NK Cells: Receptors and Functions Eric Vivier and Sophie Ugolini

Total Page:16

File Type:pdf, Size:1020Kb

NK Cells: Receptors and Functions Eric Vivier and Sophie Ugolini NK cells: receptors and functions Eric Vivier and Sophie Ugolini Natural killer (NK) cells were identified in 1975 as lymphocytes of the innate many processes that were originally restricted to adaptive immunity, such immune system that can kill tumour cells. Since then, NK cells have been as priming, education and memory, are now known to occur in NK cells. shown to kill an array of ‘stressed’ cells and secrete cytokines that Indeed, NK cells undergo sophisticated processes of adaptation that allow participate in shaping adaptive immune responses. A key feature of NK cells them to be tuned to their environment. There is also a growing interest in resides in their capacity to distinguish stressed cells (such as tumour cells, manipulating NK cells in innovative therapeutic settings. For example, the infected cells and damaged cells) from normal cells. Although NK cells are understanding of NK cell inhibition by MHC class I-specific receptors has generally considered to be components of early innate immune defence, prompted the design of innovative anticancer therapies. The NK cell detection system includes numerous receptors, Key receptors on human NK cells the engagement of which dictates the quality and intensity Inhibitory receptors Activating receptors, adhesion molecules or co-stimulatory molecules of the NK cell response. NK cells use inhibitory receptors to gauge the absence of constitutively expressed self molecules Target cell Nectin 2 SLAMF7 Sialic CLEC2D (CD112, PVRL2) NECL2 L-selectin NECL5 AICL NTB-A (CRACC, on susceptible target cells. As a consequence, NK cells can Receptors for MHC class I and class I-Iike molecules B7-H6 acid Cadherins (LLT1) CMV pp65 NECL5 (CADM1) (CD62L) (CD155, PVR) (CLEC2B) CEACAM1 (SLAMF6) CS1, CD319) recognize ‘missing self’ on haematopoietic cells. By interacting HLA HLA-A or MICA, MICB, Collagen ? ? ? Viral HA BAT3 Viral HA (CD155, PVR) CD70 with MHC class I molecules that are constitutively expressed by HLA-E class I HLA-C HLA-B HLA-CHLA-E ULBP1 (RAET1I) HLA-C IgG CD72 CD48 most healthy cells under steady-state conditions but that may be lost under conditions of stress, MHC class I-specific inhibitory receptors provide a way for NK cells to remain tolerant to healthy self cells while being toxic towards stressed cells. CD16 NKp46 NKp30 NKp44 Supplement to Nature Publishing Group Supplement to Nature By contrast, NK cell activating receptors detect self molecules KIR2DS1 NKG2D (FcaRIIIA) (NCR1) (NCR3) (NCR2) that are expressed under conditions of cell stress. Only human NK cell receptors are shown and the list is not exhaustive. ITIM DAP12 There are several differences in NK cell receptors between YxxM ITSM mice and humans. In mice, inhibitory MHC class I-specific ITAM DNAM1 LAIR1 SIGLEC-3 (CD33) KLRG1 NKR-P1A CD94– LIR1 KIR2DL1 KIR2DL5A KIR3DL1 KIR3DL3 CD160 FcRa FcRa FcRa (CD226) CRTAM CD27 PSGL1 CD96 CD100 NKp80 CEACAM1 NTB-A SLAMF7 receptors are lectin-like dimers of the Ly49 family. Although SIGLEC-7 (KLRB1) NKG2A (ILT2, KIR2DL2 KIR2DL5B KIR3DL2 KIR2DS2, KIR2DS3, DAP12 DAP12 DAP10 (BY55) DAP12 (Tactile) (SEMA4D) (KLRF1, (SLAMF6) (CRACC, CD244 (TYROBP) (HCST) several activating NK cell receptors are present in humans and SIGLEC-9 LILRB1) KIR2DL3 KIR2DS4, KIR2DS5, CD94– CD3c CD3c CD3c CLEC5C) CS1, CD319) (2B4, mice (such as CD16, NKp46, DNAM1 and NKG2D), commonly KIR3DS1 NKG2C/E SLAMF4) used mouse strains lack orthologues of NKp30 and NKp44. NK cell Acquisition of NK cell function Biological function of NK cells and cellular crosstalk NK cell subsets and NK-like innate lymphoid cells MHC class I-specific MHC class I-specific MHC NK cells can recognize various stressed cells that Various NK cell subsets can be found in *WOCP /QWUG Lymphoid inhibitory receptor MHC inhibitory receptor class I have or have not been opsonized by antibodies. many lymphoid and non-lymphoid