scienceasia1513-1874.2020.029 Evaluation of japonica rice (Oryza sativa L.) varieties and their improvement in terms of stability, yield and cooking quality by pure-line selection in Thailand Pawat Nakwilaia, Sulaiman Cheabuc, Possawat Narumona, Chatree Saensukb, Siwaret Arikita,b, a,b, Chanate Malumpong ∗ a Department of Agronomy, Faculty of Agriculture at Kamphaeng Saen, Kasetsart University, Nakhon Pathom 73140 Thailand b Rice Science Center & Rice Gene Discovery Unit, Kasetsart University, Nakhon Pathom 73140 Thailand c Faculty of Agriculture, Princess of Naradhiwas University, Narathiwat 96000 Thailand ∗Corresponding author, e-mail: [email protected] Received 3 Aug 2019 Accepted 3 Apr 2020 ABSTRACT: Many companies in Thailand have encouraged farmers, especially those in the northern regions, to cultivate DOA1 and DOA2 japonica rice varieties. Recently, the agronomic traits of DOA1 and DOA2 were altered, affecting yield and cooking quality. Thus, the objectives of this study were to evaluate the agronomic traits and cooking quality of DOA1 and DOA2 and those of exotic japonica varieties in different locations, including the Kamphaeng Saen and Phan districts (WS16). DOA2 was improved by pure-line selection. The results showed that the Phan district was better suited to grow japonica varieties than the Kamphaeng Saen district and that DOA2 produced high grain yields in both locations. Furthermore, DOA2 was selected by the pure-line method in four generations, after which five candidate lines, Tana1 to Tana5, were selected for yield trials. The results of yield trials in three seasons (WS17, DS17/18, WS18) confirmed that Tana1 showed high performance in terms of its agronomic traits and grain yield. -
RICE and GRAINS
RICE and GRAINS RICE is one of the most important foods in the world, supplying as much as half of the daily calories for half of the world’s population. Scientific name: Oryza sativa Categories: short grain, medium grain or long grain o Short grain – has the highest starch content, males the stickiest rice. o Long grain – lighter and tends to remain separate when cooked. Another way that rice is classified is according to the degree of milling that it undergoes. This is what makes a BROWN RICE different than white rice. BROWN RICE – often referred to as whole rice or cargo rice, is the whole grain with only its inedible outer hull removed. Brown rice still retains its nutrient-rich bran and germ. WHITE RICE – is both milled and polished, which removes the bran and germ along with all the nutrients that reside within these important layers. SOME OF THE MOST POPULAR VARIETIES OF RICE IN THIS COUNTRY INLCUDE: ARBORIO – a round grain, starchy white rice, traditionally used to make the Italian dish risotto. BASMATI – an aromatic rice that has a nutlike fragrance, delicate flavor and light texture. SWEET RICE – almost translucent when it is cooked, this very sticky rice is traditionally used to make sushi and mochi. JASMINE – a soft-textured long grain aromatic rice that is available in both brown and white varieties. BHUTANESE RED RICE – grown in the Himalayas, this red colored rice has a nutty, earthy taste. FORBIDDEN RICE – a black colored rice that turns purple upon cooking and has a sweet taste and sticky texture. -
The Rice Crisis: Markets, Policies and Food Security
‘This book, with chapters from many prominent experts, Crisis Rice The presents new evidence from the recent rice price crisis and draws lessons for preventing the next crisis. It is a unique set of references on global food security and the world rice market.’ shenggen Fan, director General, international Food Policy Research institute (iFPRi) ‘This book is a must-read for those who wish to understand the world rice market, trade policies and food security concerns. The Rice Crisis It provides a careful and detailed analysis of the causes and consequences of the 2007 and 2008 global rice crisis. It is written by knowledgeable experts from the key MaRkeTs, PoliCies and Food seCuRiT y rice economy nations.’ Professor eric J. wailes, university of arkansas, usa r-...... he recent escalation of world food prices – particularly for cereals T– prompted mass public indignation and demonstrations in many countries, from the price of tortilla flour in Mexico to that of rice in the Philippines and pasta in Italy. The crisis has important implications for future government trade and food security policies, as countries -3 re-evaluate their reliance on potentially more volatile world markets to augment domestic supplies of staple foods. This book examines how government policies caused and responded to soaring world prices in the particular case of rice, which is the world’s most important source of calories for the poor. Comparable case studies of policy reactions in different countries (principally across Asia, but also including the USA and Africa) provide the understanding necessary to evaluate the impact of trade policy on the food security of poor farmers and consumers. -
