Burkholderia Cepacia Complex: Emerging Multihost Pathogens Equipped with a Wide Range of Virulence Factors and Determinants
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Iron Transport Strategies of the Genus Burkholderia
Zurich Open Repository and Archive University of Zurich Main Library Strickhofstrasse 39 CH-8057 Zurich www.zora.uzh.ch Year: 2015 Iron transport strategies of the genus Burkholderia Mathew, Anugraha Posted at the Zurich Open Repository and Archive, University of Zurich ZORA URL: https://doi.org/10.5167/uzh-113412 Dissertation Published Version Originally published at: Mathew, Anugraha. Iron transport strategies of the genus Burkholderia. 2015, University of Zurich, Faculty of Science. Iron transport strategies of the genus Burkholderia Dissertation zur Erlangung der naturwissenschaftlichen Doktorwürde (Dr. sc. nat.) vorgelegt der Mathematisch-naturwissenschaftlichen Fakultät der Universität Zürich von Anugraha Mathew aus Indien Promotionskomitee Prof. Dr. Leo Eberl (Vorsitz) Prof. Dr. Jakob Pernthaler Dr. Aurelien carlier Zürich, 2015 2 Table of Contents Summary .............................................................................................................. 7 Zusammenfassung ................................................................................................ 9 Abbreviations ..................................................................................................... 11 Chapter 1: Introduction ....................................................................................... 14 1.1.Role and properties of iron in bacteria ...................................................................... 14 1.2.Iron transport mechanisms in bacteria ..................................................................... -
Broad-Spectrum Antimicrobial Activity by Burkholderia Cenocepacia Tatl-371, a Strain Isolated from the Tomato Rhizosphere
RESEARCH ARTICLE Rojas-Rojas et al., Microbiology DOI 10.1099/mic.0.000675 Broad-spectrum antimicrobial activity by Burkholderia cenocepacia TAtl-371, a strain isolated from the tomato rhizosphere Fernando Uriel Rojas-Rojas,1 Anuar Salazar-Gómez,1 María Elena Vargas-Díaz,1 María Soledad Vasquez-Murrieta, 1 Ann M. Hirsch,2,3 Rene De Mot,4 Maarten G. K. Ghequire,4 J. Antonio Ibarra1,* and Paulina Estrada-de los Santos1,* Abstract The Burkholderia cepacia complex (Bcc) comprises a group of 24 species, many of which are opportunistic pathogens of immunocompromised patients and also are widely distributed in agricultural soils. Several Bcc strains synthesize strain- specific antagonistic compounds. In this study, the broad killing activity of B. cenocepacia TAtl-371, a Bcc strain isolated from the tomato rhizosphere, was characterized. This strain exhibits a remarkable antagonism against bacteria, yeast and fungi including other Bcc strains, multidrug-resistant human pathogens and plant pathogens. Genome analysis of strain TAtl-371 revealed several genes involved in the production of antagonistic compounds: siderophores, bacteriocins and hydrolytic enzymes. In pursuit of these activities, we observed growth inhibition of Candida glabrata and Paraburkholderia phenazinium that was dependent on the iron concentration in the medium, suggesting the involvement of siderophores. This strain also produces a previously described lectin-like bacteriocin (LlpA88) and here this was shown to inhibit only Bcc strains but no other bacteria. Moreover, a compound with an m/z 391.2845 with antagonistic activity against Tatumella terrea SHS 2008T was isolated from the TAtl-371 culture supernatant. This strain also contains a phage-tail-like bacteriocin (tailocin) and two chitinases, but the activity of these compounds was not detected. -
DISSERTAÇÃO Josineide Neri Monteiro.Pdf
