Polycyclic Aromatic Hydrocarbons As Plausible Prebiotic Membrane Components
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Prebiological Evolution and the Metabolic Origins of Life
Prebiological Evolution and the Andrew J. Pratt* Metabolic Origins of Life University of Canterbury Keywords Abiogenesis, origin of life, metabolism, hydrothermal, iron Abstract The chemoton model of cells posits three subsystems: metabolism, compartmentalization, and information. A specific model for the prebiological evolution of a reproducing system with rudimentary versions of these three interdependent subsystems is presented. This is based on the initial emergence and reproduction of autocatalytic networks in hydrothermal microcompartments containing iron sulfide. The driving force for life was catalysis of the dissipation of the intrinsic redox gradient of the planet. The codependence of life on iron and phosphate provides chemical constraints on the ordering of prebiological evolution. The initial protometabolism was based on positive feedback loops associated with in situ carbon fixation in which the initial protometabolites modified the catalytic capacity and mobility of metal-based catalysts, especially iron-sulfur centers. A number of selection mechanisms, including catalytic efficiency and specificity, hydrolytic stability, and selective solubilization, are proposed as key determinants for autocatalytic reproduction exploited in protometabolic evolution. This evolutionary process led from autocatalytic networks within preexisting compartments to discrete, reproducing, mobile vesicular protocells with the capacity to use soluble sugar phosphates and hence the opportunity to develop nucleic acids. Fidelity of information transfer in the reproduction of these increasingly complex autocatalytic networks is a key selection pressure in prebiological evolution that eventually leads to the selection of nucleic acids as a digital information subsystem and hence the emergence of fully functional chemotons capable of Darwinian evolution. 1 Introduction: Chemoton Subsystems and Evolutionary Pathways Living cells are autocatalytic entities that harness redox energy via the selective catalysis of biochemical transformations. -
Laboratory Studies for Planetary Sciences
Laboratory Studies for Planetary Sciences A Planetary Decadal Survey White Paper Prepared by the American Astronomical Society (AAS) Working Group on Laboratory Astrophysics (WGLA) http://www.aas.org/labastro Targeted Panels: Terrestrial Planets; Outer Solar System Satellites; Small Bodies Lead Author: Murthy S. Gudipati Ice Spectroscopy Lab, Science Division, Mail Stop 183-301, Jet Propulsion Laboratory, California Institute of Technology, 4800 Oak Grove Drive, Pasadena, CA 91109. [email protected], 818-354-2637 Co-Authors: Michael A'Hearn - University of Maryland [email protected], 301-405-6076 Nancy Brickhouse - Harvard-Smithsonian Center for Astrophysics [email protected], 617-495-7438 John Cowan - University of Oklahoma [email protected], 405-325-3961 Paul Drake - University of Michigan [email protected], 734-763-4072 Steven Federman - University of Toledo [email protected], 419-530-2652 Gary Ferland - University of Kentucky [email protected], 859-257-879 Adam Frank - University of Rochester [email protected], 585-275-1717 Wick Haxton - University of Washington [email protected], 206-685-2397 Eric Herbst - Ohio State University [email protected], 614-292-6951 Michael Mumma - NASA/GSFC [email protected], 301-286-6994 Farid Salama - NASA/Ames Research Center [email protected], 650-604-3384 Daniel Wolf Savin - Columbia University [email protected], 212-854-4124, Lucy Ziurys – University of Arizona [email protected], 520-621-6525 1 Brief Description: The WGLA of the AAS promotes collaboration and exchange of knowledge between astronomy and planetary sciences and the laboratory sciences (physics, chemistry, and biology). -
Measurement of Cp/Cv for Argon, Nitrogen, Carbon Dioxide and an Argon + Nitrogen Mixture
