Terrestrial Pteridophytes As Indicators of a Forest-Like Environment in Rubber Production Systems in the Lowlands of Jambi, Sumatra H
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Photosynthetic Studies on Eight Filmy Ferns (Hymenophyllaceae) from Shaded Habitats in Malaysia
PHOTOSYNTHETIC STUDIES ON EIGHT FILMY FERNS (HYMENOPHYLLACEAE) FROM SHADED HABITATS IN MALAYSIA NURUL HAFIZA BINTI MOHAMMAD ROSLI FACULTY OF SCIENCE UNIVERSITY OF MALAYA KUALA LUMPUR 2014 PHOTOSYNTHETIC STUDIES ON EIGHT FILMY FERNS (HYMENOPHYLLACEAE) FROM SHADED HABITATS IN MALAYSIA NURUL HAFIZA BINTI MOHAMMAD ROSLI DISSERTATION SUBMITTED IN FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF MASTER OF SCIENCE INSTITUTE OF BIOLOGICAL SCIENCES FACULTY OF SCIENCE UNIVERSITY OF MALAYA KUALA LUMPUR 2014 UNIVERSITI MALAYA ORIGINAL LITERARY WORK DECLARATION Name of Candidate: NURUL HAFIZA BINTI MOHAMMAD ROSLI I/C/Passport No: 880307-56-5240 Regisration/Matric No.: SGR100064 Name of Degree: MASTER OF SCIENCE Title of Project Paper/Research Report/Dissertation/Thesis (“this Work”): “PHOTOSYNTHETIC STUDIES ON EIGHT FILMY FERNS (HYMENOPHYLLACEAE) FROM SHADED HABITATS IN MALAYSIA” Field of Study: PLANT PHYSIOLOGY I do solemnly and sincerely declare that: (1) I am the sole author/writer of this Work, (2) This Work is original, (3) Any use of any work in which copyright exists was done by way of fair dealing and for permitted purposes and any excerpt or extract from, or reference to or reproduction of any copyright work has been disclosed expressly and sufficiently and the title of the Work and its authorship have been acknowledged in this Work, (4) I do not have any actual knowledge nor do I ought reasonably to know that the making of this work constitutes an infringement of any copyright work, (5) I hereby assign all and every rights in the copyright to this Work to the University of Malaya (“UM”), who henceforth shall be owner of the copyright in this Work and that any reproduction or use in any form or by any means whatsoever is prohibited without the written consent of UM having been first had and obtained, (6) I am fully aware that if in the course of making this Work I have infringed any copyright whether intentionally or otherwise, I may be subject to legal action or any other action as may be determined by UM. -
Author's Personal Copy
Author's personal copy Plant Syst Evol DOI 10.1007/s00606-013-0933-4 ORIGINAL ARTICLE Phylogeny and classification of the Cuban species of Elaphoglossum (Dryopteridaceae), with description of Elaphoglossum sect. Wrightiana sect. nov. Josmaily Lo´riga • Alejandra Vasco • Ledis Regalado • Jochen Heinrichs • Robbin C. Moran Received: 23 May 2013 / Accepted: 12 October 2013 Ó Springer-Verlag Wien 2013 Abstract Although a worldwide phylogeny of the bol- primary hemiepiphytism of E. amygdalifolium, which is bitidoid fern genus Elaphoglossum is now available, little sister to the rest of the genus, was derived independently is known about the phylogenetic position of the 34 Cuban from ancestors that were root climbers. Based on our species. We performed a phylogenetic analysis of a chlo- phylogenetic analysis and morphological investigations, roplast DNA dataset for atpß-rbcL (including a fragment of the species of Cuban Elaphoglossum were found to occur the gene atpß), rps4-trnS, and trnL-trnF. The dataset in E. sects. Elaphoglossum, Lepidoglossa, Polytrichia, included 79 new sequences of Elaphoglossum (67 from Setosa, and Squamipedia. Cuba) and 299 GenBank sequences of Elaphoglossum and its most closely related outgroups, the bolbitidoid genera Keywords Bolbitidoid fern Á Chloroplast DNA Arthrobotrya, Bolbitis, Lomagramma, Mickelia, and Ter- sequences Á Growth habit Á Holoepiphytism Á Primary atophyllum. We obtained a well-resolved phylogeny hemiepiphytism Á Root climber Á Taxonomy including the seven main lineages recovered in previous phylogenetic studies of Elaphoglossum. The Cuban ende- mic E. wrightii was found to be an early diverging lineage Introduction of Elaphoglossum, not a member of E. sect. Squamipedia where it was previously classified. -