UNIVERSIDADE FEDERAL DE PERNAMBUCO CENTRO DE TECNOLOGIA E GEOCIÊNCIAS DEPARTAMENTO DE ENGENHARIA BIOMÉDICA PROGRAMA DE PÓS-GRADUAÇÃO EM ENGENHARIA BIOMÉDICA JOSINEIDE NERI MONTEIRO IDENTIFICAÇÃO DE BACTÉRIAS DO COMPLEXO Burkholderia cepacia ATRAVÉS DE UTILIZAÇÃO DE FERRAMENTAS COMPUTACIONAIS RECIFE 2017 JOSINEIDE NERI MONTEIRO IDENTIFICAÇÃO DE BACTÉRIAS DO COMPLEXO Burkholderia cepacia ATRAVÉS DE UTILIZAÇÃO DE FERRAMENTAS COMPUTACIONAIS Dissertação apresentada ao Programa de Pós-Graduação em Engenharia Biomédica (PPGEB), da Universidade Federal de Pernambuco (UFPE), como requisito parcial para a obtenção do título de Mestre em Engenharia Biomédica. Área de concentração: Computação Biomédica Linha de pesquisa: Inteligência Artificial e Sistemas Inteligentes ORIENTADOR: Ricardo Yara RECIFE 2017 Catalogação na fonte Bibliotecária Margareth Malta, CRB-4 / 1198 M775i Monteiro, Josineide Neri. Identificação de bactérias do complexo Burkholderia cepacia através de utilização de ferramentas computacionais / Josineide Neri Monteiro. - 2017. 75 folhas, il., gráfs., tabs. Orientador: Prof. Dr. Ricardo Yara. Dissertação (Mestrado) – Universidade Federal de Pernambuco. CTG. Programa de Pós-Graduação em Engenharia Biomédica, 2017. Inclui Referências e Apêndices. 1. Engenharia Biomédica. 2. Burkholderia. 3. Bioinformática. 4. Alinhamento genético. 5. Algoritmos genéticos. 6. Taxonomia. I. Yara, Ricardo. (Orientador). II. Título. UFPE 610.28 CDD (22. ed.) BCTG/2017-299 JOSINEIDE NERI MONTEIRO IDENTIFICAÇÃO DE BACTÉRIAS DO COMPLEXO Burkholderia Cepacia ATRAVÉS DE UTILIZAÇÃO DE FERRAMENTAS COMPUTACIONAIS Esta dissertação foi julgada adequada para a obtenção do título de Mestre em Engenharia Biomédica e aprovada em sua forma final pelo Orientador e pela Banca Examinadora. Orientador: ____________________________________ Prof. Dr. Ricardo Yara (Doutor pela Universidade de São Paulo – São Paulo , Brasil) Banca Examinadora: Prof. Dr. Ricardo Yara, UFPE Doutor pela Universidade de São Paulo – São Paulo, Brasil Prof. -
Horizontal Gene Transfer to a Defensive Symbiont with a Reduced Genome
bioRxiv preprint doi: https://doi.org/10.1101/780619; this version posted September 24, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Horizontal gene transfer to a defensive symbiont with a reduced genome 2 amongst a multipartite beetle microbiome 3 Samantha C. Waterwortha, Laura V. Flórezb, Evan R. Reesa, Christian Hertweckc,d, 4 Martin Kaltenpothb and Jason C. Kwana# 5 6 Division of Pharmaceutical Sciences, School of Pharmacy, University of Wisconsin- 7 Madison, Madison, Wisconsin, USAa 8 Department of Evolutionary Ecology, Institute of Organismic and Molecular Evolution, 9 Johannes Gutenburg University, Mainz, Germanyb 10 Department of Biomolecular Chemistry, Leibniz Institute for Natural Products Research 11 and Infection Biology, Jena, Germanyc 12 Department of Natural Product Chemistry, Friedrich Schiller University, Jena, Germanyd 13 14 #Address correspondence to Jason C. Kwan, [email protected] 15 16 17 18 1 bioRxiv preprint doi: https://doi.org/10.1101/780619; this version posted September 24, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 19 ABSTRACT 20 The loss of functions required for independent life when living within a host gives rise to 21 reduced genomes in obligate bacterial symbionts. Although this phenomenon can be 22 explained by existing evolutionary models, its initiation is not well understood. -
Molecular Study of the Burkholderia Cenocepacia Division Cell Wall Operon and Ftsz Interactome As Targets for New Drugs
Università degli Studi di Pavia Dipartimento di Biologia e Biotecnologie “L. Spallanzani” Molecular study of the Burkholderia cenocepacia division cell wall operon and FtsZ interactome as targets for new drugs Gabriele Trespidi Dottorato di Ricerca in Genetica, Biologia Molecolare e Cellulare XXXIII Ciclo – A.A. 2017-2020 Università degli Studi di Pavia Dipartimento di Biologia e Biotecnologie “L. Spallanzani” Molecular study of the Burkholderia cenocepacia division cell wall operon and FtsZ interactome as targets for new drugs Gabriele Trespidi Supervised by Prof. Edda De Rossi Dottorato di Ricerca in Genetica, Biologia Molecolare e Cellulare XXXIII Ciclo – A.A. 2017-2020 Cover image: representation of the Escherichia coli division machinery. Created by Ornella Trespidi A tutta la mia famiglia e in particolare a Diletta Table of contents Abstract ..................................................................................................... 1 Abbreviations ............................................................................................ 3 1. Introduction ........................................................................................... 5 1.1 Cystic fibrosis 5 1.1.1 CFTR defects in CF 5 1.1.2 Pathophysiology of CF 7 1.1.3 CFTR modulator therapies 11 1.2 CF-associated lung infections 12 1.2.1 Pseudomonas aeruginosa 13 1.2.2 Staphylococcus aureus 14 1.2.3 Stenotrophomonas maltophilia 15 1.2.4 Achromobacter xylosoxidans 16 1.2.5 Non-tuberculous mycobacteria 17 1.3 The genus Burkholderia 18 1.3.1 Burkholderia cepacia complex 20 1.3.2 Bcc species as CF pathogens 22 1.4 Burkholderia cenocepacia 23 1.4.1 B. cenocepacia epidemiology 23 1.4.2 B. cenocepacia genome 25 1.4.3 B. cenocepacia pathogenicity and virulence factors 26 1.4.3.1 Quorum sensing 29 1.4.3.2 Biofilm 32 1.4.4 B. -