Measurement of Cp/Cv for Argon, Nitrogen, Carbon Dioxide and an Argon + Nitrogen Mixture Stephen Lucas 05/11/10 Measurement of Cp/Cv for Argon, Nitrogen, Carbon Dioxide and an Argon + Nitrogen Mixture Stephen Lucas With laboratory partner: Christopher Richards University College London 5th November 2010 Abstract: The ratio of specific heats, γ, at constant pressure, Cp and constant volume, Cv, have been determined by measuring the oscillation frequency when a ball bearing undergoes simple harmonic motion due to the gravitational and pressure forces acting upon it. The γ value is an important gas property as it relates the microscopic properties of the molecules on a macroscopic scale. In this experiment values of γ were determined for input gases: CO2, Ar, N2, and an Ar + N2 mixture in the ratio 0.51:0.49. These were found to be: 1.1652 ± 0.0003, 1.4353 ± 0.0003, 1.2377 ± 0.0001and 1.3587 ± 0.0002 respectively. The small uncertainties in γ suggest a precise procedure while the discrepancy between experimental and accepted values indicates inaccuracy. Systematic errors are suggested; however it was noted that an average discrepancy of 0.18 between accepted and experimental values occurred. If this difference is accounted for, it can be seen that we measure lower vibrational contributions to γ at room temperature than those predicted by the equipartition principle. It can be therefore deduced that the classical idea of all modes contributing to γ is incorrect and there is actually a „freezing out‟ of vibrational modes at lower temperatures. I. Introduction II. Method The primary objective of this experiment was to determine the ratio of specific heats, γ, for gaseous Ar, N2, CO2 and an Ar + N2 mixture. -
Understanding the Application of Raman Spectroscopy to the Detection of Traces of Life
ASTROBIOLOGY Volume 10, Number 2, 2010 ª Mary Ann Liebert, Inc. DOI: 10.1089=ast.2009.0344 Understanding the Application of Raman Spectroscopy to the Detection of Traces of Life Craig P. Marshall,1 Howell G.M. Edwards,2 and Jan Jehlicka3 Abstract Investigating carbonaceous microstructures and material in Earth’s oldest sedimentary rocks is an essential part of tracing the origins of life on our planet; furthermore, it is important for developing techniques to search for traces of life on other planets, for example, Mars. NASA and ESA are considering the adoption of miniaturized Raman spectrometers for inclusion in suites of analytical instrumentation to be placed on robotic landers on Mars in the near future to search for fossil or extant biomolecules. Recently, Raman spectroscopy has been used to infer a biological origin of putative carbonaceous microfossils in Early Archean rocks. However, it has been demonstrated that the spectral signature obtained from kerogen (of known biological origin) is similar to spectra obtained from many poorly ordered carbonaceous materials that arise through abiotic processes. Yet there is still confusion in the literature as to whether the Raman spectroscopy of carbonaceous materials can indeed delineate a signature of ancient life. Despite the similar nature in spectra, rigorous structural interrogation between the thermal alteration products of biological and nonbiological organic materials has not been undertaken. There- fore, we propose a new way forward by investigating the second derivative, deconvolution, and chemometrics of the carbon first-order spectra to build a database of structural parameters that may yield distinguishable characteristics between biogenic and abiogenic carbonaceous material. -
Basic Geochemical Evaluation of Unconventional Resource Plays Stephan H
Basic Geochemical Evaluation of Unconventional Resource Plays Stephan H. Nordeng Introduction These changes provide clues that may answer questions such as: Basin-centered petroleum accumulations such as the Bakken Formation in the Williston Basin of North Dakota have recently been Is a given kerogen capable of producing petroleum? recognized as being important in the future development of energy resources. There are several features that these petroleum systems If so, what are the likely types of petroleum that may have in common. The systems typically include the deposition result? of organic-rich rocks that form the core of the petroleum system when subjected to elevated temperatures for suffi cient periods of Did a given source rock generate petroleum? time. This allows for the source rock to “mature” to the point that oil is generated. Once a suffi cient amount of generation has If so, how fast and possibly how much? occurred the oil is expelled into neighboring rocks and, in instances when these rocks are poorly permeable, the oil accumulates under Source Rock Evaluation high pressures. The three interconnected processes of deposition, Probably the most important aspect of evaluating a potential maturation, and expulsion may all be studied using various types source rock involves determining the amount and character of of geochemical analyses. organic matter that could have been available, given the proper conditions, to generate oil and gas. One of the fi rst things to Deposition of a potential source rock involves a tightly constrained consider is just how much organic carbon is currently present set of circumstances. These include high rates of biological in the rock. -