NKp46 NK1.1 NKp46 tissues class I NK cell activation triggered by this recognition can Healthy DNA damage, tissues, including the liver, lungs, thymus, (NKR-P1C) cell tumour transformation, lead to target cell lysis, as well as to the production pancreas and uterus. CD56hi intracytoplasmic + CD27– Educating – Healthy of various cytokines and chemokines, depending In humans, NK cells can be divided CD62L microbial infection hi CD11b– NK cell + IFNa CD94 cell cell on the nature of the stimulation. NK cells also according to the density of CD56 – NK cell hi CD57 Education engage in crosstalk with DCs in many different expression. There is evidence that CD56 ways, including NK cell killing of 1RUQPK\CVKQP NK cells give rise to mature cytotoxic NK1.1 NKp46 No activation Activating Activating CD56low NK cells, which can be further receptor ligand immature DCs (iDCs) and the Antibody divided based on expression of PEN5, a promotion of DC differentiation CD27+ IL-15Rα IL-12 Tolerance by NK cell-derived IFNγ and Stressed Stressed carbohydrate epitope present on PSGL1, CD16 CD11b– cell cell NKp46 IL-15 IL-18 TNF. Through these KLRG1, CD57, CD94 and CD62L. Uterine γ IL-12R hi –/low c biological activities, Elimination NK cells are CD56 CD16 and secrete CD56low Cytotoxicity + NK cells participate a specific set of chemokines, including CD62L NK1.1 NKp46 IL-2/15Rβ IL-18R low in shaping the CXCL8, CXCL10, CXCL12 and VEGF. CD94 Stressed Lysis Activation Lysis CD57– NK cell + subsequent In mice, four subsets of circulating Cytotoxicity cell IFNa + Priming NK cell immune NK cells can be distinguished: immature CD27 – – CD11b+ IFNAR response. CD27 CD11b NK cells, intermediate Missing self CD27+CD11b– and CD27+CD11b+ IFNa IL-21R Activation IL-21 Type I IFNs IFNa NK cell subsets, and mature CD16 KLRG1 KLRG1 IFNa NK cell Regulation CD27–CD11b+ NK cells. PSGL1 IL-10 NKp46 NK1.1 NKp46 To acquire the capacity to recognize target cells with low TNF Although NKp46 is a conserved marker MHC class I expression (‘missing self’ recognition), NK cells that best defines NK cells in mammals, CD56low Activation Cytotoxicity Cytotoxicity have to be educated by the detection of host MHC class I – Macrophage CD62L– – Stressed cells that express NCRs (NKp46 in mice, CD27 molecules by their cognate inhibitory receptors (a process also + Uptake of target IL-12 CD94– + cell Activation, IFNa NKp46, NKp30 and NKp44 in humans) CD11b cell debris IL-15 CD57+ referred to as tuning or licensing). NK cells also adapt to their NK cell proliferation IL-10 Lysis IL-18 and produce IL-22 are found in mucosal IFNa environment through the process of ‘priming’ by cytokines, such and survival IFNa Type I IFNs tissues. These cells are not cytotoxic, Blood Activation as IL-15 (trans-presented by DCs), IL-18 and IL-12. The integration do not secrete IFNγ and express the of various pathways (inhibitory and activating) following interaction Stress-induced self transcription factor RORγt instead of NKp46 NK1.1 s NKp46 with neighbouring cells governs the dynamic equilibrium that regulates E4BP4 (also known as NFIL3), which is NK cell activation and determines whether NK cells are activated to kill target IL-12 crucial for bona fide NK cells. IL-22 IL-22 iDC mDC T cell cells and produce cytokines. The innate immune system is generally thought to lack These IL-22-producing NCR+ innate CD56+ Maturation Activation the capacity for immunological memory. However, recent findings show that some lymphoid cells are therefore distinct Mucosal NK cells can be long-lived and mount a robust recall response to haptens or viruses. from conventional NK cell subsets. tissues Isolation of NK cells with STEMCELL Technologies NK cell isolation kits from STEMCELL consistently provide Species Selection Starting Sample Product Catalog # Abbreviations KIR, killer cell immunoglobulin-like receptor; KLRG, killer cell lectin-like Affiliations The isolation of highly purified, functional NK cells is critical for successful high purities (up to 99%) and high