A Journal on Taxonomic Botany, Plant Sociology and Ecology Reinwardtia
A JOURNAL ON TAXONOMIC BOTANY, PLANT SOCIOLOGY AND ECOLOGY REINWARDTIA A JOURNAL ON TAXONOMIC BOTANY, PLANT SOCIOLOGY AND ECOLOGY Vol. 13(4): 317 —389, December 20, 2012 Chief Editor Kartini Kramadibrata (Herbarium Bogoriense, Indonesia) Editors Dedy Darnaedi (Herbarium Bogoriense, Indonesia) Tukirin Partomihardjo (Herbarium Bogoriense, Indonesia) Joeni Setijo Rahajoe (Herbarium Bogoriense, Indonesia) Teguh Triono (Herbarium Bogoriense, Indonesia) Marlina Ardiyani (Herbarium Bogoriense, Indonesia) Eizi Suzuki (Kagoshima University, Japan) Jun Wen (Smithsonian Natural History Museum, USA) Managing editor Himmah Rustiami (Herbarium Bogoriense, Indonesia) Secretary Endang Tri Utami Lay out editor Deden Sumirat Hidayat Illustrators Subari Wahyudi Santoso Anne Kusumawaty Reviewers Ed de Vogel (Netherlands), Henk van der Werff (USA), Irawati (Indonesia), Jan F. Veldkamp (Netherlands), Jens G. Rohwer (Denmark), Lauren M. Gardiner (UK), Masahiro Kato (Japan), Marshall D. Sunberg (USA), Martin Callmander (USA), Rugayah (Indonesia), Paul Forster (Australia), Peter Hovenkamp (Netherlands), Ulrich Meve (Germany). Correspondence on editorial matters and subscriptions for Reinwardtia should be addressed to: HERBARIUM BOGORIENSE, BOTANY DIVISION, RESEARCH CENTER FOR BIOLOGY-LIPI, CIBINONG 16911, INDONESIA E-mail: [email protected] REINWARDTIA Vol 13, No 4, pp: 367 - 377 THE NEW PTERIDOPHYTE CLASSIFICATION AND SEQUENCE EM- PLOYED IN THE HERBARIUM BOGORIENSE (BO) FOR MALESIAN FERNS Received July 19, 2012; accepted September 11, 2012 WITA WARDANI, ARIEF HIDAYAT, DEDY DARNAEDI Herbarium Bogoriense, Botany Division, Research Center for Biology-LIPI, Cibinong Science Center, Jl. Raya Jakarta -Bogor Km. 46, Cibinong 16911, Indonesia. E-mail: [email protected] ABSTRACT. WARD AM, W., HIDAYAT, A. & DARNAEDI D. 2012. The new pteridophyte classification and sequence employed in the Herbarium Bogoriense (BO) for Malesian ferns. -
Fern Classification
16 Fern classification ALAN R. SMITH, KATHLEEN M. PRYER, ERIC SCHUETTPELZ, PETRA KORALL, HARALD SCHNEIDER, AND PAUL G. WOLF 16.1 Introduction and historical summary / Over the past 70 years, many fern classifications, nearly all based on morphology, most explicitly or implicitly phylogenetic, have been proposed. The most complete and commonly used classifications, some intended primar• ily as herbarium (filing) schemes, are summarized in Table 16.1, and include: Christensen (1938), Copeland (1947), Holttum (1947, 1949), Nayar (1970), Bierhorst (1971), Crabbe et al. (1975), Pichi Sermolli (1977), Ching (1978), Tryon and Tryon (1982), Kramer (in Kubitzki, 1990), Hennipman (1996), and Stevenson and Loconte (1996). Other classifications or trees implying relationships, some with a regional focus, include Bower (1926), Ching (1940), Dickason (1946), Wagner (1969), Tagawa and Iwatsuki (1972), Holttum (1973), and Mickel (1974). Tryon (1952) and Pichi Sermolli (1973) reviewed and reproduced many of these and still earlier classifica• tions, and Pichi Sermolli (1970, 1981, 1982, 1986) also summarized information on family names of ferns. Smith (1996) provided a summary and discussion of recent classifications. With the advent of cladistic methods and molecular sequencing techniques, there has been an increased interest in classifications reflecting evolutionary relationships. Phylogenetic studies robustly support a basal dichotomy within vascular plants, separating the lycophytes (less than 1 % of extant vascular plants) from the euphyllophytes (Figure 16.l; Raubeson and Jansen, 1992, Kenrick and Crane, 1997; Pryer et al., 2001a, 2004a, 2004b; Qiu et al., 2006). Living euphyl• lophytes, in turn, comprise two major clades: spermatophytes (seed plants), which are in excess of 260 000 species (Thorne, 2002; Scotland and Wortley, Biology and Evolution of Ferns and Lycopliytes, ed. -
