Presynaptic and Postsynaptic Scaffolds

Total Page:16

File Type:pdf, Size:1020Kb

Presynaptic and Postsynaptic Scaffolds NROXXX10.1177/1073858414523321The NeuroscientistZiv and Fisher-Lavie 523321research-article2014 Review The Neuroscientist 2014, Vol. 20(5) 439 –452 Presynaptic and Postsynaptic Scaffolds: © The Author(s) 2014 Reprints and permissions: sagepub.com/journalsPermissions.nav Dynamics Fast and Slow DOI: 10.1177/1073858414523321 nro.sagepub.com Noam E. Ziv1 and Arava Fisher-Lavie1 Abstract The development of methods to follow the dynamics of synaptic molecules in living neurons has radically altered our view of the synapse, from that of a generally static structure to that of a dynamic molecular assembly at steady state. This view holds not only for relatively labile synaptic components, such as synaptic vesicles, cytoskeletal elements, and neurotransmitter receptors, but also for the numerous synaptic molecules known as scaffolding molecules, a generic name for a diverse class of molecules that organize synaptic function in time and space. Recent studies reveal that these molecules, which confer a degree of stability to synaptic assemblies over time scales of hours and days, are themselves subject to significant dynamics. Furthermore, these dynamics are probably not without effect; wherever studied, these seem to be associated with spontaneous changes in scaffold molecule content, synaptic size, and possibly synaptic function. This review describes the dynamics exhibited by synaptic scaffold molecules, their typical time scales, and the potential implications to our understanding of synaptic function. Keywords synaptic tenacity, synaptic dynamics, synaptic scaffolds, FRAP, photoactivation Chemical synapses are sites of cell-cell contact special- held in register by trans-synaptic cell adhesion molecules ized for the rapid transmission of signals between neu- and extracellular matrix proteins. rons and their targets: muscles, glands, or other neurons. Historically, much of what was known about CNS The vast majority of synapses in mammals are found in synapses and, in particular, about AZs, and PSDs was the central nervous system (CNS), where they typically based on electron microscopy (EM). However, an explo- connect the axon of one neuron to the dendrite or soma of sive amount of discoveries has been made during the last another neuron. Synaptic transmission is a directional 20 years on the molecular composition of CNS syn- process, and this directionality is manifested in the asym- apses—on the families, types, and subtypes of molecules metric structure of the presynaptic and postsynaptic com- found at excitatory and inhibitory synapses and their pri- partments. The axonal presynaptic compartment is mary roles: receptors, scaffolding molecules, proteins characterized by the presence of dozens to hundreds of involved in membrane trafficking, posttranslational mod- neurotransmitter-filled synaptic vesicles (SVs) and by ifications, protein synthesis and degradation, and many active zones (AZs), which are specialized regions of the more. It would be fair to say, however, that during the presynaptic axonal plasma membrane where SVs dock, initial years, a major concept carried over from the era of fuse, and release neurotransmitters into the synaptic cleft EM primacy was the notion that the synapse is a struc- (Fig. 1). The AZ is characterized by an electron-dense ture—a rather rigid and static molecular organization that matrix or lattice of proteins (the cytoskeleton of the AZ can undergo change when instructed to do so by physio- [CAZ]), which is thought to define the AZ as the site of logical signals but is otherwise quite stable and SV docking and fusion. The postsynaptic reception appa- unchanging. ratus is also characterized by an electron-dense thicken- ing referred to as the postsynaptic density (PSD), the central function of which is to confine receptors of the 1Technion–Israel Institute of Technology, Haifa, Israel appropriate type in front of the AZ. At excitatory gluta- matergic synapses, PSDs are typically found at the tip of Corresponding Author: small dendritic protrusions known as dendritic spines, Noam E. Ziv, Technion–Israel Institute of Technology, Faculty of Medicine and Network Biology Research Laboratories, Fishbach whereas PSDs of inhibitory synapses are typically located Building, Technion City, Haifa 32000, Israel on dendritic shafts or cell bodies. The PSD and CAZ are Email: [email protected] Downloaded from nro.sagepub.com at TECHNION 34965 IND on November 3, 2015 440 The Neuroscientist 20(5) Zhang 2009; Gundelfinger and Fejtova 2012; Kneussel and Loebrich 2007; Sheng and Hoogenraad 2007; Südhof 2012; Verpelli and others 2012). Instead, the review will discuss the dynamics of these molecules, the relation- ships of these dynamics with those of other molecules (such as neurotransmitter receptors), the relationships with other processes such as protein synthesis and degra- dation, and finally, the functional implications that these dynamics might have on synaptic function. The Active Zone Presynaptic sites in the mammalian CNS typically appear as small varicosities (presynaptic boutons) distributed along axons (en passant synapses) in an irregular, near- random fashion (Hellwig and others 1994; Shepherd and others 2002 and references within) or, less commonly, at Figure 1. A schematic illustration of a mammalian central the tip of axonal branchlets. When observed at the EM nervous system, en passant glutamatergic synapse. The level, presynaptic boutons are found to contain clusters of presynaptic active zone, including molecules of the cytoskeleton SVs, opposed to the specialized region of the presynaptic 2+ of the active zone, voltage-gated Ca channels, and docked plasma membrane known as the AZ. In mammalian CNS vesicles, is shaded in gray. The active zone is juxtaposed and synapses, AZs are disc-like structures with diameters of connected to the postsynaptic density (PSD), located at the approximately 200 to 500 nm. The AZ is surrounded by a tip of a dendritic spine, via adhesion molecule pairs. Glutamate receptors are concentrated in the postsynaptic membrane via perisynaptic zone, which seems to be the major site of interactions with PSD scaffolding molecules. endocytosis, the essential regenerative upstroke of the SV cycle. Moreover, EM studies suggest that en passant pre- synaptic boutons lack obvious physical barriers that sepa- The advent of methods that allowed one to study the rate their contents from the cytoplasm and membrane of molecular dynamics of synaptic molecules, from large the axon proper (Shepherd and Harris 1998) or from those populations of synaptic molecules to single molecules of neighboring boutons. The lack of such barriers would within and outside of synapses, as well as long-term seem to challenge the ability of individual synapses to pre- imaging methodologies that allowed synapses to be fol- serve their complement of presynaptic molecules and SVs. lowed for many hours and days, has radically altered this Moreover, both spontaneous and, in particular, evoked notion (Choquet and Triller 2013). It is now clear that neurotransmitter release are associated with tremendous synapses are not structures in a strict sense but dynamic membrane trafficking, which involves SV mobilization, molecular assemblies at complex steady states, with syn- exocytosis, endocytosis, and SV reformation, suggesting aptic molecules moving in, out, and between synapses that activity further exacerbates this challenge. over a variety of time scales—from subseconds to The advent of new imaging techniques has allowed hours—and with synaptic compartments changing their these dynamics to be studied in living neurons and to eval- instantaneous contents and probably their fine functional uate how well this challenge is addressed. In this respect, characteristics on similar and longer time scales. several key techniques proved to be most valuable (Box 1). The main focus of this review is to describe the key Most of these are based on 1) the expression of fusion pro- concepts that have emerged over the last years concern- teins of specific synaptic molecules and green fluorescent ing the dynamic nature of synapses in the mammalian protein (GFP), one of its spectral variants or photoactivat- CNS. Specifically, the review will focus on synaptic able/photoswitchable derivatives; 2) confined photo- molecular complexes that are generally referred to as bleaching or photoactivation; and 3) time-lapse imaging synaptic scaffolds due to the roles that these are believed for monitoring changes in the fluorescence of these mole- to play in organizing presynaptic and postsynaptic orga- cules at individual synapses or changes in the distribution nization on a molecular scale. This generic role assign- of the fluorescently tagged molecules among nearby syn- ment clearly does not do justice to the specific properties apses (Kim and others 2010; Okabe 2012). and functions of these molecules; however, a comprehen- A large series of experiments using these and related sive review of their particular functions will not be pro- methods has revealed that under baseline conditions, vided here, and the reader is invited to refer to several SVs, traveling as individual vesicles or small packets, as recent reviews on these topics if so desired (Feng and well as SV-associated molecules, are continuously Downloaded from nro.sagepub.com at TECHNION 34965 IND on November 3, 2015 Ziv and Fisher-Lavie 441 Box 1. Measuring the Dynamics of Synaptic Scaffold Molecules (A) Fluorescence recovery after photobleaching. This illustration shows
Recommended publications
  • Do Thin Spines Learn to Be Mushroom Spines That Remember? Jennifer Bourne and Kristen M Harris