recoveries. Purified Human Negative PBMC EasySep™ Human NK Cell 17955 Eric Vivier and Sophie Ugolini are at the Centre d’Immunologie de Marseille-Luminy γc, common cytokine receptor γ-chain; AICL, activation-induced C-type receptor subfamily G; LAIR1, leukocyte-associated immunoglobulin-like NK cell research. STEMCELL Technologies offers fast and easy isolation NK cells can be used immediately in any downstream assay. Isolation Kit Whole Blood EasySep™ Direct Human 19665 lectin; BAT3, HLA-B associated transcript 3; CADM1, cell adhesion receptor 1; LIR1, leukocyte immunoglobulin-like receptor 1; LLT1, (CIML), INSERM-CNRS-Université de la Méditerranée, Marseille, France. E.V. is also at products for NK cells using the unique immunomagnetic and immunodensity To learn more about our specialized products for NK cell NK Cell Isolation Kit molecule 1; CD62L, CD62 ligand; CEACAM1, carcinoembryonic lectin-like transcript 1; mDC, mature DC; MIC, MHC class I polypeptide- the Assistance Publique des Hôpitaux de Marseille, Hôpital de la Conception, cell separation systems, EasySep™ and RosetteSep™. NK cell isolation kits from research or to request a sample, visit RosetteSep™ Human 15025 antigen-related cell adhesion molecule 1; CLEC, C-type lectin domain related sequence; NCR, natural cytotoxicity receptor; NECL, nectin-like; Marseille, France. e-mails: [email protected]; [email protected] NK Cell Enrichment Cocktail STEMCELL have supported cutting-edge research, including genetically www.stemcell.com/nkcells family; CMV, cytomegalovirus; CRACC, CD2-like-receptor activating NFIL3, nuclear factor IL-3-regulated protein; NKG2, NK group 2; , Positive PBMC EasySep™ Release Human 17755 Acknowledgements engineering NK cells for immunotherapy¹, analyzing NK cell function² ³, CD56 Positive Selection Kit cytotoxic cells; CRTAM, class I MHC-restricted T cell-associated NKR-P1A, NK cell receptor protein 1A; NTB-A, natural killer, T and B cell 4 5 1. Pomeroy et al. (2020) Mol Ther 28(1): 52–63. and studying the role of NK cells in HIV pathogenesis and immunology . molecule; CS1, CD2 subset 1; CXCL, CXC-chemokine ligand; antigen; PSGL1, P-selectin glycoprotein ligand 1; PVR, poliovirus E.V.
Recommended publications
  • ENSG Gene Encodes Effector TCR Pathway Costimulation Inhibitory/Exhaustion Synapse/Adhesion Chemokines/Receptors
    ENSG Gene Encodes Effector TCR pathway Costimulation Inhibitory/exhaustion Synapse/adhesion Chemokines/receptors ENSG00000111537 IFNG IFNg x ENSG00000109471 IL2 IL-2 x ENSG00000232810 TNF TNFa x ENSG00000271503 CCL5 CCL5 x x ENSG00000139187 KLRG1 Klrg1 x ENSG00000117560 FASLG Fas ligand x ENSG00000121858 TNFSF10 TRAIL x ENSG00000134545 KLRC1 Klrc1 / NKG2A x ENSG00000213809 KLRK1 Klrk1 / NKG2D x ENSG00000188389 PDCD1 PD-1 x x ENSG00000117281 CD160 CD160 x x ENSG00000134460 IL2RA IL-2 receptor x subunit alpha ENSG00000110324 IL10RA IL-10 receptor x subunit alpha ENSG00000115604 IL18R1 IL-18 receptor 1 x ENSG00000115607 IL18RAP IL-18 receptor x accessory protein ENSG00000081985 IL12RB2 IL-12 receptor x beta 2 ENSG00000186810 CXCR3 CXCR3 x x ENSG00000005844 ITGAL CD11a x ENSG00000160255 ITGB2 CD18; Integrin x x beta-2 ENSG00000156886 ITGAD CD11d x ENSG00000140678 ITGAX; CD11c x x Integrin alpha-X ENSG00000115232 ITGA4 CD49d; Integrin x x alpha-4 ENSG00000169896 ITGAM CD11b; Integrin x x alpha-M ENSG00000138378 STAT4 Stat4 x ENSG00000115415 STAT1 Stat1 x ENSG00000170581 STAT2 Stat2 x ENSG00000126561 STAT5a Stat5a x ENSG00000162434 JAK1 Jak1 x ENSG00000100453 GZMB Granzyme B x ENSG00000145649 GZMA Granzyme A x ENSG00000180644 PRF1 Perforin 1 x ENSG00000115523 GNLY Granulysin x ENSG00000100450 GZMH Granzyme H x ENSG00000113088 GZMK Granzyme K x ENSG00000057657 PRDM1 Blimp-1 x ENSG00000073861 TBX21 T-bet x ENSG00000115738 ID2 ID2 x ENSG00000176083 ZNF683 Hobit x ENSG00000137265 IRF4 Interferon x regulatory factor 4 ENSG00000140968 IRF8 Interferon
    [Show full text]
  • Cd160 Mouse Shrna Plasmid (Locus ID 54215) – TR514223 | Origene