Microclimate Fluctuation Correlated with Beta Diversity of Epiphyllous Bryophyte Communities
UC Berkeley UC Berkeley Electronic Theses and Dissertations Title Adaptive Traits and Community Assembly of Epiphyllous Bryophytes Permalink https://escholarship.org/uc/item/02t0k1qh Author Kraichak, Ekaphan Publication Date 2013 Peer reviewed|Thesis/dissertation eScholarship.org Powered by the California Digital Library University of California Adaptive Traits and Community Assembly of Epiphyllous Bryophytes By Ekaphan Kraichak A dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy in Integrative Biology in the Graduate Division of the University of California, Berkeley Committee in charge: Professor Brent D. Mishler, Chair Professor David D. Ackerly Professor Katherine N. Suding Spring 2013 Abstract Adaptive Traits and Community Assembly of Epiphyllous Bryophytes By Ekaphan Kraichak Doctor of Philosophy in Integrative Biology University of California, Berkeley Professor Brent D. Mishler, Chair Leaf surfaces of tropical vascular plants provide homes for diverse groups of organisms, including epiphyllous (leaf-colonizing) bryophytes. Each leaf harbors a temporally and spatially discrete community of organisms, providing an excellent system for answering some of the most fundamental questions in ecology and evolution. In this dissertation, I investigated two main aspects of epiphyllous bryophyte biology: 1) adaptive traits of bryophytes to living on the leaf surface, and 2) community assembly of epiphyllous bryophytes in space (between-hosts) and time (succession). For the first part, I used published trait data and phylogeny of liverworts in family Lejeuneaceae to demonstrate that only the production of asexual propagules appeared to evolve in response to living on the leaf surface, while other hypothesized traits did not have correlated evolution with epiphylly. The second portion dealt with the assembly of communities among different host types. -
Phylogenetic Analyses Place the Monotypic Dryopolystichum Within Lomariopsidaceae
A peer-reviewed open-access journal PhytoKeysPhylogenetic 78: 83–107 (2017) analyses place the monotypic Dryopolystichum within Lomariopsidaceae 83 doi: 10.3897/phytokeys.78.12040 RESEARCH ARTICLE http://phytokeys.pensoft.net Launched to accelerate biodiversity research Phylogenetic analyses place the monotypic Dryopolystichum within Lomariopsidaceae Cheng-Wei Chen1,*, Michael Sundue2,*, Li-Yaung Kuo3, Wei-Chih Teng4, Yao-Moan Huang1 1 Division of Silviculture, Taiwan Forestry Research Institute, 53 Nan-Hai Rd., Taipei 100, Taiwan 2 The Pringle Herbarium, Department of Plant Biology, The University of Vermont, 27 Colchester Ave., Burlington, VT 05405, USA 3 Institute of Ecology and Evolutionary Biology, National Taiwan University, No. 1, Sec. 4, Roosevelt Road, Taipei, 10617, Taiwan 4 Natural photographer, 664, Hu-Shan Rd., Caotun Township, Nantou 54265, Taiwan Corresponding author: Yao-Moan Huang ([email protected]) Academic editor: T. Almeida | Received 1 February 2017 | Accepted 23 March 2017 | Published 7 April 2017 Citation: Chen C-W, Sundue M, Kuo L-Y, Teng W-C, Huang Y-M (2017) Phylogenetic analyses place the monotypic Dryopolystichum within Lomariopsidaceae. PhytoKeys 78: 83–107. https://doi.org/10.3897/phytokeys.78.12040 Abstract The monotypic fern genusDryopolystichum Copel. combines a unique assortment of characters that ob- scures its relationship to other ferns. Its thin-walled sporangium with a vertical and interrupted annulus, round sorus with peltate indusium, and petiole with several vascular bundles place it in suborder Poly- podiineae, but more precise placement has eluded previous authors. Here we investigate its phylogenetic position using three plastid DNA markers, rbcL, rps4-trnS, and trnL-F, and a broad sampling of Polypodi- ineae. -