    CONEUR-488; NO OF PAGES 6 Do thin spines learn to be mushroom spines that remember? Jennifer Bourne and Kristen M Harris Dendritic spines are the primary site of excitatory input on most or whether they instead switch shapes depending on principal neurons. Long-lasting changes in synaptic activity are synaptic plasticity during learning. accompanied by alterations in spine shape, size and number. The responsiveness of thin spines to increases and decreases Maturation and stabilization of spines in synaptic activity has led to the suggestion that they are Spines tend to stabilize with maturation [5]; however, a ‘learning spines’, whereas the stability of mushroom spines small proportion continues to turnover in more mature suggests that they are ‘memory spines’. Synaptic brains [5–7]. The transient spines are thin spines that enhancement leads to an enlargement of thin spines into emerge and disappear over a few days, whereas mush- mushroom spines and the mobilization of subcellular resources room spines can persist for months [5,6]. Mushroom to potentiated synapses. Thin spines also concentrate spines have larger postsynaptic densities (PSDs) [1], biochemical signals such as Ca2+, providing the synaptic which anchor more AMPA glutamate receptors and make specificity required for learning. Determining the mechanisms these synapses functionally stronger [8–12]. Mushroom that regulate spine morphology is essential for understanding spines are more likely than thin spines to contain smooth the cellular changes that underlie learning and memory. endoplasmic reticulum, which can regulate Ca2+ locally [13], and spines that have larger synapses are also more Addresses Center for Learning and Memory, Department of Neurobiology, likely to contain polyribosomes for local protein synthesis University of Texas, Austin, TX 78712-0805, USA [14].
    [Show full text]
  • Modular Transport of Postsynaptic Density-95 Clusters and Association with Stable Spine Precursors During Early Development of Cortical Neurons
    The Journal of Neuroscience, December 1, 2001, 21(23):9325–9333 Modular Transport of Postsynaptic Density-95 Clusters and Association with Stable Spine Precursors during Early Development of Cortical Neurons Oliver Prange,1 and Timothy H. Murphy1,2 Kinsmen Laboratory, Departments of 1Psychiatry and 2Physiology, University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z3 The properties of filopodia and spines and their association spine membranes can move. Although processes bearing clus- with the postsynaptic density (PSD) protein PSD-95 were stud- ters were generally stable, in 8 DIV neurons, we observed that ied during early development of cultured cortical neurons using a subset (ϳ10%) of PSD-95/GFP clusters underwent rapid time-lapse confocal microscopy. Neurons were transfected modular translocation between filopodia–spines and dendritic with recombinant PSD-95 constructs fused to green fluores- shafts. We conclude that, during early synaptic maturation, cent protein (GFP) for, on average, either 8 d in vitro (DIV) or 14 prefabricated PSD-95 clusters are trafficked in a developmen- DIV. We find that, during 1 hr of imaging, filopodia and spines tally regulated process that is associated with filopodial stabi- bearing PSD-95/GFP clusters are significantly more stable (i.e., lization and synapse formation. do not turnover) than those lacking clusters. When present within a spine precursor, a PSD-95/GFP cluster appeared to Key words: development; dendritic spine; filopodium; gluta- nucleate a relatively stable structure around which filopodium– mate receptor; NMDA receptor; PSD-95 The postsynaptic density (PSD) protein PSD-95 is a founding associated protein) via GK] can tether PSD-95 and its binding member of the growing superfamily of PDZ (PSD-95–Disks partners to the intracellular tubulin and actin lattice, respectively large–zona occludens1/2) domain-containing proteins (Craven (Scannevin and Huganir, 2000).
    [Show full text]
  • Gathering at the Nodes
    RESEARCH HIGHLIGHTS GLIA Gathering at the nodes Saltatory conduction — the process by which that are found at the nodes of Ranvier, where action potentials propagate along myelinated they interact with Na+ channels. When the nerves — depends on the fact that voltage- authors either disrupted the localization of gated Na+ channels form clusters at the nodes gliomedin by using a soluble fusion protein of Ranvier, between sections of the myelin that contained the extracellular domain of sheath. New findings from Eshed et al. show neurofascin, or used RNA interference to that Schwann cells produce a protein called suppress the expression of gliomedin, the gliomedin, and that this is responsible for characteristic clustering of Na+ channels at the clustering of these channels. the nodes of Ranvier did not occur. The formation of the nodes of Ranvier is Aggregation of the domain of gliomedin specified by the myelinating cells, not the that binds neurofascin and NrCAM on the axons, and an important component of this surface of purified neurons also caused process in the peripheral nervous system the clustering of neurofascin, Na+ channels is the extension of microvilli by Schwann and other nodal proteins. These findings cells. These microvilli contact the axons at support a model in which gliomedin on the nodes, and it is here that the Schwann References and links Schwann cell microvilli binds to neurofascin ORIGINAL RESEARCH PAPER Eshed, Y. et al. Gliomedin cells express the newly discovered protein and NrCAM on axons, causing them to mediates Schwann cell–axon interaction and the molecular gliomedin. cluster at the nodes of Ranvier, and leading assembly of the nodes of Ranvier.