    OriGene Technologies, Inc. 9620 Medical Center Drive, Ste 200 Rockville, MD 20850, US Phone: +1-888-267-4436 [email protected] EU: [email protected] CN: [email protected] Product datasheet for TR514223 Cd160 Mouse shRNA Plasmid (Locus ID 54215) Product data: Product Type: shRNA Plasmids Product Name: Cd160 Mouse shRNA Plasmid (Locus ID 54215) Locus ID: 54215 Synonyms: AU045688; By55 Vector: pRS (TR20003) Format: Retroviral plasmids Components: Cd160 - Mouse, 4 unique 29mer shRNA constructs in retroviral untagged vector(Gene ID = 54215). 5µg purified plasmid DNA per construct Non-effective 29-mer scrambled shRNA cassette in pRS Vector, TR30012, included for free. RefSeq: BC021596, NM_001163496, NM_001163497, NM_018767 Summary: CD160 antigen: Receptor on immune cells capable to deliver stimulatory or inhibitory signals that regulate cell activation and differentiation. Exists as a GPI-anchored and as a transmembrane form, each likely initiating distinct signaling pathways via phosphoinositol 3- kinase in activated NK cells and via LCK and CD247/CD3 zeta chain in activated T cells (By similarity). Receptor for both classical and non-classical MHC class I molecules (PubMed:16177084). Receptor or ligand for TNF superfamily member TNFRSF14, participating in bidirectional cell-cell contact signaling between antigen presenting cells and lymphocytes. Upon ligation of TNFRSF14, provides stimulatory signal to NK cells enhancing IFNG production and anti-tumor immune response (PubMed:25711213). On activated CD4+ T cells, interacts with TNFRSF14 and downregulates CD28 costimulatory signaling, restricting memory and alloantigen-specific immune response (By similarity). In the context of bacterial infection, acts as a ligand for TNFRSF14 on epithelial cells, triggering the production of antimicrobial proteins and proinflammatory cytokines (PubMed:22801499).[UniProtKB/Swiss-Prot Function] shRNA Design: These shRNA constructs were designed against multiple splice variants at this gene locus.
    [Show full text]
  • HLA Mismatching Favoring Host-Versus-Graft NK Cell Activity Via KIR3DL1 Is Associated With
    HLA mismatching favoring host-versus-graft NK cell activity via KIR3DL1 is associated with improved outcomes following lung transplantation John R. Greenland1,2,6, Haibo Sun3, Daniel Calabrese2, Tiffany Chong2, Jonathan P. Singer2, Jasleen Kukreja4, Steven R. Hays2, Jeffrey A. Golden2,4, George H. Caughey1,2,5, Jeffrey M. Venstrom2, Raja Rajalinginam3 1 Medical Service, Veterans Affairs Medical Center, San Francisco CA, 94121 2 Department of Medicine, University of California, San Francisco CA, 94143 3 Immunogenetics and Transplantation Laboratory, Department of Surgery, University of California, San Francisco CA, 94143 4 Department of Surgery, University of California, San Francisco CA, 94143 5 Cardiovascular Research Institute, University of California, San Francisco CA, 94143 6 Corresponding author: [email protected] Running Title: HVG NK cell activity in lung transplantation Abbreviations: antigen presenting cell (APC), bronchiolitis obliterans syndrome (BOS), bronchoalveolar lavage (BAL), chronic lung allograft dysfunction (CLAD), confidence interval (CI), forced expiratory volume in 1 second (FEV1), forced vital capacity (FVC), hazard ratio (HR), host-versus-graft (HVG), Killer cell immunoglobulin-like receptor (KIR), Major Histocompatibility Complex (MHC), Natural Killer (NK), restrictive allograft syndrome (RAS), United Network for Organ Sharing (UNOS), University of California, San Francisco (UCSF) Abstract Chronic lung allograft dysfunction (CLAD) is linked to rejection and limits survival following lung transplantation. HLA-Bw4 recipients of HLA-Bw6 grafts have enhanced host-versus-graft (HVG) NK cell activity mediated by KIR3DL1 ligand. Because natural killer (NK) cells may promote tolerance by depleting antigen-presenting cells, we hypothesized improved outcomes for HLA-Bw4 recipients of HLA- Bw6 grafts. We evaluated differences in acute cellular rejection (ACR) and CLAD-free survival across 252 KIR3DL1+ recipients from UCSF.
