Loss of Eif4e Phosphorylation Engenders Depression-Like Behaviors Via Selective Mrna Translation

Total Page:16

File Type:pdf, Size:1020Kb

Loss of Eif4e Phosphorylation Engenders Depression-Like Behaviors Via Selective Mrna Translation This Accepted Manuscript has not been copyedited and formatted. The final version may differ from this version. A link to any extended data will be provided when the final version is posted online. Research Articles: Neurobiology of Disease Loss of eIF4E phosphorylation engenders depression-like behaviors via selective mRNA translation Inês Silva Amorim1,2, Sonal Kedia1,2, Stella Kouloulia1,2, Konstanze Simbriger1,2, Ilse Gantois3, Seyed Mehdi Jafarnejad3, Yupeng Li1,2, Agniete Kampaite1,2, Tine Pooters1, Nicola Romanò1 and Christos G. Gkogkas1,2,4 1Centre for Discovery Brain Sciences, EH8 9XD, Edinburgh, Scotland, UK 2The Patrick Wild Centre, EH8 9XD, Edinburgh, Scotland, UK 3Goodman Cancer Research Centre and Biochemistry Department, McGill University, H3A 1A3, Montréal, QC, Canada 4Simons Initiative for the Developing Brain, EH8 9XD, Edinburgh, Scotland, UK DOI: 10.1523/JNEUROSCI.2673-17.2018 Received: 16 September 2017 Revised: 3 December 2017 Accepted: 8 January 2018 Published: 24 January 2018 Author contributions: I.S.A., S. Kedia, S. Kouloulia, S.M.J., N.R., and C.G.G. designed research; I.S.A., S. Kedia, S. Kouloulia, K.S., I.G., S.M.J., Y.L., A.K., N.R., and C.G.G. performed research; I.S.A., S. Kedia, S. Kouloulia, K.S., I.G., S.M.J., A.K., T.P., and C.G.G. analyzed data; N.R. and C.G.G. contributed unpublished reagents/analytic tools; C.G.G. wrote the paper. Conflict of Interest: The authors declare no competing financial interests. This work was supported by grants to CGG: Sir Henry Dale Fellowship from the Wellcome Trust and Royal Society (107687/Z/15/Z), a NARSAD Young Investigator grant from the Brain & Behavior Research Foundation, the RS Macdonald Charitable Trust and the Patrick Wild Centre. We thank M. Laidlaw, C. Wollaston, R. Loureiro and T. Amvrosiadis for technical assistance. Corresponding author: Christos G. Gkogkas, Centre for Discovery Brain Sciences, The Patrick Wild Centre and Simons Initiative for the Developing Brain, Hugh Robson Building, George Square, EH89XD, Edinburgh, UK, [email protected] Cite as: J. Neurosci ; 10.1523/JNEUROSCI.2673-17.2018 Alerts: Sign up at www.jneurosci.org/cgi/alerts to receive customized email alerts when the fully formatted version of this article is published. Accepted manuscripts are peer-reviewed but have not been through the copyediting, formatting, or proofreading process. Copyright © 2018 Silva Amorim et al. This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license, which permits unrestricted use, distribution and reproduction in any medium provided that the original work is properly attributed. 1 Loss of eIF4E phosphorylation engenders depression-like behaviors via selective mRNA 2 translation 3 Abbreviated title: The role of eIF4E phosphorylation in depression 4 5 Inês Silva Amorim1,2*, Sonal Kedia1,2*, Stella Kouloulia1,2*, Konstanze Simbriger1,2*, Ilse 6 Gantois3, Seyed Mehdi Jafarnejad3, Yupeng Li1,2, Agniete Kampaite1,2, Tine Pooters1, Nicola 7 Romanò1, and Christos G. Gkogkas1,2,4. 8 9 1Centre for Discovery Brain Sciences, EH8 9XD, Edinburgh, Scotland, UK 10 2The Patrick Wild Centre, EH8 9XD, Edinburgh, Scotland, UK 11 3Goodman Cancer Research Centre and Biochemistry Department, McGill University, H3A 1A3, Montréal, QC, 12 Canada 13 4Simons Initiative for the Developing Brain, EH8 9XD, Edinburgh, Scotland, UK 14 15 *these authors contributed equally 16 Corresponding author: Christos G. Gkogkas, Centre for Discovery Brain Sciences, The 17 Patrick Wild Centre and Simons Initiative for the Developing Brain, Hugh Robson Building, 18 George Square, EH89XD, Edinburgh, UK, [email protected] 19 20 Pages: (32) 21 22 Figures (7), Tables (2), Multimedia (0) and 3D models (0), Extended Figure (1) 23 24 Number of words for Abstract (217), Introduction (625), and Discussion (1417) 25 26 Conflict of Interest: None declared 27 28 Acknowledgements: This work was supported by grants to CGG: Sir Henry Dale Fellowship 29 from the Wellcome Trust and Royal Society (107687/Z/15/Z), a NARSAD Young 30 Investigator grant from the Brain & Behavior Research Foundation, the RS Macdonald 31 Charitable Trust and the Patrick Wild Centre. We thank M. Laidlaw, C. Wollaston, R. 32 Loureiro and T. Amvrosiadis for technical assistance. 