Jamur Polyporales Di Twa Suranadi Lombok Barat
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Phylogenetic Classification of Trametes
TAXON 60 (6) • December 2011: 1567–1583 Justo & Hibbett • Phylogenetic classification of Trametes SYSTEMATICS AND PHYLOGENY Phylogenetic classification of Trametes (Basidiomycota, Polyporales) based on a five-marker dataset Alfredo Justo & David S. Hibbett Clark University, Biology Department, 950 Main St., Worcester, Massachusetts 01610, U.S.A. Author for correspondence: Alfredo Justo, [email protected] Abstract: The phylogeny of Trametes and related genera was studied using molecular data from ribosomal markers (nLSU, ITS) and protein-coding genes (RPB1, RPB2, TEF1-alpha) and consequences for the taxonomy and nomenclature of this group were considered. Separate datasets with rDNA data only, single datasets for each of the protein-coding genes, and a combined five-marker dataset were analyzed. Molecular analyses recover a strongly supported trametoid clade that includes most of Trametes species (including the type T. suaveolens, the T. versicolor group, and mainly tropical species such as T. maxima and T. cubensis) together with species of Lenzites and Pycnoporus and Coriolopsis polyzona. Our data confirm the positions of Trametes cervina (= Trametopsis cervina) in the phlebioid clade and of Trametes trogii (= Coriolopsis trogii) outside the trametoid clade, closely related to Coriolopsis gallica. The genus Coriolopsis, as currently defined, is polyphyletic, with the type species as part of the trametoid clade and at least two additional lineages occurring in the core polyporoid clade. In view of these results the use of a single generic name (Trametes) for the trametoid clade is considered to be the best taxonomic and nomenclatural option as the morphological concept of Trametes would remain almost unchanged, few new nomenclatural combinations would be necessary, and the classification of additional species (i.e., not yet described and/or sampled for mo- lecular data) in Trametes based on morphological characters alone will still be possible. -
Three Species of Wood-Decaying Fungi in <I>Polyporales</I> New to China
MYCOTAXON ISSN (print) 0093-4666 (online) 2154-8889 Mycotaxon, Ltd. ©2017 January–March 2017—Volume 132, pp. 29–42 http://dx.doi.org/10.5248/132.29 Three species of wood-decaying fungi in Polyporales new to China Chang-lin Zhaoa, Shi-liang Liua, Guang-juan Ren, Xiao-hong Ji & Shuanghui He* Institute of Microbiology, Beijing Forestry University, No. 35 Qinghuadong Road, Haidian District, Beijing 100083, P.R. China * Correspondence to: [email protected] Abstract—Three wood-decaying fungi, Ceriporiopsis lagerheimii, Sebipora aquosa, and Tyromyces xuchilensis, are newly recorded in China. The identifications were based on morphological and molecular evidence. The phylogenetic tree inferred from ITS+nLSU sequences of 49 species of Polyporales nests C. lagerheimii within the phlebioid clade, S. aquosa within the gelatoporia clade, and T. xuchilensis within the residual polyporoid clade. The three species are described and illustrated based on Chinese material. Key words—Basidiomycota, polypore, taxonomy, white rot fungus Introduction Wood-decaying fungi play a key role in recycling nutrients of forest ecosystems by decomposing cellulose, hemicellulose, and lignin of the plant cell walls (Floudas et al. 2015). Polyporales, a large order in Basidiomycota, includes many important genera of wood-decaying fungi. Recent molecular studies employing multi-gene datasets have helped to provide a phylogenetic overview of Polyporales, in which thirty-four valid families are now recognized (Binder et al. 2013). The diversity of wood-decaying fungi is very high in China because of the large landscape ranging from boreal to tropical zones. More than 1200 species of wood-decaying fungi have been found in China (Dai 2011, 2012), and some a Chang-lin Zhao and Shi-liang Liu contributed equally to this work and share first-author status 30 .. -