    [Show full text]
  • Human and Mouse CD Marker Handbook Human and Mouse CD Marker Key Markers - Human Key Markers - Mouse
    Welcome to More Choice CD Marker Handbook For more information, please visit: Human bdbiosciences.com/eu/go/humancdmarkers Mouse bdbiosciences.com/eu/go/mousecdmarkers Human and Mouse CD Marker Handbook Human and Mouse CD Marker Key Markers - Human Key Markers - Mouse CD3 CD3 CD (cluster of differentiation) molecules are cell surface markers T Cell CD4 CD4 useful for the identification and characterization of leukocytes. The CD CD8 CD8 nomenclature was developed and is maintained through the HLDA (Human Leukocyte Differentiation Antigens) workshop started in 1982. CD45R/B220 CD19 CD19 The goal is to provide standardization of monoclonal antibodies to B Cell CD20 CD22 (B cell activation marker) human antigens across laboratories. To characterize or “workshop” the antibodies, multiple laboratories carry out blind analyses of antibodies. These results independently validate antibody specificity. CD11c CD11c Dendritic Cell CD123 CD123 While the CD nomenclature has been developed for use with human antigens, it is applied to corresponding mouse antigens as well as antigens from other species. However, the mouse and other species NK Cell CD56 CD335 (NKp46) antibodies are not tested by HLDA. Human CD markers were reviewed by the HLDA. New CD markers Stem Cell/ CD34 CD34 were established at the HLDA9 meeting held in Barcelona in 2010. For Precursor hematopoetic stem cell only hematopoetic stem cell only additional information and CD markers please visit www.hcdm.org. Macrophage/ CD14 CD11b/ Mac-1 Monocyte CD33 Ly-71 (F4/80) CD66b Granulocyte CD66b Gr-1/Ly6G Ly6C CD41 CD41 CD61 (Integrin b3) CD61 Platelet CD9 CD62 CD62P (activated platelets) CD235a CD235a Erythrocyte Ter-119 CD146 MECA-32 CD106 CD146 Endothelial Cell CD31 CD62E (activated endothelial cells) Epithelial Cell CD236 CD326 (EPCAM1) For Research Use Only.
    [Show full text]
  • It Takes Two to Tango
    HIGHLIGHTS IMMUNOTHERAPY It takes two to tango Much of the recent work on the development of active, specific immunotherapy of cancer has focused on the induction of CD8+ cytotoxic T-lymphocyte (CTL) responses, and several studies have shown that it is possible to stimulate tumour-specific CTLs using dendritic cells (DCs) that are loaded with tumour antigens. But CD4+ T-helper type 1 (TH1) cells are also important day of vaccination and loaded with various So, the results from this Phase I trial provide components of effective immune responses. MHC class-I- and -II-restricted peptides. convincing evidence that cryopreserved DCs In this study, Schuler–Thurner and Patients with incurable melanoma were can induce TH1 responses against tumour colleagues provide the first evidence that DCs treated with five biweekly vaccinations of antigens without significant toxicity, and it that are loaded with tumour-specific peptides DCs, followed by assessment one month also encourages further development of can rapidly induce TH1 responses in cancer after the final vaccination. DC-based vaccination technology. patients that are readily detectable ex vivo. The results showed that the vaccination Elaine Bell References and links The DCs that were used for vaccination protocol induced a rapid TH1 response in in this study were derived from blood patients, both to a control immunizing antigen ORIGINAL RESEARCH PAPER Schuler–Thurner, B. et al. Rapid induction of tumor-specific type 1 T helper cells in monocytes that were matured ex vivo using and also to defined MHC class-II-restricted metastatic melanoma patients by vaccination with mature, a defined cocktail (consisting of interleukin tumour antigens.