    [Show full text]
  • Functional Consequences of Synapse Remodeling Following Astrocyte-Specific Regulation of Ephrin-B1 in the Adult Hippocampus
    5710 • The Journal of Neuroscience, June 20, 2018 • 38(25):5710–5726 Cellular/Molecular Functional Consequences of Synapse Remodeling Following Astrocyte-Specific Regulation of Ephrin-B1 in the Adult Hippocampus Jordan Koeppen,1,2* XAmanda Q. Nguyen,1,3* Angeliki M. Nikolakopoulou,1 XMichael Garcia,1 XSandy Hanna,1 Simone Woodruff,1 Zoe Figueroa,1 XAndre Obenaus,4 and XIryna M. Ethell1,2,3 1Division of Biomedical Sciences, University of California Riverside School of Medicine, Riverside, California 92521, 2Cell, Molecular, and Developmental Biology Graduate program, University of California Riverside, California, 92521, 3Neuroscience Graduate Program, University of California Riverside, Riverside, California 92521, and 4Department of Pediatrics, University of California Irvine, Irvine, California 92350 Astrocyte-derived factors can control synapse formation and functions, making astrocytes an attractive target for regulating neuronal circuits and associated behaviors. Abnormal astrocyte-neuronal interactions are also implicated in neurodevelopmental disorders and neurodegenera- tive diseases associated with impaired learning and memory. However, little is known about astrocyte-mediated mechanisms that regulate learning and memory. Here, we propose astrocytic ephrin-B1 as a regulator of synaptogenesis in adult hippocampus and mouse learning behaviors. We found that astrocyte-specific ablation of ephrin-B1 in male mice triggers an increase in the density of immature dendritic spines and excitatory synaptic sites in the adult CA1 hippocampus. However, the prevalence of immature dendritic spines is associated with decreased evoked postsynaptic firing responses in CA1 pyramidal neurons, suggesting impaired maturation of these newly formed and potentially silent synapses or increased excitatory drive on the inhibitory neurons resulting in the overall decreased postsynaptic firing.
    [Show full text]
  • Activity in Grafted Human Ips Cell–Derived Cortical Neurons Integrated in Stroke-Injured Rat Brain Regulates Motor Behavior
    Activity in grafted human iPS cell–derived cortical neurons integrated in stroke-injured rat brain regulates motor behavior Sara Palma-Tortosaa,1, Daniel Torneroa,b,1, Marita Grønning Hansena, Emanuela Monnia, Mazin Hajya, Sopiko Kartsivadzea,c, Sibel Aktaya, Oleg Tsupykovd,e, Malin Parmarf, Karl Deisserothg, Galyna Skibod,e, Olle Lindvalla, and Zaal Kokaiaa,2 aLaboratory of Stem Cells and Restorative Neurology, Lund Stem Cell Center, Lund University, SE-22184 Lund, Sweden; bLaboratory of Stem Cells and Regenerative Medicine, Institute of Neurosciences, University of Barcelona, ES-08036 Barcelona, Spain; cDepartment of Neurology, Iv. Javakhishvili Tbilisi State University, 0179 Tbilisi, Georgia; dDepartment of Cytology, Bogomoletz Institute of Physiology, 01024 Kyiv, Ukraine; eLaboratory of Cell and Tissue Cultures, State Institute of Genetic and Regenerative Medicine, 04114 Kyiv, Ukraine; fDevelopmental and Regenerative Neurobiology, Department of Experimental Medical Science, Lund Stem Cell Center, Lund University, SE-22184 Lund, Sweden; and gDepartment of Bioengineering, Stanford University, Stanford, CA 94305 Edited by Anders Björklund, Lund University, Lund, Sweden, and approved March 9, 2020 (received for review January 14, 2020) Stem cell transplantation can improve behavioral recovery after induced pluripotent stem (iPS) cells, into the cerebral cortex ad- stroke in animal models but whether stem cell–derived neurons jacent to an ischemic lesion induced by distal middle cerebral become functionally integrated into stroke-injured brain circuitry artery occlusion (dMCAO) leads to improvement of sensorimotor is poorly understood. Here we show that intracortically grafted deficits (7). Grafted neurons receive synaptic inputs from thala- human induced pluripotent stem (iPS) cell–derived cortical neurons mocortical afferents in the stroke-affected host brain (8) and alter send widespread axonal projections to both hemispheres of rats their activity in response to physiological sensory stimuli.
