Profile of Nancy A. Moran ‘‘ Always Liked Insects,’’ Says Nancy A
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The Plant Press
Special Symposium Issue continues on page 14 Department of Botany & the U.S. National Herbarium The Plant Press New Series - Vol. 20 - No. 3 July-September 2017 Botany Profile Plant Expeditions: History Has Its Eyes On You By Gary A. Krupnick he 15th Smithsonian Botani- as specimens (living or dried) in centuries field explorers to continue what they are cal Symposium was held at the past. doing. National Museum of Natural The symposium began with Laurence T he morning session began with a History (NMNH) and the U.S. Botanic Dorr (Chair of Botany, NMNH) giv- th Garden (USBG) on May 19, 2017. The ing opening remarks. Since the lectures series of talks focusing on the 18 symposium, titled “Exploring the Natural were taking place in Baird Auditorium, Tcentury explorations of Canada World: Plants, People and Places,” Dorr took the opportunity to talk about and the United States. Jacques Cayouette focused on the history of plant expedi- the theater’s namesake, Spencer Baird. A (Agriculture and Agri-Food Canada) tions. Over 200 participants gathered to naturalist, ornithologist, ichthyologist, and presented the first talk, “Moravian Mis- hear stories dedicated col- sionaries as Pioneers of Botanical Explo- and learn about lector, Baird was ration in Labrador (1765-1954).” He what moti- the first curator explained that missionaries of the Mora- vated botanical to be named vian Church, one of the oldest Protestant explorers of at the Smith- denominations, established missions the Western sonian Institu- along coastal Labrador in Canada in the Hemisphere in the 18th, 19th, and 20th tion and eventually served as Secretary late 1700s. -
Extreme Genome Reduction in Buchnera Spp.: Toward the Minimal Genome Needed for Symbiotic Life
Extreme genome reduction in Buchnera spp.: Toward the minimal genome needed for symbiotic life Rosario Gil, Beatriz Sabater-Mun˜ oz, Amparo Latorre, Francisco J. Silva, and Andre´ s Moya* Institut Cavanilles de Biodiversitat i Biologı´aEvolutiva, Universitat de Valencia, Apartat Oficial 2085, 46071 Vale`ncia, Spain Communicated by Francisco J. Ayala, University of California, Irvine, CA, February 5, 2002 (received for review November 27, 2001) Buchnera is a mutualistic intracellular symbiont of aphids. Their transmission (10). A recent study has demonstrated they may association began about 200 million years ago, with host and have positive effects in host fitness (14). It is conceivable that symbiont lineages evolving in parallel since that time. During this S-endosymbionts may interact and modify the established mu- coevolutionary process, Buchnera has experienced a dramatic de- tualism between the aphid and Buchnera. crease of genome size, retaining only essential genes for its Phylogenetic studies have proven that the symbiosis between specialized lifestyle. Previous studies reported that genome size in Buchnera and its host resulted from a single bacterial infection Buchnera spp. is very uniform, suggesting that genome shrinkage of the common ancestor to all extant aphids about 200 million occurred early in evolution, and that modern lineages retain the years ago (15), leading to the cospeciation of the host and their genome size of a common ancestor. Our physical mapping of symbionts. During this coevolutionary process, Buchnera suf- Buchnera genomes obtained from five aphid lineages shows that fered considerable genomic changes (i.e., a great reduction in the genome size is not conserved among them, but has been genome size, an increased AϩT bias, great accumulation of reduced down to 450 kb in some species. -
Phylogenetics of Buchnera Aphidicola Munson Et Al., 1991