    [Show full text]
  • Tools for Cell Therapy and Immunoregulation
    RnDSy-lu-2945 Tools for Cell Therapy and Immunoregulation Target Cell TIM-4 SLAM/CD150 BTNL8 PD-L2/B7-DC B7-H1/PD-L1 (Human) Unknown PD-1 B7-1/CD80 TIM-1 SLAM/CD150 Receptor TIM Family SLAM Family Butyrophilins B7/CD28 Families T Cell Multiple Co-Signaling Molecules Co-stimulatory Co-inhibitory Ig Superfamily Regulate T Cell Activation Target Cell T Cell Target Cell T Cell B7-1/CD80 B7-H1/PD-L1 T cell activation requires two signals: 1) recognition of the antigenic peptide/ B7-1/CD80 B7-2/CD86 CTLA-4 major histocompatibility complex (MHC) by the T cell receptor (TCR) and 2) CD28 antigen-independent co-stimulation induced by interactions between B7-2/CD86 B7-H1/PD-L1 B7-1/CD80 co-signaling molecules expressed on target cells, such as antigen-presenting PD-L2/B7-DC PD-1 ICOS cells (APCs), and their T cell-expressed receptors. Engagement of the TCR in B7-H2/ICOS L 2Ig B7-H3 (Mouse) the absence of this second co-stimulatory signal typically results in T cell B7-H1/PD-L1 B7/CD28 Families 4Ig B7-H3 (Human) anergy or apoptosis. In addition, T cell activation can be negatively regulated Unknown Receptors by co-inhibitory molecules present on APCs. Therefore, integration of the 2Ig B7-H3 Unknown B7-H4 (Mouse) Receptors signals transduced by co-stimulatory and co-inhibitory molecules following TCR B7-H5 4Ig B7-H3 engagement directs the outcome and magnitude of a T cell response Unknown Ligand (Human) B7-H5 including the enhancement or suppression of T cell proliferation, B7-H7 Unknown Receptor differentiation, and/or cytokine secretion.
    [Show full text]
  • List of Genes Used in Cell Type Enrichment Analysis
    List of genes used in cell type enrichment analysis Metagene Cell type Immunity ADAM28 Activated B cell Adaptive CD180 Activated B cell Adaptive CD79B Activated B cell Adaptive BLK Activated B cell Adaptive CD19 Activated B cell Adaptive MS4A1 Activated B cell Adaptive TNFRSF17 Activated B cell Adaptive IGHM Activated B cell Adaptive GNG7 Activated B cell Adaptive MICAL3 Activated B cell Adaptive SPIB Activated B cell Adaptive HLA-DOB Activated B cell Adaptive IGKC Activated B cell Adaptive PNOC Activated B cell Adaptive FCRL2 Activated B cell Adaptive BACH2 Activated B cell Adaptive CR2 Activated B cell Adaptive TCL1A Activated B cell Adaptive AKNA Activated B cell Adaptive ARHGAP25 Activated B cell Adaptive CCL21 Activated B cell Adaptive CD27 Activated B cell Adaptive CD38 Activated B cell Adaptive CLEC17A Activated B cell Adaptive CLEC9A Activated B cell Adaptive CLECL1 Activated B cell Adaptive AIM2 Activated CD4 T cell Adaptive BIRC3 Activated CD4 T cell Adaptive BRIP1 Activated CD4 T cell Adaptive CCL20 Activated CD4 T cell Adaptive CCL4 Activated CD4 T cell Adaptive CCL5 Activated CD4 T cell Adaptive CCNB1 Activated CD4 T cell Adaptive CCR7 Activated CD4 T cell Adaptive DUSP2 Activated CD4 T cell Adaptive ESCO2 Activated CD4 T cell Adaptive ETS1 Activated CD4 T cell Adaptive EXO1 Activated CD4 T cell Adaptive EXOC6 Activated CD4 T cell Adaptive IARS Activated CD4 T cell Adaptive ITK Activated CD4 T cell Adaptive KIF11 Activated CD4 T cell Adaptive KNTC1 Activated CD4 T cell Adaptive NUF2 Activated CD4 T cell Adaptive PRC1 Activated
    [Show full text]
  • Propranolol-Mediated Attenuation of MMP-9 Excretion in Infants with Hemangiomas
    Supplementary Online Content Thaivalappil S, Bauman N, Saieg A, Movius E, Brown KJ, Preciado D. Propranolol-mediated attenuation of MMP-9 excretion in infants with hemangiomas. JAMA Otolaryngol Head Neck Surg. doi:10.1001/jamaoto.2013.4773 eTable. List of All of the Proteins Identified by Proteomics This supplementary material has been provided by the authors to give readers additional information about their work. © 2013 American Medical Association. All rights reserved. Downloaded From: https://jamanetwork.com/ on 10/01/2021 eTable. List of All of the Proteins Identified by Proteomics Protein Name Prop 12 mo/4 Pred 12 mo/4 Δ Prop to Pred mo mo Myeloperoxidase OS=Homo sapiens GN=MPO 26.00 143.00 ‐117.00 Lactotransferrin OS=Homo sapiens GN=LTF 114.00 205.50 ‐91.50 Matrix metalloproteinase‐9 OS=Homo sapiens GN=MMP9 5.00 36.00 ‐31.00 Neutrophil elastase OS=Homo sapiens GN=ELANE 24.00 48.00 ‐24.00 Bleomycin hydrolase OS=Homo sapiens GN=BLMH 3.00 25.00 ‐22.00 CAP7_HUMAN Azurocidin OS=Homo sapiens GN=AZU1 PE=1 SV=3 4.00 26.00 ‐22.00 S10A8_HUMAN Protein S100‐A8 OS=Homo sapiens GN=S100A8 PE=1 14.67 30.50 ‐15.83 SV=1 IL1F9_HUMAN Interleukin‐1 family member 9 OS=Homo sapiens 1.00 15.00 ‐14.00 GN=IL1F9 PE=1 SV=1 MUC5B_HUMAN Mucin‐5B OS=Homo sapiens GN=MUC5B PE=1 SV=3 2.00 14.00 ‐12.00 MUC4_HUMAN Mucin‐4 OS=Homo sapiens GN=MUC4 PE=1 SV=3 1.00 12.00 ‐11.00 HRG_HUMAN Histidine‐rich glycoprotein OS=Homo sapiens GN=HRG 1.00 12.00 ‐11.00 PE=1 SV=1 TKT_HUMAN Transketolase OS=Homo sapiens GN=TKT PE=1 SV=3 17.00 28.00 ‐11.00 CATG_HUMAN Cathepsin G OS=Homo