33 1 34 Abstract (217 words) 35 The MAPK/ERK (Mitogen Activated Protein Kinases/Extracellular signal-Regulated 36 Kinases) pathway is a cardinal regulator of synaptic plasticity, learning and memory in the 37 hippocampus. One of major endpoints of this signaling cascade is the 5´ mRNA cap-binding 38 protein eIF4E (eukaryotic Initiation Factor 4E), which is phosphorylated on Ser 209 by MNK 39 (MAPK-interacting protein kinases) and controls mRNA translation. The precise role of 40 phospho-eIF4E in the brain is yet to be determined. Herein, we demonstrate that ablation of 41 eIF4E phosphorylation in male mice (4Eki mice) does not impair long-term spatial or 42 contextual fear memory, or the late phase of long-term potentiation (L-LTP). Using unbiased 43 translational profiling in mouse brain, we show that phospho-eIF4E differentially regulates 44 the translation of a subset of mRNAs linked to inflammation, the extracellular matrix (ECM), 45 pituitary hormones and the serotonin pathway. Consequently, 4Eki male mice display 46 exaggerated inflammatory responses and reduced levels of serotonin, concomitant with 47 depression and anxiety-like behaviors. Remarkably, eIF4E phosphorylation is required for 48 the chronic antidepressant action of the selective serotonin reuptake inhibitor (SSRI) 49 fluoxetine. Finally, we propose a novel phospho-eIF4E-dependent translational control 50 mechanism in the brain, via the GAIT complex (Gamma interferon Activated Inhibitor of 51 Translation). In summary, our work proposes a novel translational control mechanism 52 involved in the regulation of inflammation and depression, which could be exploited to 53 design novel therapeutics. 54 55 Significance Statement (122) 56 We demonstrate that downstream of the Mitogen Activated Protein Kinase (MAPK) 57 pathway, eukaryotic Initiation Factor 4E (eIF4E) Ser209 phosphorylation is not required for 58 classical forms of hippocampal long-term potentiation and memory. We reveal a novel role 59 for eIF4E phosphorylation in inflammatory responses and depression-like behaviors. eIF4E 60 phosphorylation is required for the chronic action of antidepressants such as fluoxetine in 61 mice. These phenotypes are accompanied by selective translation of extracellular matrix, 62 pituitary hormones and serotonin pathway genes, in eIF4E phospho-mutant mice. We also 63 describe a previously unidentified translational control mechanism in the brain, whereby 64 eIF4E phosphorylation is required for inhibiting the translation of Gamma interferon 65 Activated Inhibitor of Translation (GAIT) element-containing mRNAs. These findings can be 66 used to design novel therapeutics for depression. 67 2 68 Introduction (625 words) 69 MAPK/ERK is a conserved signaling pathway, which in response to a plethora of 70 intracellular and extracellular signals such as cytokines, mitogens, growth factors, hormones 71 and neurotransmitters, elicits changes in cellular gene-expression programs (Kelleher et al., 72 2004; Thomas and Huganir, 2004). In the brain, activation of MAPK/ERK in response to 73 excitatory glutamatergic signaling, has been linked to regulation of synaptic plasticity, 74 learning and memory (English and Sweatt, 1997; Zhu et al., 2002; Kelleher et al., 2004; 75 Thomas and Huganir, 2004). Indeed, long-term potentiation of excitatory synaptic 76 transmission, mainly in the mammalian hippocampus, requires MAPK/ERK activity 77 (Kanterewicz et al., 2000; Kelleher et al., 2004). Accordingly, MAPK/ERK inhibition 78 impairs learning and hippocampal spatial memory (Atkins et al., 1998) and fear conditioning 79 in rodents (Schafe et al., 2000). 80 81 Downstream of MAPK/ERK, the MNK1/2 kinases regulate mRNA translation (Joshi and 82 Platanias, 2014) mainly by phosphorylating eIF4E on Ser209 (Flynn and Proud, 1995; Joshi 83 et al., 1995). eIF4E binds to the mRNA 5´ cap, and together with eIF4G (scaffolding protein) 84 and eIF4A (mRNA helicase) form the eIF4F complex, promoting translation initiation 85 (Hinnebusch et al., 2016). eIF4E stimulates the translation of a subset of mRNAs (‘eIF4E- 86 sensitive’), without upregulating global protein synthesis (Hinnebusch et al., 2016). eIF4E, 87 apart from its primary cap-binding function, also promotes mRNA restructuring and initiation 88 by stimulating eIF4A helicase activity (Feoktistova et al., 2013). Thus, eIF4E-sensitive 89 mRNAs contain long and highly structured 5´UTRs (such as proto-oncogenes and growth 90 factors), which require elevated helicase activity for their translation (Sonenberg and 91 Hinnebusch, 2009). 