Phenolic Compounds and Uses in Fruit Growing A,B Melekber SULUSOGLU * Akocaeli University, Arslanbey Agricultural Vocational School, TR-41285, Kocaeli/Turkey
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Metabolomics Reveals the Molecular Mechanisms of Copper Induced
Article Cite This: Environ. Sci. Technol. 2018, 52, 7092−7100 pubs.acs.org/est Metabolomics Reveals the Molecular Mechanisms of Copper Induced Cucumber Leaf (Cucumis sativus) Senescence † ‡ § ∥ ∥ ∥ Lijuan Zhao, Yuxiong Huang, , Kelly Paglia, Arpana Vaniya, Benjamin Wancewicz, ‡ § and Arturo A. Keller*, , † Key Laboratory of Pollution Control and Resource Reuse, School of Environment, Nanjing University, Nanjing, Jiangsu 210023, China ‡ Bren School of Environmental Science & Management, University of California, Santa Barbara, California 93106-5131, United States § University of California, Center for Environmental Implications of Nanotechnology, Santa Barbara, California 93106, United States ∥ UC Davis Genome Center-Metabolomics, University of California Davis, 451 Health Sciences Drive, Davis, California 95616, United States *S Supporting Information ABSTRACT: Excess copper may disturb plant photosynthesis and induce leaf senescence. The underlying toxicity mechanism is not well understood. Here, 3-week-old cucumber plants were foliar exposed to different copper concentrations (10, 100, and 500 mg/L) for a final dose of 0.21, 2.1, and 10 mg/plant, using CuSO4 as the Cu ion source for 7 days, three times per day. Metabolomics quantified 149 primary and 79 secondary metabolites. A number of intermediates of the tricarboxylic acid (TCA) cycle were significantly down-regulated 1.4−2.4 fold, indicating a perturbed carbohy- drate metabolism. Ascorbate and aldarate metabolism and shikimate- phenylpropanoid biosynthesis (antioxidant and defense related pathways) were perturbed by excess copper. These metabolic responses occur even at the lowest copper dose considered although no phenotype changes were observed at this dose. High copper dose resulted in a 2-fold increase in phytol, a degradation product of chlorophyll. -
Secondary Metabolites and Phenylpropanoid Pathway Enzymes
Journal of Photochemistry and Photobiology B: Biology 140 (2014) 332–343 Contents lists available at ScienceDirect Journal of Photochemistry and Photobiology B: Biology journal homepage: www.elsevier.com/locate/jphotobiol Secondary metabolites and phenylpropanoid pathway enzymes as influenced under supplemental ultraviolet-B radiation in Withania somnifera Dunal, an indigenous medicinal plant ⇑ Swabha Takshak, S.B. Agrawal Laboratory of Air Pollution and Global Climate Change, Department of Botany, Banaras Hindu University, Varanasi 221 005, India article info abstract Article history: The present study aims to investigate the effects of supplemental ultraviolet B (3.6 kJ mÀ2 dayÀ1 above Received 28 May 2014 ambient) radiation on secondary metabolites and phenylpropanoid pathway enzymes of Withania Received in revised form 12 August 2014 somnifera under field conditions at 40, 70, and 100 days after transplantation. Secondary metabolites’ Accepted 14 August 2014 (alkaloids, anthocyanins, carotenoids, flavonoids, lignin, phytosterols, saponins, and tannins) concentra- Available online 6 September 2014 tions were analysed at the end of the treatments. Activities of phenylalanine ammonia lyase (PAL), cinnamyl alcohol dehydrogenase (CAD), 4-coumarate-CoA ligase (4CL), chalcone–flavanone isomerase Keywords: (CHI), and dihydroflavonol reductase (DFR) were also determined. In treated plants, secondary metabo- Phenylpropanoid pathway enzymes lite-concentrations generally increased (higher concentrations being recorded in roots compared to Secondary metabolites s-UV-B leaves). Anomalies were recorded for lycopene in roots and phytosterols in leaves (all sampling ages); Withania somnifera b-carotene declined in leaves at third sampling age. s-UV-B-treated plants depicted decrease in withan- olide A content with concomitant increase in withaferin A (two major alkaloids analysed by HPLC) com- pared to their respective controls. -