Flora of China (1994-2013) in English, More Than 100 New Taxa of Chinese Plants Are Still Being Published Each Year
This Book is Sponsored by Shanghai Chenshan Botanical Garden 上海辰山植物园 Shanghai Chenshan Plant Science Research Center, Chinese Academy of Sciences 中国科学院上海辰山植物科学研究中心 Special Fund for Scientific Research of Shanghai Landscaping & City Appearance Administrative Bureau (G182415) 上海市绿化和市容管理局科研专项 (G182415) National Specimen Information Infrastructure, 2018 Special Funds 中国国家标本平台 2018 年度专项 Shanghai Sailing Program (14YF1413800) 上海市青年科技英才扬帆计划 (14YF1413800) Chinese Plant Names Index 2000-2009 DU Cheng & MA Jin-shuang Chinese Plant Names Index 2000-2009 中国植物名称索引 2000-2009 DU Cheng & MA Jin-shuang Abstract The first two volumes of the Chinese Plant Names Index (CPNI) cover the years 2000 through 2009, with entries 1 through 5,516, and 2010 through 2017, with entries 5,517 through 10,795. A unique entry is generated for the specific name of each taxon in a specific publication. Taxonomic treatments cover all novelties at the rank of family, genus, species, subspecies, variety, form and named hybrid taxa, new name changes (new combinations and new names), new records, new synonyms and new typifications for vascular plants reported or recorded from China. Detailed information on the place of publication, including author, publication name, year of publication, volume, issue, and page number, are given in detail. Type specimens and collections information for the taxa and their distribution in China, as well as worldwide, are also provided. The bibliographies were compiled from 182 journals and 138 monographs or books published worldwide. In addition, more than 400 herbaria preserve type specimens of Chinese plants are also listed as an appendix. This book can be used as a basic material for Chinese vascular plant taxonomy, and as a reference for researchers in biodiversity research, environmental protection, forestry and medicinal botany. -
Morphology of the Fertile Leaves of the Lomariopsidaceae, with Special Reference to the Venation by B
MORPHOLOGY OF THE FERTILE LEAVES OF THE LOMARIOPSIDACEAE, WITH SPECIAL REFERENCE TO THE VENATION BY B. K. NAYAR Pteridology Laboratory, National Botanic Gardens, Lucknow, India {Received i October 1965) SUMMARY Fertile pinnae of thirty-one species of the eight genera of Lomariopsidaceae studied have the lamina variously reduced, in some cases to narrow wings on either side of the midrib. The lamina is either broad, thin, and with the venation conspicuous on the surface, or narrow, fleshy, and with hidden venation. The mesophyll is undifferentiated and consists of thin-walled parenchyma which possesses collapsible walls in some species. Intercellular air spaces are inconspicuous in most species. The epidermal cells are usually thin-walled, chlorophyllous and dorsiventrally flattened. The midrib has two or three vascular strands which unite into one in the anterior half of the lamina. Distinct sclerenchyma tissue is absent: a few layers of thick- walled hypodermal cells occur in the midrib region in some. Venation of the fertile pinna is almost similar to that of the sterile pinnae in Bolbitis and Lomagramma (both reticulate), and in Egenolfia, Elaphoglossum and Thysanosoria (all free- veined). The fertile pinnae of Arthrobotrya, Lomariopsis and Teratophyllum usually possess a reticulate venation, though the sterile pinnae are free-veined. A set of special veins supplying the sporangia is found in addition to the 'normal' venation in many species except Elaphoglossum and Thysanosoria. The special v^enation is variously developed in the different species of each genus; it consists of a set of veins close to the lower epidermis of the lamina and connected to the 'normal' veins at intervals: in some cases the special veins form extensive reticulations independent of the 'normal' venation. -