Inhibition of Premixed Carbon Monoxide-Hydrogen-Oxygen-Nitrogen Flames by Iron Pentacarbonylt
Inhibition of Premixed Carbon Monoxide-Hydrogen-Oxygen-Nitrogen Flames by Iron Pentacarbonylt MARC D. RUMMINGER+ AND GREGORY T. LINTERIS* Building and Fire Research Laboratory, National Institute of Standards and Technology, Gaithersburg, MD 20899, USA This paper presents measurements of the burning velocity of premixed CO-HrOrNz flames with and without the inhibitor Fe(CO)s over a range of initial Hz and Oz mole fractions. A numerical model is used to simulate the flame inhibition using a gas-phase chemical mechanism. For the uninhibited flames, predictions of burning velocity are excellent and for the inhibited flames, the qualitative agreement is good. The agreement depends strongly on the rate of the CO + OH <-> COz + H reaction and the rates of several key iron reactions in catalytic H- and O-atom scavenging cycles. Most of the chemical inhibition occurs through a catalytic cycle that converts o atoms into Oz molecules. This O-atom cycle is not important in methane flames. The H-atom cycle that causes most of the radical scavenging in the methane flames is also active in CO-Hz flames, but is of secondary importance. To vary the role of the H- and O-atom radical pools, the experiments and calculations are performed over a range of oxygen and hydrogen mole fraction. The degree of inhibition is shown to be related to the fraction of the net H- and O-atom destruction through the iron species catalytic cycles. The O-atom cycle saturates at a relatively low inhibitor mole fraction (-100 ppm), whereas the H-atom cycle saturates at a much higher inhibitor mole fraction (-400 ppm). -
Computational Surface Modelling of Ices and Minerals of Interstellar Interest—Insights and Perspectives
minerals Review Computational Surface Modelling of Ices and Minerals of Interstellar Interest—Insights and Perspectives Albert Rimola 1,* , Stefano Ferrero 1, Aurèle Germain 2 , Marta Corno 2 and Piero Ugliengo 2,3 1 Departament de Química, Universitat Autònoma de Barcelona, 08193 Bellaterra, Catalonia, Spain; [email protected] 2 Dipartimento di Chimica, Università degli Studi di Torino, 10125 Torino, Italy; [email protected] (A.G.); [email protected] (M.C.); [email protected] (P.U.) 3 Nanostructured Interfaces and Surfaces (NIS) Centre, Università degli Studi di Torino, 10125 Torino, Italy * Correspondence: [email protected]; Tel.: +34-93-581-3723 Abstract: The universe is molecularly rich, comprising from the simplest molecule (H2) to complex organic molecules (e.g., CH3CHO and NH2CHO), some of which of biological relevance (e.g., amino acids). This chemical richness is intimately linked to the different physical phases forming Solar-like planetary systems, in which at each phase, molecules of increasing complexity form. Interestingly, synthesis of some of these compounds only takes place in the presence of interstellar (IS) grains, i.e., solid-state sub-micron sized particles consisting of naked dust of silicates or carbonaceous materials that can be covered by water-dominated ice mantles. Surfaces of IS grains exhibit particular characteristics that allow the occurrence of pivotal chemical reactions, such as the presence of binding/catalytic sites and the capability to dissipate energy excesses through the grain phonons. The present know-how on the physicochemical features of IS grains has been obtained by the fruitful synergy of astronomical observational with astrochemical modelling and laboratory experiments. -
Interstellar Dust Within the Life Cycle of the Interstellar Medium K