    [Show full text]
  • Regional Diversity in the Postsynaptic Proteome of the Mouse Brain
    bioRxiv preprint doi: https://doi.org/10.1101/368910; this version posted July 13, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Regional diversity in the postsynaptic proteome of the mouse brain Marcia Roy1*, Oksana Sorokina2*, Colin McLean2, Silvia Tapia-González3, Javier DeFelipe3, J. Douglas Armstrong2 and Seth G. N. Grant1 * equal contribution Author Affiliations: 1. Centre for Clinical Brain Sciences, University of Edinburgh, Edinburgh EH16 4SB, United Kingdom 2. School of Informatics, University of Edinburgh, Edinburgh EH8 9AB, United Kingdom 3. Instituto Cajal (CSIC), Ave. Dr. Arce 37, 28002 Madrid, Spain Correspondence: [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/368910; this version posted July 13, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Abstract: The proteome of the postsynaptic terminal of excitatory synapses comprises over one thousand proteins in vertebrate species and plays a central role in behavior and brain disease. The brain is organized into anatomically distinct regions and whether the synapse proteome differs across these regions is poorly understood. Postsynaptic proteomes were isolated from seven forebrain and hindbrain regions in mice and their composition determined using proteomic mass spectrometry. Seventy-four percent of proteins showed differential expression and each region displayed a unique compositional signature.
    [Show full text]
  • Oligomeric Amyloid Associates with Postsynaptic Densities And
    Oligomeric amyloid ␤ associates with postsynaptic densities and correlates with excitatory synapse loss near senile plaques Robert M. Koffiea, Melanie Meyer-Luehmanna,b, Tadafumi Hashimotoa, Kenneth W. Adamsa, Matthew L. Mielkea, Monica Garcia-Allozaa, Kristina D. Michevac, Stephen J. Smithc, M. Leo Kimd, Virginia M. Leed, Bradley T. Hymana, and Tara L. Spires-Jonesa,1 aNeurology Department, Massachusetts General Hospital, Charlestown, MA 02129; bDepartment of Biochemistry, Laboratory for Neurodegenerative Disease Research, Ludwig-Maximilians-University, 80336 Munich, Germany; cDepartment of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA 94305; and dDepartment of Pathology and Laboratory Medicine, University of Pennsylvania, Philadelphia, PA 19104 Edited by Floyd E. Bloom, The Scripps Research Institute, La Jolla, CA, and approved January 5, 2009 (received for review November 21, 2008) Synapse loss correlates with a cognitive decline in Alzheimer’s disease conventional light, confocal, and multiphoton microscopy, causing (AD), but whether this is caused by fibrillar deposits known as senile conventional methods to overestimate synapse density and make it plaques or soluble oligomeric forms of amyloid ␤ (A␤) is controversial. difficult, if not impossible, to detect subtle differences in synapse By using array tomography, a technique that combines ultrathin density and composition. We circumvent these problems by exam- sectioning of tissue with immunofluorescence, allowing precise quan- ining synapse density and the interaction of oligomeric A␤ with tification of small structures, such as synapses, we have tested the synaptic proteins with a new imaging technique called array to- hypothesis that oligomeric A␤ surrounding plaques contributes to mography (12). Using this technique, we quantitatively assess synapse loss in a mouse model of AD.