The Organization of the Quorum Sensing Luxi/R Family Genes in Burkholderia
Int. J. Mol. Sci. 2013, 14, 13727-13747; doi:10.3390/ijms140713727 OPEN ACCESS International Journal of Molecular Sciences ISSN 1422-0067 www.mdpi.com/journal/ijms Article The Organization of the Quorum Sensing luxI/R Family Genes in Burkholderia Kumari Sonal Choudhary 1, Sanjarbek Hudaiberdiev 1, Zsolt Gelencsér 2, Bruna Gonçalves Coutinho 1,3, Vittorio Venturi 1,* and Sándor Pongor 1,2,* 1 International Centre for Genetic Engineering and Biotechnology (ICGEB), Padriciano 99, Trieste 32149, Italy; E-Mails: [email protected] (K.S.C.); [email protected] (S.H.); [email protected] (B.G.C.) 2 Faculty of Information Technology, PázmányPéter Catholic University, Práter u. 50/a, Budapest 1083, Hungary; E-Mail: [email protected] 3 The Capes Foundation, Ministry of Education of Brazil, Cx postal 250, Brasilia, DF 70.040-020, Brazil * Authors to whom correspondence should be addressed; E-Mails: [email protected] (V.V.); [email protected] (S.P.); Tel.: +39-40-375-7300 (S.P.); Fax: +39-40-226-555 (S.P.). Received: 30 May 2013; in revised form: 20 June 2013 / Accepted: 24 June 2013 / Published: 2 July 2013 Abstract: Members of the Burkholderia genus of Proteobacteria are capable of living freely in the environment and can also colonize human, animal and plant hosts. Certain members are considered to be clinically important from both medical and veterinary perspectives and furthermore may be important modulators of the rhizosphere. Quorum sensing via N-acyl homoserine lactone signals (AHL QS) is present in almost all Burkholderia species and is thought to play important roles in lifestyle changes such as colonization and niche invasion. -
Identification of the Essential Genome of Burkholderia Cenocepacia K56-2 to Uncover Novel
Identification of the Essential Genome of Burkholderia cenocepacia K56-2 to Uncover Novel Antibacterial Targets by April S. Gislason A Thesis submitted to the Faculty of Graduate Studies of The University of Manitoba in partial fulfillment of the requirements for the degree of Doctor of Philosophy Department of Microbiology University of Manitoba Winnipeg, Manitoba, Canada Copyright © 2017 April S. Gislason ii Abstract Burkholderia cenocepacia K56-2 is a clinical isolate of the Burkholderia cepacia complex, a group of intrinsically antibiotic resistant opportunistic pathogens, for which few treatment options are available. The identification of essential genes is an important step for exploring new antibiotic targets. Previously, a conditional growth mutant library was created using transposon mutagenesis to insert a rhamnose-inducible promoter into the genome of B. cenocepacia. It was then demonstrated that conditional growth mutants under-expressing an antibiotic target were sensitized to sub-lethal concentrations of that antibiotic. This thesis describes the use of next generation sequencing to measure the enhanced sensitivity of conditional growth mutants after being grown together competitively. Evidence is provided to show that the sensitivity of a GyrB conditional growth mutant to its cognate antibiotic, novobiocin, was enhanced due to competitive growth. Screening eight antibiotics with known mechanisms of action against a pilot conditional growth mutant library revealed a previously uncharacterized two-component system involved antibiotic resistance in B. cenocepacia. With the goal of exploring new Burkholderia antibacterial targets, the essential genome of B. cenocepacia K56-2 was identified by sequencing a high density transposon mutant library. Comparison of the B. cenocepacia K56-2 essential gene set with the essential genomes predicted for B. -