9B Taxonomy to Genus
Fungus and Lichen Genera in the NEMF Database Taxonomic hierarchy: phyllum > class (-etes) > order (-ales) > family (-ceae) > genus. Total number of genera in the database: 526 Anamorphic fungi (see p. 4), which are disseminated by propagules not formed from cells where meiosis has occurred, are presently not grouped by class, order, etc. Most propagules can be referred to as "conidia," but some are derived from unspecialized vegetative mycelium. A significant number are correlated with fungal states that produce spores derived from cells where meiosis has, or is assumed to have, occurred. These are, where known, members of the ascomycetes or basidiomycetes. However, in many cases, they are still undescribed, unrecognized or poorly known. (Explanation paraphrased from "Dictionary of the Fungi, 9th Edition.") Principal authority for this taxonomy is the Dictionary of the Fungi and its online database, www.indexfungorum.org. For lichens, see Lecanoromycetes on p. 3. Basidiomycota Aegerita Poria Macrolepiota Grandinia Poronidulus Melanophyllum Agaricomycetes Hyphoderma Postia Amanitaceae Cantharellales Meripilaceae Pycnoporellus Amanita Cantharellaceae Abortiporus Skeletocutis Bolbitiaceae Cantharellus Antrodia Trichaptum Agrocybe Craterellus Grifola Tyromyces Bolbitius Clavulinaceae Meripilus Sistotremataceae Conocybe Clavulina Physisporinus Trechispora Hebeloma Hydnaceae Meruliaceae Sparassidaceae Panaeolina Hydnum Climacodon Sparassis Clavariaceae Polyporales Gloeoporus Steccherinaceae Clavaria Albatrellaceae Hyphodermopsis Antrodiella -
Anti-Staphylococcal and Antioxidant Properties of Crude Ethanolic Extracts of Macrofungi Collected from the Philippines
Pharmacogn J. 2018; 10(1):106-109 A Multifaceted Journal in the field of Natural Products and Pharmacognosy Original Article www.phcogj.com | www.journalonweb.com/pj | www.phcog.net Anti-Staphylococcal and Antioxidant Properties of Crude Ethanolic Extracts of Macrofungi Collected from the Philippines Christine May Gaylan1, John Carlo Estebal1, Ourlad Alzeus G. Tantengco2, Elena M. Ragragio1 ABSTRACT Introduction: Macrofungi have been used in the Philippines as source of food and traditional medicines. However, these macrofungi in the Philippines have not yet been studied for different biological activities. Thus, this research determined the potential antibacterial and antioxidant activities of crude ethanolic extracts of seven macrofungi collected in Bataan, Philippines. Methods: Kirby-Bauer disk diffusion assay and broth microdilution method were used to screen for the antibacterial activity and DPPH scavenging assay for the determination of antioxidant activity. Results: F. rosea, G. applanatum, G. lucidum and P. pinisitus exhibited zones of inhibition ranging from 6.55 ± 0.23 mm to 7.43 ± 0.29 mm against S. aureus, D. confragosa, F. rosea, G. lucidum, M. xanthopus and P. pinisitus showed antimicrobial activities against S. aureus with an MIC50 ranging from 1250 μg/mL to 10000 μg/mL. F. rosea, G. applanatum, G. lucidum, M. xanthopus exhibited excellent antioxidant activity with F. rosea having the highest antioxidant activity among all the extracts tested (3.0 μg/mL). Conclusion: Based on the results, these Philippine macrofungi showed antistaphylococcal activity independent of 1 Christine May Gaylan , the antioxidant activity. These can be further studied as potential sources of antibacterial and John Carlo Estebal1, antioxidant compounds. -