    [Show full text]
  • This Is an Author Produced Version of a Paper Published in the European Journal of Neuroscience
    This is an author produced version of a paper published in The European Journal of Neuroscience. This paper has been peer-reviewed but does not include the final publisher proof-corrections or journal pagination. Citation for the published paper: Larsson, Max and Broman, Jonas "Different basal levels of CaMKII phosphorylated at Thr at nociceptive and low-threshold primary afferent synapses." Eur J Neurosci. 2005 May;21(9):2445-58. http://dx.doi.org/10.1111/j.1460-9568.2005.04081.x Access to the published version may require journal subscription. Published with permission from: Blackwell Synergy Different basal levels of CaMKII phosphorylated at Thr286/287 at nociceptive and low-threshold primary afferent synapses Max Larsson and Jonas Broman Department of Experimental Medical Science, Division for Neuroscience, Lund University, BMC F10, SE-221 84 Lund, Sweden Corresponding author: Max Larsson Department of Experimental Medical Science, BMC F10, SE-221 84 Lund, Sweden Fax: +46-46-222 45 46 E-mail: [email protected] No. of pages: 57 No. of figures: 10 No. of tables: 3 No. of words in manuscript: 10 749 No. of words in Abstract: 246 No. of words in Introduction: 489 Abbreviated title: Autophosphorylated CaMKII in the dorsal horn Keywords: pain; hyperalgesia; electron microscopy; rat Abstract Postsynaptic autophosphorylation of Ca2+/calmodulin-dependent protein kinase II (CaMKII) at Thr286/287 is crucial for the induction of long-term potentiation at many glutamatergic synapses and has also been implicated in the persistence of synaptic potentiation. However, the availability of CaMKII phosphorylated at Thr286/287 at individual glutamatergic synapses in vivo is unclear.
    [Show full text]
  • Molecular Domains of Myelinated Axons Elior Peles* and James L Salzer†
    558 Molecular domains of myelinated axons Elior Peles* and James L Salzer† Myelinated axons are organized into specific domains as the Introduction result of interactions with glial cells. Recently, distinct protein Myelinated fibers are organized into distinct domains: the complexes of cell adhesion molecules, Na+ channels and node of Ranvier, the paranodal and juxtaparanodal regions, ankyrin G at the nodes, Caspr and contactin in the and the internode [1,2•]. This domain organization (shown paranodes, and K+ channels and Caspr2 in the schematically in Figures 1 and 2) is critical for the efficient juxtaparanodal region have been identified, and new insights conduction of nerve impulses via saltatory conduction and into the role of the paranodal junctions in the organization of results from complex and poorly understood interactions these domains have emerged. between axons and myelinating glial cells. Recent studies have clarified the unique molecular composition of these Addresses axonal domains, demonstrating the presence of several *Department of Molecular Cell Biology, The Weizmann Institute of protein complexes which include Na+ channels, ankyrin G Science, Rehovot 76100, Israel; e-mail: [email protected] and cell adhesion molecules (CAMs) at the nodes, con- † Departments of Cell Biology and Neurology, New York University tactin-associated protein (Caspr) and contactin at the Medical Center, New York, NY 10016, USA; + e-mail: [email protected] paranodes, and K channels and Caspr2 at the juxtaparan- odal region. As discussed below, these studies provide new Current Opinion in Neurobiology 2000, 10:558–565 insights into the generation and maintenance of functional domains along myelinated axons.
    [Show full text]
  • Identification of Proteins in the Postsynaptic Density Fraction By
    View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Caltech Authors The Journal of Neuroscience, June 1, 2000, 20(11):4069–4080 Identification of Proteins in the Postsynaptic Density Fraction by Mass Spectrometry Randall S. Walikonis,1 Ole N. Jensen,2 Matthias Mann,2 D. William Provance Jr,3 John A. Mercer,3 and Mary B. Kennedy1 1Division of Biology, California Institute of Technology, Pasadena, California 91125, 2European Molecular Biology Laboratory, D69012 Heidelberg, Germany, and 3McLaughlin Research Institute, Great Falls, Montana 59405-4900 Our understanding of the organization of postsynaptic signaling involved in vesicle trafficking, and the mammalian homolog of systems at excitatory synapses has been aided by the identi- the yeast septin protein cdc10, which is important for bud fication of proteins in the postsynaptic density (PSD) fraction, a formation in yeast. Both myosin-Va and cdc10 are threefold to subcellular fraction enriched in structures with the morphology fivefold enriched in the PSD fraction over brain homogenates. of PSDs. In this study, we have completed the identification of Immunocytochemical localization of myosin-Va in cultured hip- most major proteins in the PSD fraction with the use of an pocampal neurons shows that it partially colocalizes with analytical method based on mass spectrometry coupled with PSD-95 at synapses and is also diffusely localized in cell bod- searching of the protein sequence databases. At least one ies, dendrites, and axons. Cdc10 has a punctate distribution in protein in each of 26 prominent protein bands from the PSD cell bodies and dendrites, with some of the puncta colocalizing fraction has now been identified.