Türk. entomol. derg., 2019, 43 (2): 227-237 ISSN 1010-6960 DOI: http://dx.doi.org/10.16970/entoted.527118 E-ISSN 2536-491X Original article (Orijinal araştırma) Phylogenetics of Buchnera aphidicola Munson et al., 1991 (Enterobacteriales: Enterobacteriaceae) based on 16S rRNA amplified from seven aphid species1 Farklı yaprak biti türlerinden izole edilen Buchnera aphidicola Munson et al., 1991 (Enterobacteriales: Enterobacteriaceae)’nın 16S rRNA’ya göre filogenetiği Gül SATAR2* Abstract The obligate symbiont, Buchnera aphidicola Munson et al., 1991 (Enterobacteriales: Enterobacteriaceae) is important for the physiological processes of aphids. Buchnera aphidicola genes detected in seven aphid species, collected in 2017 from different plants and altitudes in Adana Province, Turkey were analyzed to reveal phylogenetic interactions between Buchnera and aphids. The 16S rRNA gene was amplified and sequenced for this purpose and a phylogenetic tree built up by the neighbor-joining method. A significant correlation between B. aphidicola genes and the aphid species was revealed by this phylogenetic tree and the haplotype network. Specimens collected in Feke from Solanum melongena L. was distinguished from the other B. aphidicola genes on Aphis gossypii Glover, 1877 (Hemiptera: Aphididae) with a high bootstrap value of 99. Buchnera aphidicola in Myzus spp. was differentiated from others, and the difference between Myzus cerasi (Fabricius, 1775) and Myzus persicae (Sulzer, 1776) was clear. Although, B. aphidicola is specific to its host aphid, certain nucleotide differences obtained within the species could enable specification to geographic region or host plant in the future. Keywords: Aphid, genetic similarity, phylogenetics, symbiotic bacterium Öz Obligat simbiyont, Buchnera aphidicola Munson et al., 1991 (Enterobacteriales: Enterobacteriaceae), yaprak bitlerinin fizyolojik olaylarının sürdürülmesinde önemli bir rol oynar. -
Serial Horizontal Transfer of Vitamin-Biosynthetic Genes Enables the Establishment of New Nutritional Symbionts in Aphids’ Di-Symbiotic Systems
The ISME Journal (2020) 14:259–273 https://doi.org/10.1038/s41396-019-0533-6 ARTICLE Serial horizontal transfer of vitamin-biosynthetic genes enables the establishment of new nutritional symbionts in aphids’ di-symbiotic systems 1 1 1 2 2 Alejandro Manzano-Marıń ● Armelle Coeur d’acier ● Anne-Laure Clamens ● Céline Orvain ● Corinne Cruaud ● 2 1 Valérie Barbe ● Emmanuelle Jousselin Received: 25 February 2019 / Revised: 24 August 2019 / Accepted: 7 September 2019 / Published online: 17 October 2019 © The Author(s) 2019. This article is published with open access Abstract Many insects depend on obligate mutualistic bacteria to provide essential nutrients lacking from their diet. Most aphids, whose diet consists of phloem, rely on the bacterial endosymbiont Buchnera aphidicola to supply essential amino acids and B vitamins. However, in some aphid species, provision of these nutrients is partitioned between Buchnera and a younger bacterial partner, whose identity varies across aphid lineages. Little is known about the origin and the evolutionary stability of these di-symbiotic systems. It is also unclear whether the novel symbionts merely compensate for losses in Buchnera or 1234567890();,: 1234567890();,: carry new nutritional functions. Using whole-genome endosymbiont sequences of nine Cinara aphids that harbour an Erwinia-related symbiont to complement Buchnera, we show that the Erwinia association arose from a single event of symbiont lifestyle shift, from a free-living to an obligate intracellular one. This event resulted in drastic genome reduction, long-term genome stasis, and co-divergence with aphids. Fluorescence in situ hybridisation reveals that Erwinia inhabits its own bacteriocytes near Buchnera’s. Altogether these results depict a scenario for the establishment of Erwinia as an obligate symbiont that mirrors Buchnera’s. -
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016 April 1981 Revised, May 1982 2nd revision, April 1983 3rd revision, December 1999 4th revision, May 2011 Prepared for U.S. Department of Commerce Ohio Department of Natural Resources National Oceanic and Atmospheric Administration Division of Wildlife Office of Ocean and Coastal Resource Management 2045 Morse Road, Bldg. G Estuarine Reserves Division Columbus, Ohio 1305 East West Highway 43229-6693 Silver Spring, MD 20910 This management plan has been developed in accordance with NOAA regulations, including all provisions for public involvement. It is consistent with the congressional intent of Section 315 of the Coastal Zone Management Act of 1972, as amended, and the provisions of the Ohio Coastal Management Program. OWC NERR Management Plan, 2011 - 2016 Acknowledgements This management plan was prepared by the staff and Advisory Council of the Old Woman Creek National Estuarine Research Reserve (OWC NERR), in collaboration