92 93 Most of the current literature posits that eIF4E phosphorylation promotes mRNA translation 94 (Pyronnet et al., 1999; Lachance et al., 2002; Panja et al., 2014; Bramham et al., 2016). It was 95 also suggested that eIF4E phosphorylation is not required for translation (McKendrick et al., 96 2001), or that it decreases cap-dependent translation (Knauf et al., 2001). Several studies 97 identified phospho-eIF4E-sensitive mRNAs in cancer models (Furic et al., 2010; Konicek et 98 al., 2011; Robichaud et al., 2015), however in brain, only a small subset was revealed. In the 99 hippocampus, phospho-eIF4E regulates the translation of Mmp9 (Gkogkas et al., 2014; 100 Gantois et
Recommended publications
  • A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
    Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated.
    [Show full text]
  • Supplementary Material Contents
    Supplementary Material Contents Immune modulating proteins identified from exosomal samples.....................................................................2 Figure S1: Overlap between exosomal and soluble proteomes.................................................................................... 4 Bacterial strains:..............................................................................................................................................4 Figure S2: Variability between subjects of effects of exosomes on BL21-lux growth.................................................... 5 Figure S3: Early effects of exosomes on growth of BL21 E. coli .................................................................................... 5 Figure S4: Exosomal Lysis............................................................................................................................................ 6 Figure S5: Effect of pH on exosomal action.................................................................................................................. 7 Figure S6: Effect of exosomes on growth of UPEC (pH = 6.5) suspended in exosome-depleted urine supernatant ....... 8 Effective exosomal concentration....................................................................................................................8 Figure S7: Sample constitution for luminometry experiments..................................................................................... 8 Figure S8: Determining effective concentration .........................................................................................................
    [Show full text]
  • Relevance of Translation Initiation in Diffuse Glioma Biology and Its
    cells Review Relevance of Translation Initiation in Diffuse Glioma Biology and its Therapeutic Potential Digregorio Marina 1, Lombard Arnaud 1,2, Lumapat Paul Noel 1, Scholtes Felix 1,2, Rogister Bernard 1,3 and Coppieters Natacha 1,* 1 Laboratory of Nervous System Disorders and Therapy, GIGA-Neurosciences Research Centre, University of Liège, 4000 Liège, Belgium; [email protected] (D.M.); [email protected] (L.A.); [email protected] (L.P.N.); [email protected] (S.F.); [email protected] (R.B.) 2 Department of Neurosurgery, CHU of Liège, 4000 Liège, Belgium 3 Department of Neurology, CHU of Liège, 4000 Liège, Belgium * Correspondence: [email protected] Received: 18 October 2019; Accepted: 26 November 2019; Published: 29 November 2019 Abstract: Cancer cells are continually exposed to environmental stressors forcing them to adapt their protein production to survive. The translational machinery can be recruited by malignant cells to synthesize proteins required to promote their survival, even in times of high physiological and pathological stress. This phenomenon has been described in several cancers including in gliomas. Abnormal regulation of translation has encouraged the development of new therapeutics targeting the protein synthesis pathway. This approach could be meaningful for glioma given the fact that the median survival following diagnosis of the highest grade of glioma remains short despite current therapy. The identification of new targets for the development of novel therapeutics is therefore needed in order to improve this devastating overall survival rate. This review discusses current literature on translation in gliomas with a focus on the initiation step covering both the cap-dependent and cap-independent modes of initiation.