EPJ Web of Conferences 18, 03001 (2011) DOI: 10.1051/epjconf/20111803001 C Owned by the authors, published by EDP Sciences, 2011 Interstellar dust within the life cycle of the interstellar medium K. Demyk1,2,a 1Université de Toulouse, UPS-OMP, IRAP, Toulouse, France 2CNRS, IRAP, 9 Av. colonel Roche, BP. 44346, 31028 Toulouse Cedex 4, France Abstract. Cosmic dust is omnipresent in the Universe. Its presence influences the evolution of the astronomical objects which in turn modify its physical and chemical properties. The nature of cosmic dust, its intimate coupling with its environment, constitute a rich field of research based on observations, modelling and experimental work. This review presents the observations of the different components of interstellar dust and discusses their evolution during the life cycle of the interstellar medium. 1. INTRODUCTION Interstellar dust grains are found everywhere in the Universe: in the Solar System, around stars at all evolutionary stages, in interstellar clouds of all kind, in galaxies and in the intergalactic medium. Cosmic dust is intimately mixed with the gas-phase and represents about 1% of the gas (in mass) in our Galaxy. The interstellar extinction and the emission of diffuse interstellar clouds is reproduced by three dust components: a population of large grains, the BGs (Big Grains, ∼10–500 nm) made of silicate and a refractory mantle, a population of carbonaceous nanograins, the VSGs (Very Small Grains, 1–10 nm) and a population of macro-molecules the PAHs (Polycyclic Aromatic Hydrocarbons) [1]. These three components are more or less abundant in the diverse astrophysical environments reflecting the coupling of dust with the environment and its evolution according to the physical and dynamical conditions. -
Nitrogen Oxide Concentrations in Natural Waters on Early Earth
The First Billion Years: Habitability 2019 (LPI Contrib. No. 2134) 1042.pdf NITROGEN OXIDE CONCENTRATIONS IN NATURAL WATERS ON EARLY EARTH. Sukrit Ran- jan1,*, Zoe R. Todd2, Paul B. Rimmer3,4, Dimitar D. Sasselov2 and Andrew R. Babbin1, 1MIT, 77 Massachusetts Avenue, CamBridge, MA 02139; [email protected], 2Harvard University, 60 Garden Street, Cambridge, MA 02138, 3MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, UK, 4University of Cambridge, JJ Thomson Avenue, Cambridge CB3 0HE, UK, *SCOL Postdoctoral Fellow. Introduction: A key challenge in origin-of-life the fact that UV photolysis would not have occurred studies is determining the environmental conditions below the photic depths of these molecules. on early Earth under which abiogenesis occurred [1]. Results: We find that the sinks due to Fe2+ and While some constraints do exist (e.g. zircon evidence UV are orders of magnitude stronger than the sink due for surface liquid water), relatively few constraints to vents. Inclusion of the effects of these sinks sup- - exist on the abundances of trace chemical species, presses [NOX ]<1 µM in the bulk ocean over the vast which are relevant to assessing the plausibility and majority of the plausible parameter space. Oceanic - guiding the development of postulated prebiotic NOX -dependent prebiotic chemistries must identify - chemical pathways which depend on these molecules. mechanisms to concentrate local [NOX ] above the - - - - Nitrogen oxide anions (NOX ; NO2 , NO3 ) are oceanic mean. However, [NOX ] could have reached - chemical species of special importance. NOX are in- prebiotically-relevant concentrations (³1 µM) in fa- voked in diverse prebiotic chemistries, from the origin vorable surficial aqueous environments, i.e. -
WHO Guidelines for Indoor Air Quality : Selected Pollutants
WHO GUIDELINES FOR INDOOR AIR QUALITY WHO GUIDELINES FOR INDOOR AIR QUALITY: WHO GUIDELINES FOR INDOOR AIR QUALITY: This book presents WHO guidelines for the protection of pub- lic health from risks due to a number of chemicals commonly present in indoor air. The substances considered in this review, i.e. benzene, carbon monoxide, formaldehyde, naphthalene, nitrogen dioxide, polycyclic aromatic hydrocarbons (especially benzo[a]pyrene), radon, trichloroethylene and tetrachloroethyl- ene, have indoor sources, are known in respect of their hazard- ousness to health and are often found indoors in concentrations of health concern. The guidelines are targeted at public health professionals involved in preventing health risks of environmen- SELECTED CHEMICALS SELECTED tal exposures, as well as specialists and authorities involved in the design and use of buildings, indoor materials and products. POLLUTANTS They provide a scientific basis for legally enforceable standards. World Health Organization Regional Offi ce for Europe Scherfi gsvej 8, DK-2100 Copenhagen Ø, Denmark Tel.: +45 39 17 17 17. Fax: +45 39 17 18 18 E-mail: [email protected] Web site: www.euro.who.int WHO guidelines for indoor air quality: selected