with the Ohio Department of Natural Resources-Division of Wildlife. Participants in the planning process included: Manager, Frank Lopez; Research Coordinator, Dr. David Klarer; Coastal Training Program Coordinator, Heather Elmer; Education Coordinator, Ann Keefe; Education Specialist Phoebe Van Zoest; and Office Assistant, Gloria Pasterak. Other Reserve staff including Dick Boyer and Marje Bernhardt contributed their expertise to numerous planning meetings. The Reserve is grateful for the input and recommendations provided by members of the Old Woman Creek NERR Advisory Council. The Reserve is appreciative of the review, guidance, and council of Division of Wildlife Executive Administrator Dave Scott and the mapping expertise of Keith Lott and the late Steve Barry. -
The Genomics and Evolution of Mutualistic and Pathogenic Bacteria
Symbiotic bacteria in animals • Oct 3 2006 • Nancy Moran • Professor, Ecology and Evolutionary Biology Reading: The gut flora as a forgotten organ by A. O’Hara and F Shanahan EMBO Reports. 2006 What is symbiosis? • Term typically used for a chronic association of members of more than one genetic lineage, without overt pathogenesis • Often for mutual benefit, which may be easy or difficult to observe – Exchange of nutrients or other metabolic products, protection, transport, structural integrity Microbes in animal evolution • Bacteria present by 3.9 bya, Archaea and Eukaryota by >2 bya – The Earth is populated by ecologically diverse microbes • Animals appear about 1 bya • Animals evolved in microbial soup – “Innate” immune system probably universal among animal phyla: pathogenic infection was a constant selection pressure – But animals also evolved codependence on microbes, some of which are required for normal development and reproduction evolutionary innovations through symbiosis: examples • Eukaryotic cell (mitochondria) • Photosynthesis in eukaryotes (plastids) • Colonization of land by plants (mycorrhizae) • Nitrogen fixation by plants (rhizobia) • Animal life at deep sea vents (chemoautotrophic life systems) • Use of many nutrient-limited niches by animal lineages Why do hosts and symbionts cooperate so often? • Persistent association allows both to increase their persistence and replication. –Coinheritance – Long-term infection • Intimate metabolic exchange generating immediate beneficial feedback Symbiosis- main variables • Route -
Table S4. Phylogenetic Distribution of Bacterial and Archaea Genomes in Groups A, B, C, D, and X
Table S4. Phylogenetic distribution of bacterial and archaea genomes in groups A, B, C, D, and X. Group A a: Total number of genomes in the taxon b: Number of group A genomes in the taxon c: Percentage of group A genomes in the taxon a b c cellular organisms 5007 2974 59.4 |__ Bacteria 4769 2935 61.5 | |__ Proteobacteria 1854 1570 84.7 | | |__ Gammaproteobacteria 711 631 88.7 | | | |__ Enterobacterales 112 97 86.6 | | | | |__ Enterobacteriaceae 41 32 78.0 | | | | | |__ unclassified Enterobacteriaceae 13 7 53.8 | | | | |__ Erwiniaceae 30 28 93.3 | | | | | |__ Erwinia 10 10 100.0 | | | | | |__ Buchnera 8 8 100.0 | | | | | | |__ Buchnera aphidicola 8 8 100.0 | | | | | |__ Pantoea 8 8 100.0 | | | | |__ Yersiniaceae 14 14 100.0 | | | | | |__ Serratia 8 8 100.0 | | | | |__ Morganellaceae 13 10 76.9 | | | | |__ Pectobacteriaceae 8 8 100.0 | | | |__ Alteromonadales 94 94 100.0 | | | | |__ Alteromonadaceae 34 34 100.0 | | | | | |__ Marinobacter 12 12 100.0 | | | | |__ Shewanellaceae 17 17 100.0 | | | | | |__ Shewanella 17 17 100.0 | | | | |__ Pseudoalteromonadaceae 16 16 100.0 | | | | | |__ Pseudoalteromonas 15 15 100.0 | | | | |__ Idiomarinaceae 9 9 100.0 | | | | | |__ Idiomarina 9 9 100.0 | | | | |__ Colwelliaceae 6 6 100.0 | | | |__ Pseudomonadales 81 81 100.0 | | | | |__ Moraxellaceae 41 41 100.0 | | | | | |__ Acinetobacter 25 25 100.0 | | | | | |__ Psychrobacter 8 8 100.0 | | | | | |__ Moraxella 6 6 100.0 | | | | |__ Pseudomonadaceae 40 40 100.0 | | | | | |__ Pseudomonas 38 38 100.0 | | | |__ Oceanospirillales 73 72 98.6 | | | | |__ Oceanospirillaceae -
Evolutionary Loss and Replacement of Buchnera, the Obligate Endosymbiont of Aphids