Polypore Diversity in North America with an Annotated Checklist
Mycol Progress (2016) 15:771–790 DOI 10.1007/s11557-016-1207-7 ORIGINAL ARTICLE Polypore diversity in North America with an annotated checklist Li-Wei Zhou1 & Karen K. Nakasone2 & Harold H. Burdsall Jr.2 & James Ginns3 & Josef Vlasák4 & Otto Miettinen5 & Viacheslav Spirin5 & Tuomo Niemelä 5 & Hai-Sheng Yuan1 & Shuang-Hui He6 & Bao-Kai Cui6 & Jia-Hui Xing6 & Yu-Cheng Dai6 Received: 20 May 2016 /Accepted: 9 June 2016 /Published online: 30 June 2016 # German Mycological Society and Springer-Verlag Berlin Heidelberg 2016 Abstract Profound changes to the taxonomy and classifica- 11 orders, while six other species from three genera have tion of polypores have occurred since the advent of molecular uncertain taxonomic position at the order level. Three orders, phylogenetics in the 1990s. The last major monograph of viz. Polyporales, Hymenochaetales and Russulales, accom- North American polypores was published by Gilbertson and modate most of polypore species (93.7 %) and genera Ryvarden in 1986–1987. In the intervening 30 years, new (88.8 %). We hope that this updated checklist will inspire species, new combinations, and new records of polypores future studies in the polypore mycota of North America and were reported from North America. As a result, an updated contribute to the diversity and systematics of polypores checklist of North American polypores is needed to reflect the worldwide. polypore diversity in there. We recognize 492 species of polypores from 146 genera in North America. Of these, 232 Keywords Basidiomycota . Phylogeny . Taxonomy . species are unchanged from Gilbertson and Ryvarden’smono- Wood-decaying fungus graph, and 175 species required name or authority changes. -
Polypore Fungi As a Flagship Group to Indicate Changes in Biodiversity – a Test Case from Estonia Kadri Runnel1* , Otto Miettinen2 and Asko Lõhmus1
Runnel et al. IMA Fungus (2021) 12:2 https://doi.org/10.1186/s43008-020-00050-y IMA Fungus RESEARCH Open Access Polypore fungi as a flagship group to indicate changes in biodiversity – a test case from Estonia Kadri Runnel1* , Otto Miettinen2 and Asko Lõhmus1 Abstract Polyporous fungi, a morphologically delineated group of Agaricomycetes (Basidiomycota), are considered well studied in Europe and used as model group in ecological studies and for conservation. Such broad interest, including widespread sampling and DNA based taxonomic revisions, is rapidly transforming our basic understanding of polypore diversity and natural history. We integrated over 40,000 historical and modern records of polypores in Estonia (hemiboreal Europe), revealing 227 species, and including Polyporus submelanopus and P. ulleungus as novelties for Europe. Taxonomic and conservation problems were distinguished for 13 unresolved subgroups. The estimated species pool exceeds 260 species in Estonia, including at least 20 likely undescribed species (here documented as distinct DNA lineages related to accepted species in, e.g., Ceriporia, Coltricia, Physisporinus, Sidera and Sistotrema). Four broad ecological patterns are described: (1) polypore assemblage organization in natural forests follows major soil and tree-composition gradients; (2) landscape-scale polypore diversity homogenizes due to draining of peatland forests and reduction of nemoral broad-leaved trees (wooded meadows and parks buffer the latter); (3) species having parasitic or brown-rot life-strategies are more substrate- specific; and (4) assemblage differences among woody substrates reveal habitat management priorities. Our update reveals extensive overlap of polypore biota throughout North Europe. We estimate that in Estonia, the biota experienced ca. 3–5% species turnover during the twentieth century, but exotic species remain rare and have not attained key functions in natural ecosystems. -