Dietary Plant Polyphenols: Effects of Food Processing on Their Content and Bioavailability
molecules Review Dietary Plant Polyphenols: Effects of Food Processing on Their Content and Bioavailability Leila Arfaoui Department of Clinical Nutrition, Faculty of Applied Medical Sciences, King Abdulaziz University, P.O. Box 80324, Jeddah 21589, Saudi Arabia; [email protected]; Tel.: +966-0126401000 (ext. 41612) Abstract: Dietary plant polyphenols are natural bioactive compounds that are increasingly attracting the attention of food scientists and nutritionists because of their nutraceutical properties. In fact, many studies have shown that polyphenol-rich diets have protective effects against most chronic diseases. However, these health benefits are strongly related to both polyphenol content and bioavailability, which in turn depend on their origin, food matrix, processing, digestion, and cellular metabolism. Although most fruits and vegetables are valuable sources of polyphenols, they are not usually con- sumed raw. Instead, they go through some processing steps, either industrially or domestically (e.g., cooling, heating, drying, fermentation, etc.), that affect their content, bioaccessibility, and bioavail- ability. This review summarizes the status of knowledge on the possible (positive or negative) effects of commonly used food-processing techniques on phenolic compound content and bioavailability in fruits and vegetables. These effects depend on the plant type and applied processing parameters (type, duration, media, and intensity). This review attempts to shed light on the importance of more comprehensive dietary guidelines that consider the recommendations of processing parameters to take full advantage of phenolic compounds toward healthier foods. Citation: Arfaoui, L. Dietary Plant Keywords: plant polyphenols; food processing; phenolic content; bioavailability; bioaccessibility Polyphenols: Effects of Food Processing on Their Content and Bioavailability. Molecules 2021, 26, 2959. -
Flavonoid-Modifying Capabilities of the Human Gut Microbiome—An in Silico Study
nutrients Article Flavonoid-Modifying Capabilities of the Human Gut Microbiome—An In Silico Study Tobias Goris 1,* , Rafael R. C. Cuadrat 2 and Annett Braune 1 1 Research Group Intestinal Microbiology, Department of Molecular Toxicology, German Institute of Human Nutrition Potsdam-Rehbruecke, Arthur-Scheunert-Allee 114-116, 14558 Nuthetal, Germany; [email protected] 2 Department of Molecular Epidemiology, German Institute of Human Nutrition Potsdam-Rehbruecke, Arthur-Scheunert-Allee 114-116, 14558 Nuthetal, Germany; [email protected] * Correspondence: [email protected] Abstract: Flavonoids are a major group of dietary plant polyphenols and have a positive health impact, but their modification and degradation in the human gut is still widely unknown. Due to the rise of metagenome data of the human gut microbiome and the assembly of hundreds of thousands of bacterial metagenome-assembled genomes (MAGs), large-scale screening for potential flavonoid-modifying enzymes of human gut bacteria is now feasible. With sequences of characterized flavonoid-transforming enzymes as queries, the Unified Human Gastrointestinal Protein catalog was analyzed and genes encoding putative flavonoid-modifying enzymes were quantified. The results revealed that flavonoid-modifying enzymes are often encoded in gut bacteria hitherto not considered to modify flavonoids. The enzymes for the physiologically important daidzein-to-equol conversion, well studied in Slackia isoflavoniconvertens, were encoded only to a minor extent in Slackia MAGs, but were more abundant in Adlercreutzia equolifaciens and an uncharacterized Eggerthellaceae species. In addition, enzymes with a sequence identity of about 35% were encoded in highly abundant MAGs of uncultivated Collinsella species, which suggests a hitherto uncharacterized daidzein-to-equol potential in these bacteria. -