pollutants The WHO European Centre for Environment and Health, Bonn Office, WHO Regional Office for Europe coordinated the development of these WHO guidelines. Keywords AIR POLLUTION, INDOOR - prevention and control AIR POLLUTANTS - adverse effects ORGANIC CHEMICALS ENVIRONMENTAL EXPOSURE - adverse effects GUIDELINES ISBN 978 92 890 0213 4 Address requests for publications of the WHO Regional Office for Europe to: Publications WHO Regional Office for Europe Scherfigsvej 8 DK-2100 Copenhagen Ø, Denmark Alternatively, complete an online request form for documentation, health information, or for per- mission to quote or translate, on the Regional Office web site (http://www.euro.who.int/pubrequest). -
Hydrogen, Nitrogen and Argon Chemistry
Hydrogen, Nitrogen and Argon Chemistry Author: Brittland K. DeKorver Institute for Chemical Education and Nanoscale Science and Engineering Center University of Wisconsin-Madison Purpose: To learn about 3 of the gases that are in Earth’s atmosphere. Learning Objectives: 1. Understand that the atmosphere is made up of many gases. 2. Learn about the differences in flammability of nitrogen and hydrogen. 3. Learn what is produced during electrolysis. Next Generation Science Standards (est. 2013): PS1.A: Structure and Properties of Matter PS1.B: Chemical Reactions PS3.D: Energy in Chemical Processes and Everyday Life (partial) ETS1.A: Defining Engineering Problems ETS1.B: Designing Solutions to Engineering Problems ETS1.C: Optimizing the Design Solution National Science Education Standards (valid 1996-2013): Physical Science Standards: Properties and changes of properties in matter Earth and Space Science Standards: Structure of the earth system Suggested Previous Activities: Oxygen Investigation and Carbon Dioxide Chemistry Grade Level: 2-8 Time: 1 hour Materials: Safety glasses Manganese dioxide Work gloves (for handling Tea-light candles steel wool) Matches Test tubes Spatulas Beakers Wooden splints 100mL graduated cylinders Waste bucket for burnt 15mL graduated cylinders materials 3% hydrogen peroxide Vinegar Baking soda Safety: 1. Students should wear safety glasses during all activities. 2. Students should not be allowed to use matches or candle. 3. Students should be cautioned to only mix the chemicals as directed. Introduction: Air refers to the mixture of gases that make up the Earth’s atmosphere. In this lesson, students will learn about hydrogen (present in very, very small amounts in our atmosphere), nitrogen (the most prevalent gas), and argon (third behind nitrogen and oxygen.) Procedures: 1. -
Benzene Matter Emissions from Stationary Sources (EMTIC M-110)
W4444444444444444444444444444444444444444444444444444444444444444 444444444444U EMISSION MEASUREMENT TECHNICAL INFORMATION CENTER CONDITIONAL TEST METHOD W4444444444444444444444444444444444444444444444444444444444444444 444444444444U Prepared by Emission Measurement Branch EMTIC CTM-014.WPF Technical Support Division, OAQPS, EPA 12/2/92 Determination of Benzene Matter Emissions from Stationary Sources (EMTIC M-110) INTRODUCTION Performance of this method should not be attempted by persons unfamiliar with the operation of a gas chromatograph, nor by those who are unfamiliar with source sampling, as there are many details that are beyond the scope of this presentation. Care must be exercised to prevent exposure of sampling personnel to benzene, a carcinogen. 1. PRINCIPLE AND APPLICABILITY 1.1 Principle. An integrated bag sample of stack gas containing benzene and other organics is subjected to gas chromatographic (GC) analysis, using a flame ionization detector (FID). 1.2 Applicability. The method is applicable to the measurement of benzene in stack gases only from specified processes. It is not applicable where the benzene is contained in particulate matter. 2. RANGE AND SENSITIVITY The procedure described herein is applicable to the measurement of benzene in the 0.1 to 70 ppm range. The upper limit may be extended by extending the calibration range or by dilution of the sample. 3. INTERFERENCES The chromatograph columns and the corresponding operating parameters herein described have been represented as being useful for producing an adequate resolution of benzene. However, resolution interferences may be encountered on some sources. Also, the chromatograph operator may know of a column that will produce a superior resolution of benzene without reducing the response to benzene as specified in section 4.3.1.