The ISME Journal (2018) 12:898–908 https://doi.org/10.1038/s41396-017-0024-6 ARTICLE Evolutionary loss and replacement of Buchnera, the obligate endosymbiont of aphids 1,2 1 Rebecca A. Chong ● Nancy A. Moran Received: 25 August 2017 / Revised: 24 October 2017 / Accepted: 11 November 2017 / Published online: 23 January 2018 © International Society of Microbial Ecology 2018 Abstract Symbiotic interactions between organisms create new ecological niches. For example, many insects survive on plant-sap with the aid of maternally transmitted bacterial symbionts that provision essential nutrients lacking in this diet. Symbiotic partners often enter a long-term relationship in which the co-evolutionary fate of lineages is interdependent. Obligate symbionts that are strictly maternally transmitted experience genetic drift and genome degradation, compromising symbiont function and reducing host fitness unless hosts can compensate for these deficits. One evolutionary solution is the acquisition of a novel symbiont with a functionally intact genome. Whereas almost all aphids host the anciently acquired bacterial endosymbiont Buchnera aphidicola (Gammaproteobacteria), Geopemphigus species have lost Buchnera and instead contain 1234567890 a maternally transmitted symbiont closely related to several known insect symbionts from the bacterial phylum Bacteroidetes. A complete genome sequence shows the symbiont has lost many ancestral genes, resulting in a genome size intermediate between that of free-living and symbiotic Bacteroidetes. The Geopemphigus symbiont retains biosynthetic pathways for amino acids and vitamins, as in Buchnera and other insect symbionts. This case of evolutionary replacement of Buchnera provides an opportunity to further understand the evolution and functional genomics of symbiosis. Introduction cells called bacteriocytes, where synthesized nutrients are exchanged with the host [3]. -
Interaction of Host Immune Systems with Endosymbionts in Glossina and Sitophilus Anna Zaidman-Rémy, Aurélien Vigneron, Brian Weiss, Abdelaziz Heddi
What can a weevil teach a fly, and reciprocally? Interaction of host immune systems with endosymbionts in Glossina and Sitophilus Anna Zaidman-Rémy, Aurélien Vigneron, Brian Weiss, Abdelaziz Heddi To cite this version: Anna Zaidman-Rémy, Aurélien Vigneron, Brian Weiss, Abdelaziz Heddi. What can a weevil teach a fly, and reciprocally? Interaction of host immune systems with endosymbionts in Glossina and Sitophilus. BMC Microbiology, BioMed Central, 2018, 18 (S1), 10.1186/s12866-018-1278-5. hal-02051649 HAL Id: hal-02051649 https://hal.archives-ouvertes.fr/hal-02051649 Submitted on 27 Feb 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution| 4.0 International License Zaidman-Rémy et al. BMC Microbiology 2018, 18(Suppl 1):150 https://doi.org/10.1186/s12866-018-1278-5 REVIEW Open Access What can a weevil teach a fly, and reciprocally? Interaction of host immune systems with endosymbionts in Glossina and Sitophilus Anna Zaidman-Rémy1*, Aurélien Vigneron2, Brian L Weiss2 and Abdelaziz Heddi1* Abstract The tsetse fly (Glossina genus) is the main vector of African trypanosomes, which are protozoan parasites that cause human and animal African trypanosomiases in Sub-Saharan Africa. -
Hemiptera: Adelgidae)
The ISME Journal (2012) 6, 384–396 & 2012 International Society for Microbial Ecology All rights reserved 1751-7362/12 www.nature.com/ismej ORIGINAL ARTICLE Bacteriocyte-associated gammaproteobacterial symbionts of the Adelges nordmannianae/piceae complex (Hemiptera: Adelgidae) Elena R Toenshoff1, Thomas Penz1, Thomas Narzt2, Astrid Collingro1, Stephan Schmitz-Esser1,3, Stefan Pfeiffer1, Waltraud Klepal2, Michael Wagner1, Thomas Weinmaier4, Thomas Rattei4 and Matthias Horn1 1Department of Microbial Ecology, University of Vienna, Vienna, Austria; 2Core Facility, Cell Imaging and Ultrastructure Research, University of Vienna, Vienna, Austria; 3Department of Veterinary Public Health and Food Science, Institute for Milk Hygiene, Milk Technology and Food Science, University of Veterinary Medicine Vienna, Vienna, Austria and 4Department of Computational Systems Biology, University of Vienna, Vienna, Austria Adelgids (Insecta: Hemiptera: Adelgidae) are known as severe pests of various conifers in North America, Canada, Europe and Asia. Here, we present the first molecular identification of bacteriocyte-associated symbionts in these plant sap-sucking insects. Three geographically distant populations of members of the Adelges nordmannianae/piceae complex, identified based