Monocyclic Phenolic Acids; Hydroxy- and Polyhydroxybenzoic Acids: Occurrence and Recent Bioactivity Studies
Molecules 2010, 15, 7985-8005; doi:10.3390/molecules15117985 OPEN ACCESS molecules ISSN 1420-3049 www.mdpi.com/journal/molecules Review Monocyclic Phenolic Acids; Hydroxy- and Polyhydroxybenzoic Acids: Occurrence and Recent Bioactivity Studies Shahriar Khadem * and Robin J. Marles Natural Health Products Directorate, Health Products and Food Branch, Health Canada, 2936 Baseline Road, Ottawa, Ontario K1A 0K9, Canada * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +1-613-954-7526; Fax: +1-613-954-1617. Received: 19 October 2010; in revised form: 3 November 2010 / Accepted: 4 November 2010 / Published: 8 November 2010 Abstract: Among the wide diversity of naturally occurring phenolic acids, at least 30 hydroxy- and polyhydroxybenzoic acids have been reported in the last 10 years to have biological activities. The chemical structures, natural occurrence throughout the plant, algal, bacterial, fungal and animal kingdoms, and recently described bioactivities of these phenolic and polyphenolic acids are reviewed to illustrate their wide distribution, biological and ecological importance, and potential as new leads for the development of pharmaceutical and agricultural products to improve human health and nutrition. Keywords: polyphenols; phenolic acids; hydroxybenzoic acids; natural occurrence; bioactivities 1. Introduction Phenolic compounds exist in most plant tissues as secondary metabolites, i.e. they are not essential for growth, development or reproduction but may play roles as antioxidants and in interactions between the plant and its biological environment. Phenolics are also important components of the human diet due to their potential antioxidant activity [1], their capacity to diminish oxidative stress- induced tissue damage resulted from chronic diseases [2], and their potentially important properties such as anticancer activities [3-5]. -
United States Patent (10) Patent No.: US 8,969,514 B2 Shailubhai (45) Date of Patent: Mar
USOO896.9514B2 (12) United States Patent (10) Patent No.: US 8,969,514 B2 Shailubhai (45) Date of Patent: Mar. 3, 2015 (54) AGONISTS OF GUANYLATECYCLASE 5,879.656 A 3, 1999 Waldman USEFUL FOR THE TREATMENT OF 36; A 6. 3: Watts tal HYPERCHOLESTEROLEMIA, 6,060,037- W - A 5, 2000 Waldmlegand et al. ATHEROSCLEROSIS, CORONARY HEART 6,235,782 B1 5/2001 NEW et al. DISEASE, GALLSTONE, OBESITY AND 7,041,786 B2 * 5/2006 Shailubhai et al. ........... 530.317 OTHER CARDOVASCULAR DISEASES 2002fOO78683 A1 6/2002 Katayama et al. 2002/O12817.6 A1 9/2002 Forssmann et al. (75) Inventor: Kunwar Shailubhai, Audubon, PA (US) 2003,2002/0143015 OO73628 A1 10/20024, 2003 ShaubhaiFryburg et al. 2005, OO16244 A1 1/2005 H 11 (73) Assignee: Synergy Pharmaceuticals, Inc., New 2005, OO32684 A1 2/2005 Syer York, NY (US) 2005/0267.197 A1 12/2005 Berlin 2006, OO86653 A1 4, 2006 St. Germain (*) Notice: Subject to any disclaimer, the term of this 299;s: A. 299; NS et al. patent is extended or adjusted under 35 2008/0137318 A1 6/2008 Rangarajetal.O U.S.C. 154(b) by 742 days. 2008. O151257 A1 6/2008 Yasuda et al. 2012/O196797 A1 8, 2012 Currie et al. (21) Appl. No.: 12/630,654 FOREIGN PATENT DOCUMENTS (22) Filed: Dec. 3, 2009 DE 19744O27 4f1999 (65) Prior Publication Data WO WO-8805306 T 1988 WO WO99,26567 A1 6, 1999 US 2010/O152118A1 Jun. 17, 2010 WO WO-0 125266 A1 4, 2001 WO WO-02062369 A2 8, 2002 Related U.S. -
Utilizing UVPD Fragmentation for Plant Molecules: Phenylpropanoids