    [Show full text]
  • Expression Tissue
    The Journal of Immunology Killer Cell Ig-Like Receptor and Leukocyte Ig-Like Receptor Transgenic Mice Exhibit Tissue- and Cell-Specific Transgene Expression1 Danny Belkin,* Michaela Torkar,* Chiwen Chang,* Roland Barten,* Mauro Tolaini,† Anja Haude,* Rachel Allen,* Michael J. Wilson,* Dimitris Kioussis,† and John Trowsdale2* To generate an experimental model for exploring the function, expression pattern, and developmental regulation of human Ig-like activating and inhibitory receptors, we have generated transgenic mice using two human genomic clones: 52N12 (a 150-Kb clone encompassing the leukocyte Ig-like receptor (LILR)B1 (ILT2), LILRB4 (ILT3), and LILRA1 (LIR6) genes) and 1060P11 (a 160-Kb clone that contains ten killer cell Ig-like receptor (KIR) genes). Both the KIR and LILR families are encoded within the leukocyte receptor complex, and are involved in immune modulation. We have also produced a novel mAb to LILRA1 to facilitate expression studies. The LILR transgenes were expressed in a similar, but not identical, pattern to that observed in humans: LILRB1 was expressed in B cells, most NK cells, and a small number of T cells; LILRB4 was expressed in a B cell subset; and LILRA1 was found on a ring of cells surrounding B cell areas on spleen sections, consistent with other data showing monocyte/macrophage expression. KIR transgenic mice showed KIR2DL2 expression on a subset of NK cells and T cells, similar to the pattern seen in humans, and expression of KIR2DL4, KIR3DS1, and KIR2DL5 by splenic NK cells. These observations indicate that linked regulatory elements within the genomic clones are sufficient to allow appropriate expression of KIRs in mice, and illustrate that the presence of the natural ligands for these receptors, in the form of human MHC class I proteins, is not necessary for the expression of the KIRs observed in these mice.
    [Show full text]
  • ORIGINAL ARTICLE Flow Cytometric Protein Expression Profiling As a Systematic Approach for Developing Disease-Specific Assays
    Leukemia (2006) 20, 2102–2110 & 2006 Nature Publishing Group All rights reserved 0887-6924/06 $30.00 www.nature.com/leu ORIGINAL ARTICLE Flow cytometric protein expression profiling as a systematic approach for developing disease-specific assays: identification of a chronic lymphocytic leukaemia-specific assay for use in rituximab-containing regimens AC Rawstron, R de Tute, AS Jack and P Hillmen Haematological Malignancy Diagnostic Service (HMDS), Leeds Teaching Hospitals, Leeds, UK Depletion of disease below the levels detected by sensitive sustained remissions only occur in patients achieving an MRD- minimal residual disease (MRD) assays is associated with negative complete response.12 Therefore MRD is increasingly prolonged survival in chronic lymphocytic leukaemia (CLL). being used as an end point for therapeutic trials, and several Flow cytometric MRD assays are now sufficiently sensitive and rapid to guide the duration of therapy in CLL, but generally rely studies are now using the assessment of MRD to define the on assessment of CD20 expression, which cannot be accurately duration of therapy. measured during and after therapeutic approaches containing Approaches using allele-specific oligonucleotide polymerase rituximab. The aim of this study was to use analytical software chain reaction (ASO-PCR) to the immunoglobulin gene of the developed for microarray analysis to provide a systematic B-CLL cell are generally accepted to show the highest sensitivity approach for MRD flow assay development. Samples from CLL for MRD detection. However, more recent four-colour ap- patients (n ¼ 49), normal controls (n ¼ 21) and other B-lympho- proaches show sensitivities nearing that of ASO-PCR6,11,13 with proliferative disorders (n ¼ 12) were assessed with a panel of 66 antibodies.