on coI and ef1alpha gene sequences, were investigated. Electron and light microscopy revealed two morphologically different endosymbionts, coccoid or polymorphic, which are located in distinct bacteriocytes. Phylogenetic analyses of their 16S and 23S rRNA gene sequences assigned both symbionts to novel lineages within the Gammaproteobacteria sharing o92% 16S rRNA sequence similarity with each other and showing no close relationship with known symbionts of insects. Their identity and intracellular location were confirmed by fluorescence in situ hybridization, and the names ‘Candidatus Steffania adelgidicola’ and ‘Candidatus Ecksteinia adelgidicola’ are proposed for tentative classification. -
Ubiquity of the Symbiont Serratia Symbiotica in the Aphid Natural Environment
bioRxiv preprint doi: https://doi.org/10.1101/2021.04.18.440331; this version posted April 19, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Ubiquity of the Symbiont Serratia symbiotica in the Aphid Natural Environment: 2 Distribution, Diversity and Evolution at a Multitrophic Level 3 4 Inès Pons1*, Nora Scieur1, Linda Dhondt1, Marie-Eve Renard1, François Renoz1, Thierry Hance1 5 6 1 Earth and Life Institute, Biodiversity Research Centre, Université catholique de Louvain, 1348, 7 Louvain-la-Neuve, Belgium. 8 9 10 * Corresponding author: 11 Inès Pons 12 Croix du Sud 4-5, bte L7.07.04, 1348 Louvain la neuve, Belgique 13 [email protected] 14 15 16 17 18 19 20 21 22 23 24 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.04.18.440331; this version posted April 19, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 25 ABSTRACT 26 Bacterial symbioses are significant drivers of insect evolutionary ecology. However, despite recent 27 findings that these associations can emerge from environmentally derived bacterial precursors, there 28 is still little information on how these potential progenitors of insect symbionts circulates in the trophic 29 systems. The aphid symbiont Serratia symbiotica represents a valuable model for deciphering 30 evolutionary scenarios of bacterial acquisition by insects, as its diversity includes intracellular host- 31 dependent strains as well as gut-associated strains that have retained some ability to live independently 32 of their hosts and circulate in plant phloem sap. -
Bacterial Endosymbionts in Animals Nancy a Moran* and Paul Baumann†
270 Bacterial endosymbionts in animals Nancy A Moran* and Paul Baumann† Molecular phylogenetic studies reveal that many This review is concentrated on evolutionary aspects of endosymbioses between bacteria and invertebrate hosts result endosymbiosis involving bacteriocyte associates of animals. from ancient infections followed by strict vertical transmission For these bacteria, there is clear evidence of a coevolved, within host lineages. Endosymbionts display a distinctive mutualistic relationship with the host and a distinctive set constellation of genetic properties including AT-biased base of genetic traits that result from the association. To date, composition, accelerated sequence evolution, and, at least most studies have focused on insect symbionts, although sometimes, small genome size; these features suggest there are a few evolutionary studies of symbionts in other increased genetic drift. Molecular genetic characterization also invertebrate groups. The best-characterized animal has revealed adaptive, host-beneficial traits such as endosymbiont is Buchnera aphidicola, a bacteriocyte-associ- amplification of genes underlying nutrient provision. ated mutualist of aphids, insects that feed on phloem sap of host plants. Many comparative studies of host-beneficial Addresses and other loci have been carried out using Buchnera, and a *Department of Ecology and Evolutionary Biology, University of full genome has recently been completely sequenced Arizona, Tucson, Arizona 85721, USA; e-mail: [email protected] (H Ishikawa, personal communication), with sequencing of † Microbiology Section, University of California at Davis, Davis, another genome in progress. We emphasize molecular stud- California 95616, USA; e-mail: [email protected] ies within the past two years that have applied molecular Current Opinion in Microbiology 2000, 3:270–275 approaches to reconstruct the evolution of Buchnera and 1369-5274/00/$ — see front matter other bacteriocyte-associates.