2 the Numbers Behind Mushroom Biodiversity
15 2 The Numbers Behind Mushroom Biodiversity Anabela Martins Polytechnic Institute of Bragança, School of Agriculture (IPB-ESA), Portugal 2.1 Origin and Diversity of Fungi Fungi are difficult to preserve and fossilize and due to the poor preservation of most fungal structures, it has been difficult to interpret the fossil record of fungi. Hyphae, the vegetative bodies of fungi, bear few distinctive morphological characteristicss, and organisms as diverse as cyanobacteria, eukaryotic algal groups, and oomycetes can easily be mistaken for them (Taylor & Taylor 1993). Fossils provide minimum ages for divergences and genetic lineages can be much older than even the oldest fossil representative found. According to Berbee and Taylor (2010), molecular clocks (conversion of molecular changes into geological time) calibrated by fossils are the only available tools to estimate timing of evolutionary events in fossil‐poor groups, such as fungi. The arbuscular mycorrhizal symbiotic fungi from the division Glomeromycota, gen- erally accepted as the phylogenetic sister clade to the Ascomycota and Basidiomycota, have left the most ancient fossils in the Rhynie Chert of Aberdeenshire in the north of Scotland (400 million years old). The Glomeromycota and several other fungi have been found associated with the preserved tissues of early vascular plants (Taylor et al. 2004a). Fossil spores from these shallow marine sediments from the Ordovician that closely resemble Glomeromycota spores and finely branched hyphae arbuscules within plant cells were clearly preserved in cells of stems of a 400 Ma primitive land plant, Aglaophyton, from Rhynie chert 455–460 Ma in age (Redecker et al. 2000; Remy et al. 1994) and from roots from the Triassic (250–199 Ma) (Berbee & Taylor 2010; Stubblefield et al. -
Taxonomic Study of Favolus and Neofavolus Gen. Nov. Segregated from Polyporus (Basidiomycota, Polyporales)
Taxonomic study of Favolus and Neofavolus gen. nov. segregated from Polyporus (Basidiomycota, Polyporales) Kozue Sotome, Yasunori Akagi, Su See Lee, Noemia K. Ishikawa & Tsutomu Hattori Fungal Diversity An International Journal of Mycology ISSN 1560-2745 Volume 58 Number 1 Fungal Diversity (2013) 58:245-266 DOI 10.1007/s13225-012-0213-6 1 23 Your article is protected by copyright and all rights are held exclusively by Mushroom Research Foundation. This e-offprint is for personal use only and shall not be self- archived in electronic repositories. If you wish to self-archive your work, please use the accepted author’s version for posting to your own website or your institution’s repository. You may further deposit the accepted author’s version on a funder’s repository at a funder’s request, provided it is not made publicly available until 12 months after publication. 1 23 Author's personal copy Fungal Diversity (2013) 58:245–266 DOI 10.1007/s13225-012-0213-6 Taxonomic study of Favolus and Neofavolus gen. nov. segregated from Polyporus (Basidiomycota, Polyporales) Kozue Sotome & Yasunori Akagi & Su See Lee & Noemia K. Ishikawa & Tsutomu Hattori Received: 31 July 2012 /Accepted: 24 October 2012 /Published online: 7 November 2012 # Mushroom Research Foundation 2012 Abstract We present a taxonomic study of ‘group Favolus’ clade, and revise the genus Favolus, typified by F. brasi- and related species in Polyporus. Phylogenetic analyses of liensis, for the latter clade. Neofavolus includes N. mikawai nurLSU and ITS regions revealed that the infrageneric and N. cremeoalbidus sp. nov., known only from temperate ‘group Favolus’ is divided into two main clades. -