Dryopteridaceae
This PDF version does not have an ISBN or ISSN and is not therefore effectively published (Melbourne Code, Art. 29.1). The printed version, however, was effectively published on 6 June 2013. Zhang, L. B., S. G. Wu, J. Y. Xiang, F. W. Xing, H. He, F. G. Wang, S. G. Lu, S. Y. Dong, D. S. Barrington, K. Iwatsuki, M. J. M. Christenhusz, J. T. Mickel, M. Kato & M. G. Gilbert. 2013. Dryopteridaceae. Pp. 541–724 in Z. Y. Wu, P. H. Raven & D. Y. Hong, eds., Flora of China, Vol. 2–3 (Pteridophytes). Beijing: Science Press; St. Louis: Missouri Botanical Garden Press. DRYOPTERIDACEAE 鳞毛蕨科 lin mao jue ke Zhang Libing (张丽兵)1, Wu Sugong (武素功)2, Xiang Jianying (向建英)2, Xing Fuwu (邢福武)3, He Hai (何海)4, Wang Faguo (王发国)3, Lu Shugang (陆树刚)5, Dong Shiyong (董仕勇)3; David S. Barrington6, Kunio Iwatsuki7, Maarten J. M. Christenhusz8, John T. Mickel9, Masahiro Kato10, Michael G. Gilbert11 Plants small to large, evergreen or deciduous, terrestrial, epilithic, hemiepiphytic, or epiphytic. Rhizomes erect, ascending, creeping, or sometimes climbing, dictyostelic (mostly radially), scaly; scales basally attached or very rarely peltate, often non- clathrate but sometimes clathrate, entire or dentate. Fronds caespitose or remote from one another, with segments anadromously or catadromously arranged, or sometimes anadromous at base and catadromous distally; stipe often not articulate but sometimes articu- late at base, with 3 or more vascular bundles arranged in a semicircle or circle, scaly, sulcate adaxially, not hairy or sometimes hairy; lamina monomorphic or dimorphic, usually oblong, deltoid, pentagonal, lanceolate, ovate, or linear, 1–5-pinnate, or simple, rarely imparipinnate, scaly, glandular, hairy, or glabrous; if scaly then scales bullate or flat; glands absent or present; texture thinly papery, papery, or leathery. -
Fern Phylogeny Inferred from 400 Leptosporangiate Species and Three Plastid Genes
TAXON 56 (4) • November 2007: 1037–1050 Schuettpelz & Pryer • Fern phylogeny Fern phylogeny inferred from 400 leptosporangiate species and three plastid genes Eric Schuettpelz & Kathleen M. Pryer Department of Biology, Duke University, Durham, North Carolina 27708, U.S.A. [email protected] (author for correspondence) In an effort to obtain a solid and balanced approximation of global fern phylogeny to serve as a tool for ad- dressing large-scale evolutionary questions, we assembled and analyzed the most inclusive molecular dataset for leptosporangiate ferns to date. Three plastid genes (rbcL, atpB, atpA), totaling more than 4,000 bp, were sequenced for each of 400 leptosporangiate fern species (selected using a proportional sampling approach) and five outgroups. Maximum likelihood analysis of these data yielded an especially robust phylogeny: 80% of the nodes were supported by a maximum likelihood bootstrap percentage ≥ 70. The scope of our analysis provides unprecedented insight into overall fern relationships, not only delivering additional support for the deepest leptosporangiate divergences, but also uncovering the composition of more recently emerging clades and their relationships to one another. KEYWORDS: eupolypods, leptosporangiates, molecular systematics, monilophytes, phylogenetics, polypods, tree of life collaborative study of Hasebe & al. (1995). Although this INTRODUCTION study helped answer many long-standing questions in fern An accurate and robust assessment of phylogeny is systematics (Smith, 1995), it was not without problems. fundamental to a full understanding of evolutionary ori- With about 9,000 extant species in 267 genera (Smith & gins because it provides the overall pattern of historical al., 2006b), leptosporangiate ferns are, after angiosperms, divergence—a framework for exploring both evolution the most diverse lineage of vascular plants. -