    [Show full text]
  • 1 ICAM3-Fc Outperforms Receptor-Specific Antibodies
    Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 10 April 2019 doi:10.20944/preprints201904.0118.v1 Peer-reviewed version available at Molecules 2019, 24, 1825; doi:10.3390/molecules24091825 ICAM3-Fc outperforms receptor-specific antibodies targeted nanoparticles to dendritic cells for cross-presentation Luis J. Cruz,1* Paul J. Tacken,2 Johan S. van der Schoot,2 Felix Rueda,3 Ruurd Torensma,2 Carl G. Figdor2* 1Translational Nanobiomaterials and Imaging, Department of Radiology, Leiden University Medical Center, Albinusdreef 2, 2333 ZA Leiden, The Netherlands. 2Department of Tumor Immunology, Radboud Insititute for Molecular Life Sciences, Radboud University Medical Center, Postbox 9101, 6500 HB Nijmegen, The Netherlands. 3Department of Biochemistry and Molecular Biology, University of Barcelona, Diagonal 643, 08028 Barcelona, Spain. Running title: ICAM3-Fc- versus antibody-targeted NP vaccines to human DCs Keywords: Delivery system; nanoparticle; targeting. AUTHOR INFORMATION Corresponding Author *Dr. Luis J. Cruz Translational Nanobiomaterials and Imaging, Department of Radiology, Bldg.1, C5-60. Leiden University Medical Center, Albinusdreef 2 2333 ZA Leiden, The Netherlands Tel: +31 71 5263025 Email: [email protected] *Prof. Dr. Carl G. Figdor Department of Tumor Immunology, Nijmegen Centre for Molecular Life Sciences, Radboud University Nijmegen Medical Centre, Postbox 9101, 6500 HB Nijmegen, The Netherlands. Fax: +31-24-3540339; Tel.: +31-24-3617600; E-mail: [email protected] 1 © 2019 by the author(s). Distributed
    [Show full text]
  • Regulation of Calreticulin–Major Histocompatibility Complex (MHC) Class I Interactions by ATP
    Regulation of calreticulin–major histocompatibility complex (MHC) class I interactions by ATP Sanjeeva Joseph Wijeyesakerea, Jessica K. Gagnonb, Karunesh Arorab, Charles L. Brooks IIIb, and Malini Raghavana,1 aDepartment of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI 48109; and bDepartment of Chemistry, University of Michigan, Ann Arbor, MI 48109 Edited by Peter Cresswell, Yale University School of Medicine, New Haven, CT, and approved September 1, 2015 (received for review May 26, 2015) The MHC class I peptide loading complex (PLC) facilitates the assembly computational methods validated by experimental approaches, we of MHC class I molecules with peptides, but factors that regulate the identify residues within the globular domain of calreticulin that stability and dynamics of the assembly complex are largely unchar- are important for ATP binding and ATPase activity. Based on acterized. Based on initial findings that ATP, in addition to MHC class further investigations into the functional effects of calreticulin I-specific peptide, is able to induce MHC class I dissociation from the mutants with deficiencies in ATP interactions, we elucidate a key PLC, we investigated the interaction of ATP with the chaperone role for ATP in the regulation of PLC dynamics and the in- calreticulin, an endoplasmic reticulum (ER) luminal, calcium-bind- teraction of calreticulin with other cellular proteins. ing component of the PLC that is known to bind ATP. We combined computational and experimental measurements to identify residues Results within the globular domain of calreticulin, in proximity to the high- ATP Destabilizes the PLC, Promoting MHC Class I Release. Calreticulin- affinity calcium-binding site, that are important for high-affinity ATP deficient mouse embryonic fibroblasts (MEFs) reconstituted binding and for ATPase activity.
    [Show full text]