Utilizing UVPD Fragmentation for Plant Molecules: Phenylpropanoids Romain Huguet1, Tim Stratton1, Seema Sharma1, Christopher Mullen1, Jesse Canterbury1, and Vlad Zabrouskov1 1Thermo Fisher Scientific, San Jose, California, USA RESULTS A significant difference between the fragmentation approaches arises from the means in which UVPD Laser In addition to early observation of typically higher energy fragmentation channels in the UVPD, an ABSTRACT they initiate fragmentation. In HCD, energy is imparted by the initial injection of the ions into the increase in fragment ions arising from ionization of the aromatic rings or the conjugated double For this work, we used a Nd:YAG (neodymium doped yttrium aluminum garnet) laser. This is an collision cell and collisions with a relatively static gas. A greater voltage offset gives rise to more Purpose: Investigate the potential use of UVPD to provide unique and potentially diagnostic Compound Structure and UV Absorption bond chalconoids was observed (Figure 6). While ionization was largely the result of the ketone or optically pumped laser that typically emits in the infrared range (>1000nm). When operated in a energetic collisions. The energy is internally distributed with bonds breaking to form fragment ions fragmentation information for structure determination of small molecules, specifically alcohol functions present on the compounds, specific absorption of photons generated unique pulsed Q-switching mode, where the laser energy is released in a pulse when reaching a threshold, which may also undergo subsequent fragmentation events generating several generations of phenylpropanoids and chalconoids. fragmentation. Several of these fragment ions were not observed in HCD at any energy level frequency doubling of the pulses can be used to obtain shorter wavelengths. -
RNA-Sequencing Analysis Reveals Betalains Metabolism in the Leaf of Amaranthus Tricolor L
RESEARCH ARTICLE RNA-sequencing analysis reveals betalains metabolism in the leaf of Amaranthus tricolor L. Shengcai Liu1☯, Xueli Zheng1☯, Junfei Pan1, Liyun Peng1, Chunzhen Cheng1, Xiao Wang1, 1 1 1 1,2 1 Chunli Zhao , Zihao Zhang , Yuling Lin , Xu XuHan *, Zhongxiong LaiID * 1 Institute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China, 2 Institut de la Recherche Interdisciplinaire de Toulouse, Toulouse, France ☯ These authors contributed equally to this work. * [email protected](ZL); [email protected] (XXH) a1111111111 a1111111111 a1111111111 a1111111111 Abstract a1111111111 Amaranth plants contain large amounts of betalains, including betaxanthins and betacya- nins. Amaranthin is a betacyanin, and its molecular structure and associated metabolic pathway differ from those of betanin in beet plants. The chlorophyll, carotenoid, betalain, and flavonoid contents in amaranth leaves were analyzed. The abundance of betalain, beta- OPEN ACCESS cyanin, and betaxanthin was 2±5-fold higher in the red leaf sectors than in the green leaf Citation: Liu S, Zheng X, Pan J, Peng L, Cheng C, sectors. Moreover, a transcriptome database was constructed for the red and green sectors Wang X, et al. (2019) RNA-sequencing analysis of amaranth leaves harvested from 30-day-old seedlings. 22 unigenes were selected to ana- reveals betalains metabolism in the leaf of Amaranthus tricolor L.. PLoS ONE 14(4): lyze the expression profiles in the two leaf sectors. The RNA-sequencing data indicated that e0216001. https://doi.org/10.1371/journal. many unigenes are involved in betalain metabolic pathways. The potential relationships pone.0216001 between diverse metabolic pathways and betalain metabolism were analyzed. -
Combinatorial Biosynthesis of Non-Bacterial and Unnatural Flavonoids, Stilbenoids and Curcuminoids by Microorganisms Sueharu Horinouchi