添付資料 3 Post-Harvest Losses and Pre-Seeding Treatments of Rice
添付資料 3 Post-harvest losses and Contents pre-seeding treatments of rice 1. Morphology of rice 2. Rice in Myanmar 3. Post-harvest loss 4. Pre-seeding treatments 27 Nov. 2014 5. Weedy rice (red rice) at Tatkon T/S Office Ryoichi Ikeda (JAICAF) Seed and germination 1. Morphology of rice Growth of seedling 1 Growth of seedling 2 93 Leaves Panicle Spikelets Cross section of central part of paddy Structure of rice seed 94 Top 10 countries of 2. Rice in Myanmar Rice area harvested (1,000 ha) Rice production (1,000,000 t) 1 India 43,038 1 China 182.4 2 China 28,880 2 India 134.3 3 Indonesia 11,932 3 Indonesia 55.4 Bangladesh 4 Bangladesh 10,746 4 40.7 5 Thailand 10,334 5 Viet Nam 35.8 6 Viet Nam 7,401 6 Thailand 29.3 7 Myanmar 7,267 7 Myanmar 27.5 8 Philippines 4,193 8 Philippines 14.8 9 Brazil 3,189 9 Brazil 11.6 10 Pakistan 2,542 10 Japan 10.8 13 Japan 1,675 FAOSTAT (Aver. 2001-2009) Distribution of rice crop area (000 ha), by environment, 2004-2006 Distribution of rice area (%) Food supply quantity (kg/capita/yr) Rice area Rainfed Deep Country 2004 2005 2006 2007 Country (000 ha) Irrigated lowland Upland water Asia 135,026 58.6 32.1 6.7 2.6 1 Brunei Darussalam 253.2 262.7 246.7 244.9 Bangladesh 10,657 40 42 7 11 2 Viet Nam 167.8 167.1 164.7 165.6 Cambodia 2,347 16 75 1 8 3 Lao People's D R 160.9 160.6 161.5 162.6 China 29,037 93 5 2 0 India 43,089 53 32 12 3 4 Bangladesh 161.1 156.0 156.3 159.7 Indonesia 11,708 60 25 0 15 5 Myanmar 157.2 156.6 158.5 156.9 Japan 1,698 100 0 0 0 Korea, DPR 583 67 20 13 0 6 Cambodia 145.6 151.4 152.1 152.2 Korea, Rep. -
Phytochemical Profiles of Black, Red, Brown, and White Rice from The
Article pubs.acs.org/JAFC Phytochemical Profiles of Black, Red, Brown, and White Rice from the Camargue Region of France Gema Pereira-Caro,† Gerard Cros,‡ Takao Yokota,¶ and Alan Crozier*,† † Joseph Black Building, School of Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G12 8QQ, United Kingdom ‡ Laboratoire de Pharmacologie, CNRS UMR 5247 and UniversitéMontpellier 1 and 2, Institut des Biomoleculeś Max Mousseron, Facultéde Pharmacie, 15 avenue Charles Flahault, Montpellier 34093 cedex 05, France ¶ Department of Biosciences, Teikyo University, Utsunomiya 320-8551, Japan ABSTRACT: Secondary metabolites in black, red, brown, and white rice grown in the Camargue region of France were investigated using HPLC-PDA-MS2. The main compounds in black rice were anthocyanins (3.5 mg/g), with cyanidin 3-O- glucoside and peonidin 3-O-glucoside predominating, followed by flavones and flavonols (0.5 mg/g) and flavan-3-ols (0.3 mg/g), which comprised monomeric and oligomeric constituents. Significant quantities of γ-oryzanols, including 24-methylenecy- cloartenol, campesterol, cycloartenol, and β-sitosterol ferulates, were also detected along with lower levels of carotenoids (6.5 μg/ g). Red rice was characterized by a high amount of oligomeric procyanidins (0.2 mg/g), which accounted >60% of secondary metabolite content with carotenoids and γ-oryzanol comprising 26.7%, whereas flavones, flavonols and anthocyanins were <9%. Brown and white rice contained lower quantities of phytochemicals, in the form of flavones/flavonols (21−24 μg/g) and γ- oryzanol (12.3−8.2 μg/g), together with trace levels of the carotenoids lutein and zeaxanthin. Neither anthocyanins nor procyanidins were detected in brown and white rice. -
Increases in Genetic Diversity of Weedy Rice Associated with Ambient Temperatures and Limited Gene Flow