    [Show full text]
  • Inhibition of the MID1 Protein Complex
    Matthes et al. Cell Death Discovery (2018) 4:4 DOI 10.1038/s41420-017-0003-8 Cell Death Discovery ARTICLE Open Access Inhibition of the MID1 protein complex: a novel approach targeting APP protein synthesis Frank Matthes1,MoritzM.Hettich1, Judith Schilling1, Diana Flores-Dominguez1, Nelli Blank1, Thomas Wiglenda2, Alexander Buntru2,HannaWolf1, Stephanie Weber1,InaVorberg 1, Alina Dagane2, Gunnar Dittmar2,3,ErichWanker2, Dan Ehninger1 and Sybille Krauss1 Abstract Alzheimer’s disease (AD) is characterized by two neuropathological hallmarks: senile plaques, which are composed of amyloid-β (Aβ) peptides, and neurofibrillary tangles, which are composed of hyperphosphorylated tau protein. Aβ peptides are derived from sequential proteolytic cleavage of the amyloid precursor protein (APP). In this study, we identified a so far unknown mode of regulation of APP protein synthesis involving the MID1 protein complex: MID1 binds to and regulates the translation of APP mRNA. The underlying mode of action of MID1 involves the mTOR pathway. Thus, inhibition of the MID1 complex reduces the APP protein level in cultures of primary neurons. Based on this, we used one compound that we discovered previously to interfere with the MID1 complex, metformin, for in vivo experiments. Indeed, long-term treatment with metformin decreased APP protein expression levels and consequently Aβ in an AD mouse model. Importantly, we have initiated the metformin treatment late in life, at a time-point where mice were in an already progressed state of the disease, and could observe an improved behavioral phenotype. These 1234567890 1234567890 findings together with our previous observation, showing that inhibition of the MID1 complex by metformin also decreases tau phosphorylation, make the MID1 complex a particularly interesting drug target for treating AD.
    [Show full text]
  • Distinct Interactions of Eif4a and Eif4e with RNA Helicase Ded1 Stimulate Translation in Vivo Suna Gulay, Neha Gupta, Jon R Lorsch, Alan G Hinnebusch*
    RESEARCH ARTICLE Distinct interactions of eIF4A and eIF4E with RNA helicase Ded1 stimulate translation in vivo Suna Gulay, Neha Gupta, Jon R Lorsch, Alan G Hinnebusch* Division of Molecular and Cellular Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, United States Abstract Yeast DEAD-box helicase Ded1 stimulates translation initiation, particularly of mRNAs with structured 5’UTRs. Interactions of the Ded1 N-terminal domain (NTD) with eIF4A, and Ded1- CTD with eIF4G, subunits of eIF4F, enhance Ded1 unwinding activity and stimulation of preinitiation complex (PIC) assembly in vitro. However, the importance of these interactions, and of Ded1-eIF4E association, in vivo were poorly understood. We identified separate amino acid clusters in the Ded1-NTD required for binding to eIF4A or eIF4E in vitro. Disrupting each cluster selectively impairs native Ded1 association with eIF4A or eIF4E, and reduces cell growth, polysome assembly, and translation of reporter mRNAs with structured 5’UTRs. It also impairs Ded1 stimulation of PIC assembly on a structured mRNA in vitro. Ablating Ded1 interactions with eIF4A/eIF4E unveiled a requirement for the Ded1-CTD for robust initiation. Thus, Ded1 function in vivo is stimulated by independent interactions of its NTD with eIF4E and eIF4A, and its CTD with eIF4G. Introduction Eukaryotic translation initiation is an intricate process that ensures accurate selection and decoding *For correspondence: of the mRNA start codon. Initiation
    [Show full text]
  • UNDERSTANDING the ROLE of EIF4A in GENE REGULATION in HEALTH and DISEASE THOMAS EDWARD WEBB B.Sc