J. Antibiot. 61(12): 709–728, 2008 THE JOURNAL OF REVIEW ARTICLE ANTIBIOTICS Combinatorial Biosynthesis of Non-bacterial and Unnatural Flavonoids, Stilbenoids and Curcuminoids by Microorganisms Sueharu Horinouchi Received: August 1, 2008 / Accepted: October 14, 2008 © Japan Antibiotics Research Association Abstract One of the approaches of combinatorial biosynthesis is combining genes from different organisms and designing a new set of gene clusters to produce bioactive compounds, leading to diversification of both chemical and natural product libraries. This makes efficient use of the potential of the host organisms, especially when microorganisms are used. An Escherichia coli system, in which artificial biosynthetic pathways for production of plant-specific medicinal polyketides, such as flavonoids, stilbenoids, isoflavonoids, and curcuminoids, are assembled, has been designed and expressed. Starting with amino acids tyrosine and phenylalanine as substrates, this system yields naringenin, resveratrol, genistein, and curcumin, for example, all of which are beneficial to human health because of their wide variety of biological activities. Supplementation of unnatural carboxylic acids to the recombinant E. coli cells carrying the artificial pathways by precursor-directed biosynthesis results in production of unnatural compounds. Addition of decorating or modification enzymes to the artificial pathway leads to production of natural and unnatural flavonols, flavones, and methylated resveratrols. This microbial system is promising for construction of larger libraries by employing other polyketide synthases and decorating enzymes of various origins. In addition, the concept of building and expressing artificial biosynthetic pathways for production of non-bacterial and unnatural compounds in microorganisms should be successfully applied to production of not only plant-specific polyketides but also many other useful compound classes. -
Identification of Compounds That Rescue Otic and Myelination
RESEARCH ARTICLE Identification of compounds that rescue otic and myelination defects in the zebrafish adgrg6 (gpr126) mutant Elvira Diamantopoulou1†, Sarah Baxendale1†, Antonio de la Vega de Leo´ n2, Anzar Asad1, Celia J Holdsworth1, Leila Abbas1, Valerie J Gillet2, Giselle R Wiggin3, Tanya T Whitfield1* 1Bateson Centre and Department of Biomedical Science, University of Sheffield, Sheffield, United Kingdom; 2Information School, University of Sheffield, Sheffield, United Kingdom; 3Sosei Heptares, Cambridge, United Kingdom Abstract Adgrg6 (Gpr126) is an adhesion class G protein-coupled receptor with a conserved role in myelination of the peripheral nervous system. In the zebrafish, mutation of adgrg6 also results in defects in the inner ear: otic tissue fails to down-regulate versican gene expression and morphogenesis is disrupted. We have designed a whole-animal screen that tests for rescue of both up- and down-regulated gene expression in mutant embryos, together with analysis of weak and strong alleles. From a screen of 3120 structurally diverse compounds, we have identified 68 that reduce versican b expression in the adgrg6 mutant ear, 41 of which also restore myelin basic protein gene expression in Schwann cells of mutant embryos. Nineteen compounds unable to rescue a strong adgrg6 allele provide candidates for molecules that may interact directly with the Adgrg6 receptor. Our pipeline provides a powerful approach for identifying compounds that modulate GPCR activity, with potential impact for future drug design. DOI: https://doi.org/10.7554/eLife.44889.001 *For correspondence: [email protected] †These authors contributed Introduction equally to this work Adgrg6 (Gpr126) is an adhesion (B2) class G protein-coupled receptor (aGPCR) with conserved roles in myelination of the vertebrate peripheral nervous system (PNS) (reviewed in Langenhan et al., Competing interest: See 2016; Patra et al., 2014). -