Savez Društav Genetičara Jugoslavije
UDC 575. https://doi.org/10.2298/GENSR1802519G Original scientific paper MOLECULAR TAXONOMY AND PHYLOGENETICS OF Daedaleopsis confragosa (Bolt.: Fr.) J. Schröt. FROM WILD CHERRY IN SERBIA Vladislava GALOVIĆ1*, Miroslav MARKOVIĆ1, Predrag PAP1, Martin MULETT4, Milana RAKIĆ2, Aleksandar VASILJEVIĆ3, Saša PEKEČ1 1University of Novi Sad, Institute of Lowland Forestry and Environment, Novi Sad, Serbia 2University of Novi Sad, Faculty of Sciences, Department of Biology and Ecology, Novi Sad, Serbia 3Gljivarsko društvo Novi Sad, Novi Sad, Serbia 4Centre for Forestry and Climate Change (Centre for Forestry and Climate change Forest Research, Alice Holt Lodge Farnham Surrey GU104LH UK Galović V., M. Marković, P. Pap, M. Mulett, M. Rakić, A. Vasiljević, S. Pekeč (2018): Molecular taxonomy and phylogenetics of Daedaleopsis confragosa (Bolt.: Fr.) J. Schröt. from wild cherry in Serbia.- Genetika, Vol 50, No.2, 519-532, 2018. Daedaleopsis spp., a lignicolous fungus causes of white rot on wild cherry and other broadleaved species and makes economic losses in Serbian forestry. The paper presents results of two morphologically distinct fungi Daedaleopsis confragosa and Daedaleopsis tricolor isolated from native populations of wild cherry (Prunus avium L.) found in the sites of Protected Forests of Serbia. Morphological appearance of D. tricolor was found more abundant in comparison to D. confragosa species. Samples from Serbia were analysed using morphometric and molecular tools and compared with isolates from United Kingdom and published sequences from Sweden, Austria, Hungary, Germany, Canada, France, USA and Czech Republic to give the taxonomic insight and their genetic relatedness using fungal barcoding region ITS rDNA. Results from BLAST search confirmed morphology of the isolates to their taxonomic affiliation as D. -
Notes, Outline and Divergence Times of Basidiomycota
Fungal Diversity (2019) 99:105–367 https://doi.org/10.1007/s13225-019-00435-4 (0123456789().,-volV)(0123456789().,- volV) Notes, outline and divergence times of Basidiomycota 1,2,3 1,4 3 5 5 Mao-Qiang He • Rui-Lin Zhao • Kevin D. Hyde • Dominik Begerow • Martin Kemler • 6 7 8,9 10 11 Andrey Yurkov • Eric H. C. McKenzie • Olivier Raspe´ • Makoto Kakishima • Santiago Sa´nchez-Ramı´rez • 12 13 14 15 16 Else C. Vellinga • Roy Halling • Viktor Papp • Ivan V. Zmitrovich • Bart Buyck • 8,9 3 17 18 1 Damien Ertz • Nalin N. Wijayawardene • Bao-Kai Cui • Nathan Schoutteten • Xin-Zhan Liu • 19 1 1,3 1 1 1 Tai-Hui Li • Yi-Jian Yao • Xin-Yu Zhu • An-Qi Liu • Guo-Jie Li • Ming-Zhe Zhang • 1 1 20 21,22 23 Zhi-Lin Ling • Bin Cao • Vladimı´r Antonı´n • Teun Boekhout • Bianca Denise Barbosa da Silva • 18 24 25 26 27 Eske De Crop • Cony Decock • Ba´lint Dima • Arun Kumar Dutta • Jack W. Fell • 28 29 30 31 Jo´ zsef Geml • Masoomeh Ghobad-Nejhad • Admir J. Giachini • Tatiana B. Gibertoni • 32 33,34 17 35 Sergio P. Gorjo´ n • Danny Haelewaters • Shuang-Hui He • Brendan P. Hodkinson • 36 37 38 39 40,41 Egon Horak • Tamotsu Hoshino • Alfredo Justo • Young Woon Lim • Nelson Menolli Jr. • 42 43,44 45 46 47 Armin Mesˇic´ • Jean-Marc Moncalvo • Gregory M. Mueller • La´szlo´ G. Nagy • R. Henrik Nilsson • 48 48 49 2 Machiel Noordeloos • Jorinde Nuytinck • Takamichi Orihara • Cheewangkoon Ratchadawan • 50,51 52 53 Mario Rajchenberg • Alexandre G. -
New Records of Lignicolous Fungi Deteriorating Wood in India