biology Article Increases in Genetic Diversity of Weedy Rice Associated with Ambient Temperatures and Limited Gene Flow Hua Kong 1,†, Zhi Wang 2,†, Jing-Yuan Guo 1, Qi-Yu Xia 1, Hui Zhao 1, Yu-Liang Zhang 1, An-Ping Guo 1,* and Bao-Rong Lu 2,* 1 Key Laboratory of Biology and Genetic Resources of Tropical Crops, Hainan Key Laboratory for Biosafety Monitoring and Molecular Breeding in Off-Season Reproduction Regions, Institute of Tropical Bioscience and Biotechnology, CATAS, Haikou 571101, China; [email protected] (H.K.); [email protected] (J.-Y.G.); [email protected] (Q.-Y.X.); [email protected] (H.Z.); [email protected] (Y.-L.Z.) 2 Ministry of Education, Key Laboratory for Biodiversity Science and Ecological Engineering, Department of Ecology and Evolutionary Biology, Fudan University, Songhu Road 2005, Shanghai 200438, China; [email protected] * Correspondence: [email protected] (A.-P.G.); [email protected] (B.-R.L.) † These authors are equally contributed to the work. Simple Summary: Increased genetic diversity in plants is probably associated with greater ambient temperatures. To test this hypothesis, we studied genetic diversity and differentiation of weedy rice populations occurring in the early- and late-season rice cultivation fields in Leizhou of southern China. Data collected from 10-year climatic records showed a higher average temperature in the late rice-cultivation seasons than in the early rice-cultivation seasons. Results obtained based on 27 SSR (simple sequence repeat) loci indicated greater genetic diversity in the late-season weedy rice populations, in addition to the considerable genetic differentiation between the early- and late-season weedy rice populations. -
Ecologically Sustainable Integrated Weed Management in Dry and Irrigated Direct-Seeded Rice
Advances in Plants & Agriculture Research Research Article Open Access Ecologically sustainable integrated weed management in dry and irrigated direct-seeded rice Abstract Volume 8 Issue 4 - 2018 Weeds are one of the major biological constraints in direct seeded rice farmer’s field and cause a substantial rice yield loss owing to greater diversity in weed flora due to alternate Mona Nagargade, MK Singh, V Tyagi wetting and drying. Sometimes more than three flushes of weed infest the direct seeded Department of Agronomy, Banaras Hindu University, India rice (DSR) in whole life cycle of crop. In India, weeds are mainly controlled manually in rice. However, manual weeding is becoming less cost effective because of labour crisis at Correspondence: MK Singh, Department of Agronomy, critical times or increased labour costs. Herbicides are replacing manual weeding at a faster Institute of Agricultural Sciences, Banaras Hindu University, Varanasi -221005, Uttar Pradesh, India, rate in rice as they are easy to use but there are concerns about the sole and repeated use Email [email protected] of herbicides, such as evolution of resistance in weeds, shifts in weed flora, cost of weed management to farmers and concerns about the environment. Therefore, there is an urgent Received: June 17, 2017 | Published: August 01, 2018 need to effectively integrate different aspects of ecological weed management strategies especially preventive measures like stale seedbed technique, summer tillage, precession land leveling, crop rotation and sowing methods, cultural methods like competitive varieties, herbicide resistance varieties, seed rate, crop residues/straw mulching, cover crops and live mulching, brown manuring, water and nutrient management (specially organic amendments), manual and mechanical method, bio-control agent to achieve effective and sustainable weed control in DSR systems. -
Loss of Function at RAE2, a Previously Unidentified EPFL, Is Required for Awnlessness in Cultivated Asian Rice
Loss of function at RAE2, a previously unidentified EPFL, is required for awnlessness in cultivated Asian rice Kanako Bessho-Ueharaa,1, Diane R. Wangb,1, Tomoyuki Furutaa, Anzu Minamia, Keisuke Nagaia, Rico Gamuyaoa, Kenji Asanoa, Rosalyn B. Angeles-Shima, Yoshihiro Shimizua, Madoka Ayanoa, Norio Komedaa, Kazuyuki Doic, Kotaro Miurad, Yosuke Todae, Toshinori Kinoshitae, Satohiro Okudae, Tetsuya Higashiyamae, Mika Nomotof, Yasuomi Tadaf, Hidefumi Shinoharaf, Yoshikatsu Matsubayashif, Anthony Greenbergb, Jianzhong Wug, Hideshi Yasuih, Atsushi Yoshimurah, Hitoshi Moric,2, Susan R. McCouchb,2, and Motoyuki Ashikaria,2 aBioscience and Biotechnology Center, Nagoya University, Furo-cho, Chikusa, Nagoya, Aichi 464-8601, Japan; bSection of Plant Breeding and Genetics, School of Integrated Plant Sciences, Cornell University, Ithaca, NY 14853-1901; cGraduate School of Agriculture, Nagoya University, Furo-cho, Chikusa, Nagoya, Aichi 464-8601, Japan; dFaculty of Biotechnology, Fukui Prefectural University, 4-1-1 Eiheiji-Town, Fukui 910-1195, Japan; eInstitute of Transformative Bio-Molecules, Nagoya University, Furo-cho, Chikusa, Nagoya, Aichi 464-8602, Japan; fDivision of Biological Science, Graduate School of Science, Nagoya University, Furo-cho, Chikusa, Nagoya, Aichi 464-8602, Japan; gNational Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8634, Japan; and hFaculty of Agriculture, Kyushu University, 6-10-1 Hakozaki, Higashi-ku, Fukuoka 812-8581, Japan Edited by Maarten Koornneef, Max Planck Institute for Plant Breeding Research, Cologne, Germany, and approved June 22, 2016 (received for review March 24, 2016) Domestication of crops based on artificial selection has contributed important for habitat expansion and survival of wild rice. Under numerous beneficial traits for agriculture. Wild characteristics such domestication, the awnless phenotype has been selected to facilitate as red pericarp and seed shattering were lost in both Asian (Oryza planting, harvesting, and storage of seeds (17). -