Plant Phenolics: Bioavailability As a Key Determinant of Their Potential Health-Promoting Applications
antioxidants Review Plant Phenolics: Bioavailability as a Key Determinant of Their Potential Health-Promoting Applications Patricia Cosme , Ana B. Rodríguez, Javier Espino * and María Garrido * Neuroimmunophysiology and Chrononutrition Research Group, Department of Physiology, Faculty of Science, University of Extremadura, 06006 Badajoz, Spain; [email protected] (P.C.); [email protected] (A.B.R.) * Correspondence: [email protected] (J.E.); [email protected] (M.G.); Tel.: +34-92-428-9796 (J.E. & M.G.) Received: 22 October 2020; Accepted: 7 December 2020; Published: 12 December 2020 Abstract: Phenolic compounds are secondary metabolites widely spread throughout the plant kingdom that can be categorized as flavonoids and non-flavonoids. Interest in phenolic compounds has dramatically increased during the last decade due to their biological effects and promising therapeutic applications. In this review, we discuss the importance of phenolic compounds’ bioavailability to accomplish their physiological functions, and highlight main factors affecting such parameter throughout metabolism of phenolics, from absorption to excretion. Besides, we give an updated overview of the health benefits of phenolic compounds, which are mainly linked to both their direct (e.g., free-radical scavenging ability) and indirect (e.g., by stimulating activity of antioxidant enzymes) antioxidant properties. Such antioxidant actions reportedly help them to prevent chronic and oxidative stress-related disorders such as cancer, cardiovascular and neurodegenerative diseases, among others. Last, we comment on development of cutting-edge delivery systems intended to improve bioavailability and enhance stability of phenolic compounds in the human body. Keywords: antioxidant activity; bioavailability; flavonoids; health benefits; phenolic compounds 1. Introduction Phenolic compounds are secondary metabolites widely spread throughout the plant kingdom with around 8000 different phenolic structures [1]. -
Molecular Structure and Physiological Function of Chloride Channels
Physiol Rev 82: 503–568, 2002; 10.1152/physrev.00029.2001. Molecular Structure and Physiological Function of Chloride Channels THOMAS J. JENTSCH, VALENTIN STEIN, FRANK WEINREICH, AND ANSELM A. ZDEBIK Zentrum fu¨r Molekulare Neurobiologie Hamburg, Universita¨t Hamburg, Hamburg, Germany I. Introduction 504 II. Cellular Functions of Chloride Channels 506 A. Plasma membrane channels 506 B. Channels of intracellular organelles 507 III. The CLC Chloride Channel Family 508 A. General features of CLC channels 510 B. ClC-0: the Torpedo electric organ ClϪ channel 516 C. ClC-1: a muscle-specific ClϪ channel that stabilizes the membrane voltage 517 D. ClC-2: a broadly expressed channel activated by hyperpolarization, cell swelling, and acidic pH 519 Ϫ E. ClC-K/barttin channels: Cl channels involved in transepithelial transport in the kidney and the Downloaded from inner ear 523 F. ClC-3: an intracellular ClϪ channel that is present in endosomes and synaptic vesicles 525 G. ClC-4: a poorly characterized vesicular channel 527 H. ClC-5: an endosomal channel involved in renal endocytosis 527 I. ClC-6: an intracellular channel of unknown function 531 J. ClC-7: a lysosomal ClϪ channel whose disruption leads to osteopetrosis in mice and humans 531 K. CLC proteins in model organisms 532 on October 3, 2014 IV. Cystic Fibrosis Transmembrane Conductance Regulator: a cAMP-Activated Chloride Channel 533 A. Structure and function of the CFTR ClϪ channel 533 B. Cellular regulation of CFTR activity 534 C. CFTR as a regulator of other ion channels 534 V. Swelling-Activated Chloride Channels 535 A. Biophysical characteristics of swelling-activated ClϪ currents 536 B.