Mycosphere Doi 10.5943/mycosphere/3/6/13 New records of lignicolous fungi deteriorating wood in India Nagadesi PK1* and Arya A2 *1Department of Botany, Post Graduation Section, Andhra Loyola College, Vijayawada-520008, Andhra Pradesh, India. Email: [email protected]. 2Department of Botany, Faculty of Science, The Maharaja Sayajirao University of Baroda, Vadodara – 390002, Gujarat, India. Email: [email protected] Nagadesi PK, Arya A 2012 – New records of lignicolous fungi deteriorating wood in India. Mycosphere 3(6), 997–1004, Doi 10.5943 /mycosphere/3/6/13 Wood deteriorating fungi were collected from Ratanmahal Wildlife Sanctuary (RWLS) between October 2006 and January 2011. Aurificaria indica var. leucocephala var. nov, and Microporus affinis var. glabriceps var. nov. are described and four species, Fomitopsis cupreorosea, Ganoderma curtisii, Microporus alboater and Phellinus shaferi are new reports for India. These six taxa are described and illustrated in this paper. Key words – Aurificaria indica var. leucocephala – Gujarat – Microporus affinis var glabriceps – Ratanmahal wildlife sanctuary – Wood decay fungi Article Information Received 1 November 2012 Accepted 7 November 2012 Published 31 December 2012 *Coresponding Author: Nagadesi Praveen Kumar – e-mail – [email protected] Introduction Sundararaman et al. (1924) reported several The macrofungi have perhaps the polypore from Madras. Sarbhoy et al. (1977– longest history of diversity studies of any 1981) listed more than 500 Aphyllophorales. mycota. Nevertheless, they are understudied Sarbhoy (1994) described the present status over most of the world. Taxonomic obstacles and future prospects of Mycology in India. and the absence of long-term studies prevent Bakshi (1971) published a book on Indian conclusive answers even to basic questions Polyporaceae and Sharma (1995) on about the number of species at a specific Hymenochaetaceae of India. -
Molecular Phylogeny of Polyporales from Bafut Forest, Cameroon and Their Importance to Rural Communities
Journal of Biology and Life Science ISSN 2157-6076 2019, Vol. 10, No. 2 Molecular Phylogeny of Polyporales from Bafut Forest, Cameroon and Their Importance to Rural Communities Tonjock Rosemary Kinge (Corresponding author) Department of Biological Sciences, Faculty of Science, The University of Bamenda, P.O. Box 39, Bambili, North West Region, Cameroon Email: [email protected] Azinue Clementine Lem Department of Biological Sciences, Faculty of Science, The University of Bamenda, P.O. Box 39, Bambili, North West Region, Cameroon Email: [email protected] Seino Richard Akwanjoh Department of Biological Sciences, Faculty of Science, The University of Bamenda, P.O. Box 39, Bambili, North West Region, Cameroon Email: [email protected] Received: January 9, 2019 Accepted: January 26, 2019 doi:10.5296/jbls.v10i2.14339 URL: https://doi.org/10.5296/jbls.v10i2.14339 Abstract The polyporales are a large order of pore fungi within the Basidiomycota (Kingdom Fungi). They are mostly found on decay wood with some edible and medicinal species and others causing diseases of trees. In Cameroon, the knowledge on the phylogeny of polyporales is limited, their historical uses as food, medicine, source of income and the sociological impacts are apparently threatened due to slow ethnomycology research drive. The aim of this study was to identify and determine the phylogenetic relationship of polyporales in the Bafut forest and document its uses to the local communities. DNA was extracted using CTAB method and amplified using primers ITS 1 and ITS4. Their identities were determined in GeneBank using BLAST and a phylogenetic analysis was done using MEGA version 7.