    [Show full text]
  • Pluripotent Stem Cell-Derived Cerebral Organoids Reveal Human Oligodendrogenesis with Dorsal and Ventral Origins Hyosung Kim1, R
    bioRxiv preprint doi: https://doi.org/10.1101/460907; this version posted March 23, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Pluripotent Stem Cell-derived Cerebral Organoids Reveal Human Oligodendrogenesis with 2 Dorsal and Ventral Origins 3 4 Hyosung Kim1, Ranjie Xu1, Padmashri Ragunathan2, Anna Dunaevsky2, Ying Liu3,4, Cheryl F. Dreyfus5, 5 Peng Jiang1 ,* 6 7 1Department of Cell Biology and Neuroscience, Rutgers University, Piscataway, NJ 08854, USA 8 2Department of Developmental Neuroscience, Munroe-Meyer Institute, University of Nebraska Medical 9 Center, Omaha, NE 68198, USA 10 3Department of Neurosurgery, University of Texas Health Science Center at Houston, Houston, TX 11 77030, USA. 12 4Center for Stem Cell and Regenerative Medicine, the Brown Foundation Institute of Molecular 13 Medicine for the Prevention of Human Diseases, University of Texas Health Science Center at Houston, 14 Houston, TX 77030, USA. 15 5Department of Neuroscience and Cell Biology, Rutgers Robert Wood Johnson Medical School, 16 Piscataway, NJ 08854, USA 17 18 19 20 21 22 23 24 25 *Address correspondence to: 26 Peng Jiang, Ph.D. 27 Assistant Professor 28 Department of Cell Biology and Neuroscience 29 Rutgers University 30 604 Allison Road, Piscataway, NJ 08854 31 Email: [email protected] 32 Phone: 848-445-2805 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 1 bioRxiv preprint doi: https://doi.org/10.1101/460907; this version posted March 23, 2019.
    [Show full text]
  • Spine Dynamics of PSD-95-Deficient Neurons in the Visual Cortex Link Silent Synapses to Structural Cortical Plasticity
    Spine dynamics of PSD-95-deficient neurons in the visual cortex link silent synapses to structural cortical plasticity Rashad Yusifova,b,c, Anja Tippmanna,c, Jochen F. Staigerb,d, Oliver M. Schlüterb,e,f,1, and Siegrid Löwela,b,c,1,2 aDepartment of Systems Neuroscience, Johann Friedrich Blumenbach Institut für Zoologie und Anthropologie, Universität Göttingen, D-37075 Göttingen, Germany; bCollaborative Research Center 889, Universität Göttingen, D-37075 Göttingen, Germany; cCampus Institute for Dynamics of Biological Networks, Universität Göttingen, D-37075 Göttingen, Germany; dInstitute for Neuroanatomy, University Medical Center, Universität Göttingen, D-37075 Göttingen, Germany; eDepartment of Neuroscience, University of Pittsburgh, Pittsburgh, PA 15260; and fDepartment of Psychiatry and Psychotherapy, University Medical Center Göttingen, Universität Göttingen, D-37075 Göttingen, Germany Edited by Michael P. Stryker, University of California San Francisco Medical Center, San Francisco, CA, and approved January 29, 2021 (received for review October 30, 2020) Critical periods (CPs) are time windows of heightened brain plasticity synapses are preferential substrates for spine elimination during during which experience refines synaptic connections to achieve CPs remains to be investigated. mature functionality. At glutamatergic synapses on dendritic spines In juvenile mice (postnatal days [P] 20 to 35), a brief mon- of principal cortical neurons, the maturation is largely governed by ocular deprivation (MD) of the dominant contralateral eye re- postsynaptic density protein-95 (PSD-95)-dependent synaptic incor- sults in a shift of the ocular dominance (OD) of binocular poration of α-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid neurons in V1 toward the open eye, mediated by a reduction of (AMPA) receptors into nascent AMPA-receptor silent synapses.
    [Show full text]