Comparison of Aroma Active and Sulfur Volatiles in Three Fragrant Rice Cultivars Using GC–Olfactometry and GC–PFPD ⇑ Kanjana Mahattanatawee A, , Russell L
Food Chemistry 154 (2014) 1–6 Contents lists available at ScienceDirect Food Chemistry journal homepage: www.elsevier.com/locate/foodchem Comparison of aroma active and sulfur volatiles in three fragrant rice cultivars using GC–Olfactometry and GC–PFPD ⇑ Kanjana Mahattanatawee a, , Russell L. Rouseff b a Department of Food Technology, Faculty of Science, Siam University, 38 Petchkasem Road, Phasi-Charoen, Bangkok 10160, Thailand b Institute of Food and Agricultural Sciences, Citrus Research and Education Center, University of Florida, 700 Experiment Station Road, Lake Alfred, FL 33850, USA article info abstract Article history: Aroma volatiles from three cooked fragrant rice types (Jasmine, Basmati and Jasmati) were characterised Received 13 October 2013 and identified using SPME GC–O, GC–PFPD and confirmed using GC–MS. A total of 26, 23, and 22 aroma Received in revised form 21 December 2013 active volatiles were observed in Jasmine, Basmati and Jasmati cooked rice samples. 2-Acetyl-1-pyrroline Accepted 30 December 2013 was aroma active in all three rice types, but the sulphur-based, cooked rice character impact volatile, Available online 8 January 2014 2-acetyl-2-thiazoline was aroma active only in Jasmine rice. Five additional sulphur volatiles were found to have aroma activity: dimethyl sulphide, 3-methyl-2-butene-1-thiol, 2-methyl-3-furanthiol, dimethyl Keywords: trisulphide, and methional. Other newly-reported aroma active rice volatiles were geranyl acetate, PCA b-damascone, b-damascenone, and A-ionone, contributing nutty, sweet floral attributes to the aroma of Cooked rice Headspace SPME cooked aromatic rice. The first two principal components from the principal component analysis of sulphur volatiles explained 60% of the variance. -
2015 Top 100 Founders Whether It’S in Plant Breeding Or Business, Policy Or Marketing, Sales Or Education, Leadership in the Seed Industry Takes Many Forms
FOUNDERS SERIES PART 6 OF 6 2015 Top 100 Founders Whether it’s in plant breeding or business, policy or marketing, sales or education, leadership in the seed industry takes many forms. Meet the most transformational men and women in the seed industry during the past 100 years. From all across the globe, they shape your world. THESE ARE THE individuals his first batch of okra seeds research stations and farmers’ fields of Mexico that Borlaug who have provided leadership to his neighbors, his com- developed successive generations of wheat varieties with broad during trying times, insight to pany contracts with more and stable disease resistance, broad adaptation to growing con- complex issues, and a com- than 100,000 growers. Since ditions across many degrees of latitude and with exceedingly mitment to something larger then, seed distribution in India high yield potential. These new wheat varieties and improved than self. has grown 40-fold. In 1998, crop management practices transformed agricultural produc- The 100 founders of the he received the World Food tion in Mexico during the 1940s and 1950s and later in Asia and seed industry that we’ve Prize award and invested that Latin America, sparking the Green Revolution. Because of his chosen to represent the money into research pro- achievements and efforts to prevent hunger, famine and misery dramatic changes during the grams for hybrid rice varieties. around the world, it is said that Borlaug has saved more lives past century have all left a than any other person who has ever lived. tremendous mark — be it in Henry Beachell plant breeding, technology, Creator of IR8 Rice Kent Bradford business or the policy arena — Today, most of the rice Launched the Seed Biotechnology Center that impacts the seed indus- grown in the world comes Through workshops and courses, the try.