    UNDERSTANDING THE ROLE OF EIF4A IN GENE REGULATION IN HEALTH AND DISEASE THOMAS EDWARD WEBB B.Sc. (Hons, Warwick) M.Sc. (Oxon) Thesis submitted to The University of Nottingham for the degree of Doctor of Philosophy (July 2012) 1 Abstract eIF4A Eukaryotic initiation factor 4A (eIF4A) is an ATP-dependent RNA helicase responsible for unwinding the secondary structure of mRNAs. In humans, eIF4A exists as three separate paralogs: eIF4AI and eIF4AII possess a high degree of homology while eIF4AIII is distinct. Knockdown of eIF4AII had no effect on the expression of a reporter construct containing a structured RNA hairpin. Knockdown of eIF4AI and treatment with hippuristanol (an eIF4A inhibitor) caused a dramatic reduction in the hairpin-mediated gene. This reporter system was developed as part of this project to act as a screen for eIF4A activity along with an in vitro screening approach. PDCD4 The activity of eIF4A is suppressed in vivo by the tumour suppressor PDCD4. The fact that loss of PDCD4 function increases the severity of DNA damage is probably attributable its eIF4A-suppressive activity. Alzheimer's Disease Based on previous microarray data, it was supposed that eIF4A inhibition may be therapeutically beneficial in the treatment of Alzheimer's disease. As part of this project, it was demonstrated that eIF4A suppression significantly reduced the expression of reporter genes preceded by the 5’ UTRs of genes predicted to play harmful roles in Alzheimer’s disease. The expression of reporter genes preceded by the 5’ UTR sequences of genes predicted to be beneficial in Alzheimer's were not affected by this suppression.
    [Show full text]
  • Lysine Demethylase KDM4A Associates with Translation Machinery and Regulates Protein Synthesis
    Published OnlineFirst January 6, 2015; DOI: 10.1158/2159-8290.CD-14-1326 RESEARCH BRIEF Lysine Demethylase KDM4A Associates with Translation Machinery and Regulates Protein Synthesis Capucine Van Rechem 1 , Joshua C. Black 1 , Myriam Boukhali 1 , Martin J. Aryee 2 , Susanne Gräslund 3 , Wilhelm Haas 1 , Cyril H. Benes 1 , and Johnathan R. Whetstine 1 ABSTRACT Chromatin-modifying enzymes are predominantly nuclear; however, these factors are also localized to the cytoplasm, and very little is known about their role in this compartment. In this report, we reveal a non–chromatin-linked role for the lysine-specifi c demethylase KDM4A. We demonstrate that KDM4A interacts with the translation initiation complex and affects the distribution of translation initiation factors within polysome fractions. Furthermore, KDM4A depletion reduced protein synthesis and enhanced the protein synthesis suppression observed with mTOR inhibi- tors, which paralleled an increased sensitivity to these drugs. Finally, we demonstrate that JIB-04, a JmjC demethylase inhibitor, suppresses translation initiation and enhances mTOR inhibitor sensitivity. These data highlight an unexpected cytoplasmic role for KDM4A in regulating protein synthesis and suggest novel potential therapeutic applications for this class of enzyme. SIGNIFICANCE: This report documents an unexpected cytoplasmic role for the lysine demethylase KDM4A. We demonstrate that KDM4A interacts with the translation initiation machinery, regulates protein synthesis and, upon coinhibition with mTOR inhibitors, enhances the translation suppression and cell sensitivity to these therapeutics. Cancer Discov; 5(3); 255–63. ©2015 AACR. See related commentary by Rothbart et al., p. 228. See related article by Van Rechem et al., p. 245. INTRODUCTION (KDM), respectively, are affecting the associated targets or their downstream processes.