Bolbitis Lianhuachihensis (Dryopteridaceae), a New Species from Taiwan
A peer-reviewed open-access journal PhytoKeys 131: 69–81Bolbitis (2019) lianhuachihensis (Dryopteridaceae), a new species from Taiwan 69 doi: 10.3897/phytokeys.131.36548 RESEARCH ARTICLE http://phytokeys.pensoft.net Launched to accelerate biodiversity research Bolbitis lianhuachihensis (Dryopteridaceae), a new species from Taiwan Yi-Shan Chao1, Yu-Fang Huang2, Shi-Yong Dong3, Yao-Moan Huang4, Ho-Yih Liu2 1 Department of Biomedical Science & Environmental Biology, Kaohsiung Medical University, 100, Shih- Chuan 1st Rd., Kaohsiung, 80708, Taiwan 2 Department of Biological Sciences, National Sun Yat-sen Univer- sity, Kaohsiung 80424, Taiwan 3 South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China 4 Taiwan Forestry Research Institute, 53 Nan-Hai Rd., Taipei, 10066, Taiwan Corresponding author: Yi-Shan Chao ([email protected]); Ho-Yih Liu ([email protected]) Academic editor: Thais Almeida | Received 27 May 2019 | Accepted 31 July 2019 | Published 5 September 2019 Citation: Chao Y-S, Huang Y-F, Dong S-Y, Huang Y-M, Liu H-Y (2019) Bolbitis lianhuachihensis (Dryopteridaceae), a new species from Taiwan. PhytoKeys 131: 69–81. https://doi.org/10.3897/phytokeys.131.36548 Abstract A new species of Bolbitis, B. lianhuachihensis sp. nov., was found in central Taiwan. It most resembles B. virens var. compacta and B. hainanensis. A phylogenetic tree of Taiwanese and other Asian species of Bolbitis species supports the recognition of the new species. Morphologically, the combination of anasto- mosing venation and fewer sterile pinnae are critical characters to discriminate B. lianhuachihensis from other Taiwanese Bolbitis species. Bolbitis lianhuachihensis can be further distinguished from B. virens var. -
A Classification for Extant Ferns
55 (3) • August 2006: 705–731 Smith & al. • Fern classification TAXONOMY A classification for extant ferns Alan R. Smith1, Kathleen M. Pryer2, Eric Schuettpelz2, Petra Korall2,3, Harald Schneider4 & Paul G. Wolf5 1 University Herbarium, 1001 Valley Life Sciences Building #2465, University of California, Berkeley, California 94720-2465, U.S.A. [email protected] (author for correspondence). 2 Department of Biology, Duke University, Durham, North Carolina 27708-0338, U.S.A. 3 Department of Phanerogamic Botany, Swedish Museum of Natural History, Box 50007, SE-104 05 Stock- holm, Sweden. 4 Albrecht-von-Haller-Institut für Pflanzenwissenschaften, Abteilung Systematische Botanik, Georg-August- Universität, Untere Karspüle 2, 37073 Göttingen, Germany. 5 Department of Biology, Utah State University, Logan, Utah 84322-5305, U.S.A. We present a revised classification for extant ferns, with emphasis on ordinal and familial ranks, and a synop- sis of included genera. Our classification reflects recently published phylogenetic hypotheses based on both morphological and molecular data. Within our new classification, we recognize four monophyletic classes, 11 monophyletic orders, and 37 families, 32 of which are strongly supported as monophyletic. One new family, Cibotiaceae Korall, is described. The phylogenetic affinities of a few genera in the order Polypodiales are unclear and their familial placements are therefore tentative. Alphabetical lists of accepted genera (including common synonyms), families, orders, and taxa of higher rank are provided. KEYWORDS: classification, Cibotiaceae, ferns, monilophytes, monophyletic. INTRODUCTION Euphyllophytes Recent phylogenetic studies have revealed a basal dichotomy within vascular plants, separating the lyco- Lycophytes Spermatophytes Monilophytes phytes (less than 1% of extant vascular plants) from the euphyllophytes (Fig.