pathogens Review Application of Microbiome Management in Therapy for Clostridioides difficile Infections: From Fecal Microbiota Transplantation to Probiotics to Microbiota-Preserving Antimicrobial Agents Chun-Wei Chiu 1, Pei-Jane Tsai 2, Ching-Chi Lee 3,4 , Wen-Chien Ko 4,5,* and Yuan-Pin Hung 1,4,5,* 1 Department of Internal Medicine, Tainan Hospital, Ministry of Health and Welfare, Tainan 700, Taiwan;
[email protected] 2 Department of Medical Laboratory Science and Biotechnology, National Cheng Kung University, Medical College, Tainan 704, Taiwan;
[email protected] 3 Clinical Medicine Research Center, National Cheng Kung University Hospital, College of Medicine, National Cheng Kung University, Tainan 704, Taiwan;
[email protected] 4 Department of Internal Medicine, College of Medicine, National Cheng Kung University Hospital, Tainan 704, Taiwan 5 Department of Medicine, College of Medicine, National Cheng Kung University, Tainan 704, Taiwan * Correspondence:
[email protected] (W.-C.K.);
[email protected] (Y.-P.H.) Abstract: Oral vancomycin and metronidazole, though they are the therapeutic choice for Clostrid- Citation: Chiu, C.-W.; Tsai, P.-J.; Lee, ioides difficile infections (CDIs), also markedly disturb microbiota, leading to a prolonged loss of C.-C.; Ko, W.-C.; Hung, Y.-P. colonization resistance to C. difficile after therapy; as a result, their use is associated with a high Application of Microbiome treatment failure rate and high recurrent rate. An alternative for CDIs therapy contains the delivery Management in Therapy for of beneficial (probiotic) microorganisms into the intestinal tract to restore the microbial balance. Clostridioides difficile Infections: From Fecal Microbiota Transplantation to Recently, mixture regimens containing Lactobacillus species, Saccharomyces boulardii, or Clostridium Probiotics to Microbiota-Preserving butyricum have been extensively studied for the prophylaxis of CDIs.