    [Show full text]
  • The Role of Eif5a Hypusination in Mediating Oncogenic Mtor Signaling
    The role of eIF5A hypusination in mediating oncogenic mTOR signaling Yutian Cai Faculty of Medicine Department of Biochemistry McGill University, Montreal, Quebec, Canada December 2016 A thesis submitted to McGill University in partial fulfillment of the requirements of the degree of Master of Science ©Yutian Cai 2016 TABLE OF CONTENTS TABLE OF CONTENTS ........................................................................................ 2 TABLE OF FIGURES ............................................................................................ 4 PREFACE.............................................................................................................. 5 ACKNOWLEDGEMENTS ...................................................................................... 6 ABSTRACT ........................................................................................................... 7 RÉSUMÉ ............................................................................................................... 9 LIST OF ABBREVIATIONS ................................................................................. 11 CHAPTER 1: INTRODUCTION ........................................................................... 14 1.1 mRNA TRANSLATION ......................................................................... 14 1.1.1 TRANSLATION INITIATION....................................................................... 15 1.1.2 TRANSLATIONAL EFFICIENCY ............................................................... 20 1.1.3 TRANSLATION AND CANCER
    [Show full text]
  • A Comparative Study of Small Molecules Targeting Eif4a
    Downloaded from rnajournal.cshlp.org on October 2, 2021 - Published by Cold Spring Harbor Laboratory Press A Comparative Study of Small Molecules Targeting eIF4A Sai Kiran Naineni1,*, Rayelle Itoua Maïga1,*, Regina Cencic1, Andrea A. Putnam2, Luis A. Amador3, Abimael D. Rodriguez3, Eckhard Jankowsky2, and Jerry Pelletier1,4,5 1Department of Biochemistry, McGill University, 2Center for RNA Science and Therapeutics, School of Medicine, Case Western Reserve University, Cleveland, OH; 3University of Puerto Rico, Faculty of Natural Sciences, Dept of Chemistry, San Juan, Puerto Rico, 4Department of Oncology, 5Rosalind & Morris Goodman Cancer Research Centre, McGill University, Montreal, Québec, Canada, H3G 1Y6 Running Title: A comparative study of eIF4A inhibitors Key words: Translation initiation, eIF4A, RNA helicase, eIF4F, hippuristanol *Equal contribution by both authors To whom correspondence should be addressed: Jerry Pelletier, Department of Biochemistry, McGill University, Montreal, Quebec, H3G 1Y6, Canada. Tel: 1-514-398-2323; Fax: 514-398-2965; Email: [email protected] 1 Downloaded from rnajournal.cshlp.org on October 2, 2021 - Published by Cold Spring Harbor Laboratory Press ABSTRACT The PI3K/Akt/mTOR kinase pathway is extensively deregulated in human cancers. One critical node under regulation of this signaling axis is eukaryotic initiation factor (eIF) 4F, a complex involved in the control of translation initiation rates. eIF4F-dependent addictions arise during tumor initiation and maintenance due to increased eIF4F activity – generally in response to elevated PI3K/Akt/mTOR signaling flux. There is thus much interest in exploring eIF4F as a small molecule target for the development of new anti-cancer drugs. The DEAD-box RNA helicase, eIF4A, is an essential subunit of eIF4F and several potent small molecules (rocaglates, hippuristanol, pateamine A) affecting its activity have been identified and shown to demonstrate anti-cancer activity in vitro and in vivo in pre-clinical models.
    [Show full text]
  • Phosphoglycerate Dehydrogenase Promotes Pancreatic Cancer
    Ma et al. Journal of Experimental & Clinical Cancer Research (2019) 38:66 https://doi.org/10.1186/s13046-019-1053-y RESEARCH Open Access Phosphoglycerate dehydrogenase promotes pancreatic cancer development by interacting with eIF4A1 and eIF4E Xuhui Ma1,2,3, Boya Li1,2,3, Jie Liu1,2,3, Yan Fu1,2,3 and Yongzhang Luo1,2,3* Abstract Background: Pancreatic cancer is one of the most malignant cancers. The overall 5-year survival rate of its patients is 8%, the lowest among major cancer types. It is very urgent to study the development mechanisms of this cancer and provide potential targets for therapeutics design. Glucose, one of the most essential nutrients, is highly exploited for aerobic glycolysis in tumor cells to provide building blocks. However, the glucose consumption manner in pancreatic cancer cells is unclear. And the mechanism of the substantial metabolic pathway promoting pancreatic cancer development is also unrevealed. 13 Methods: C6 glucose was used to trace the glucose carbon flux and detected by mass spectrum. The expressions of PHGDH were determined in cells and pancreatic adenocarcinomas. Knockdown and overexpression were performed to investigate the roles of PHGDH on pancreatic cancer cell proliferation, colony formation and tumor growth. The mechanisms of PHGDH promoting pancreatic cancer development were studied by identifying the interacting proteins and detecting the regulatory functions on translation initiations. Results: Pancreatic cancer cells PANC-1 consumed large amounts of glucose in the serine and glycine de novo synthesis. Phosphoglycerate dehydrogenase (PHGDH) highly expressed and controlled this pathway. Knockdown of PHGDH significantly attenuated the tumor growth and prolonged the survival of tumor bearing mice.
    [Show full text]
  • General and Target-Specific Dexd/H RNA Helicases in Eukaryotic Translation Initiation
    International Journal of Molecular Sciences Review General and Target-Specific DExD/H RNA Helicases in Eukaryotic Translation Initiation Leo Shen 1 and Jerry Pelletier 1,2,3,* 1 Department of Biochemistry, McGill University, Montreal, QC H3G 1Y6, Canada; [email protected] 2 Department of Oncology, McGill University, Montreal, QC H4A 3T2, Canada 3 Rosalind and Morris Goodman Cancer Research Center, McGill University, Montreal, QC H3A 1A3, Canada * Correspondence: [email protected]; Tel.: +1-514-398-2323 Received: 5 June 2020; Accepted: 18 June 2020; Published: 20 June 2020 Abstract: DExD (DDX)- and DExH (DHX)-box RNA helicases, named after their Asp-Glu-x-Asp/His motifs, are integral to almost all RNA metabolic processes in eukaryotic cells. They play myriad roles in processes ranging from transcription and mRNA-protein complex remodeling, to RNA decay and translation. This last facet, translation, is an intricate process that involves DDX/DHX helicases and presents a regulatory node that is highly targetable. Studies aimed at better understanding this family of conserved proteins have revealed insights into their structures, catalytic mechanisms, and biological roles. They have also led to the development of chemical modulators that seek to exploit their essential roles in diseases. Herein, we review the most recent insights on several general and target-specific DDX/DHX helicases in eukaryotic translation initiation. Keywords: helicase; translation; initiation; DDX; DHX; eIF4A1; DDX3X; DHX9; DHX29; DHX36 1. Introduction RNA helicases play a role in all facets of RNA metabolism, ranging from transcription and translation, to processing and decay. These highly conserved enzymes use ATP to bind, unwind, and disrupt RNA structures and RNA-protein complexes [1].
    [Show full text]
  • 1 Supplementary Information
    1 Supplementary information 1.1 Public datasets analyzed Dataset Reference Accession code Human preimplantation embryo Yan et al. 7 GSE36552 Mouse preimplantation embryo Deng et al. 1 GSE45719 Mouse preimplantation embryo Goolam et al. 3 E-MTAB-3321 Neurogenesis in the SVZ Dulken et al. 2 PRJNA324289 Neurogenesis in the SVZ Llorens-Bobadilla et al. 5 GSE67833 Mouse cardiovascular progenitor cells Lescroart et al. 4 GSE100471 Mouse mesoderm Scialdone et al. 6 E-MTAB-4079 E-MTAB-4026 1 2 Supplementary figures A CORGI, 0.85 B HDG(Deng), 0.91 C HDG(Yan), 0.91 PCA2 PCA1 Batch Yan Deng Goolam D CCA−GL, 0.87 E Union, 0.94 F Intersection, 0.92 Cell type zygote 2cell 4cell 8cell 16cell blast Figure S1: PCA on the embryogenesis datasets across various gene sets. Related to Figure 2 in the paper. The temporal structure of the dataset is not well represented compared to Figure 2. 2 A CORGI, 0.86 B HDG(Deng), 0.72 C HDG(Yan), 0.84 CCA2 CCA1 Batch Yan Deng D CCA−GL, 0.96 E Union, 0.81 F Intersection, 0.82 Cell type zygote 2cell 4cell 8cell 16cell blast Figure S2: Canonical correlation analysis dimensionality reduction on the embryogenesis datasets across various gene sets. The temporal structure of the dataset is not well represented compared to Figure 2. 3 A CORGI, 0.28 B HDG(Deng), 0.36 C HDG(Yan), 0.35 MNNPCA2 MNNPCA1 Batch Yan Deng D CCA−GL, 0.14 E Union, 0.37 F Intersection, 0.27 Cell type zygote 2cell 4cell 8cell 16cell blast Figure S3: PCA on the mutual nearest neighbor batch-corrected embryogenesis datasets across various gene sets.
    [Show full text]