Burkholderia Bacteria Produce Multiple Potentially Novel Molecules That Inhibit Carbapenem-Resistant Gram-Negative Bacterial Pathogens
antibiotics Article Burkholderia Bacteria Produce Multiple Potentially Novel Molecules that Inhibit Carbapenem-Resistant Gram-Negative Bacterial Pathogens Eliza Depoorter 1 , Evelien De Canck 1, Tom Coenye 2 and Peter Vandamme 1,* 1 Laboratory of Microbiology, Department of Biochemistry and Microbiology, Ghent University, 9000 Ghent, Belgium; [email protected] (E.D.); [email protected] (E.D.C.) 2 Laboratory of Pharmaceutical Microbiology, Department of Pharmaceutical Analysis, Ghent University, 9000 Ghent, Belgium; [email protected] * Correspondence: [email protected]; Tel.: +32-9264-5113 Abstract: Antimicrobial resistance in Gram-negative pathogens represents a global threat to human health. This study determines the antimicrobial potential of a taxonomically and geographically diverse collection of 263 Burkholderia (sensu lato) isolates and applies natural product dereplication strategies to identify potentially novel molecules. Antimicrobial activity is almost exclusively present in Burkholderia sensu stricto bacteria and rarely observed in the novel genera Paraburkholderia, Caballero- nia, Robbsia, Trinickia, and Mycetohabitans. Fourteen isolates show a unique spectrum of antimicrobial activity and inhibited carbapenem-resistant Gram-negative bacterial pathogens. Dereplication of the molecules present in crude spent agar extracts identifies 42 specialized metabolites, 19 of which repre- sented potentially novel molecules. The known identified Burkholderia metabolites include toxoflavin, reumycin, pyrrolnitrin, -
Phylogenetic Analysis of Burkholderia Species by Multilocus Sequence Analysis
Curr Microbiol DOI 10.1007/s00284-013-0330-9 Phylogenetic Analysis of Burkholderia Species by Multilocus Sequence Analysis Paulina Estrada-de los Santos • Pablo Vinuesa • Lourdes Martı´nez-Aguilar • Ann M. Hirsch • Jesu´s Caballero-Mellado Received: 11 August 2012 / Accepted: 21 January 2013 Ó Springer Science+Business Media New York 2013 Abstract Burkholderia comprises more than 60 species bacterial species. The group B comprises the B. cepacia of environmental, clinical, and agro-biotechnological rel- complex (opportunistic human pathogens), the B. pseudo- evance. Previous phylogenetic analyses of 16S rRNA, mallei subgroup, which includes both human and animal recA, gyrB, rpoB, and acdS gene sequences as well as pathogens, and an assemblage of plant pathogenic species. genome sequence comparisons of different Burkholderia The distinct lineages present in Burkholderia suggest that species have revealed two major species clusters. In this each group might represent a different genus. However, it study, we undertook a multilocus sequence analysis of 77 will be necessary to analyze the full set of Burkholderia type and reference strains of Burkholderia using atpD, species and explore whether enough phenotypic features gltB, lepA, and recA genes in combination with the 16S exist among the different clusters to propose that these rRNA gene sequence and employed maximum likelihood groups should be considered separate genera. and neighbor-joining criteria to test this further. The phy- logenetic analysis revealed, with high supporting values, Abbreviations distinct lineages within the genus Burkholderia. The two MLSA Multilocus sequence analysis large groups were named A and B, whereas the B. rhi- BCC Burkholderia cepacia complex zoxinica/B. -
Genomic Analyses of Burkholderia Cenocepacia Reveal Multiple Species with Differential Host-Adaptation to Plants and Humans Adrian Wallner1, Eoghan King1, Eddy L
Wallner et al. BMC Genomics (2019) 20:803 https://doi.org/10.1186/s12864-019-6186-z RESEARCH ARTICLE Open Access Genomic analyses of Burkholderia cenocepacia reveal multiple species with differential host-adaptation to plants and humans Adrian Wallner1, Eoghan King1, Eddy L. M. Ngonkeu2, Lionel Moulin1 and Gilles Béna1* Abstract Background: Burkholderia cenocepacia is a human opportunistic pathogen causing devastating symptoms in patients suffering from immunodeficiency and cystic fibrosis. Out of the 303 B. cenocepacia strains with available genomes, the large majority were isolated from a clinical context. However, several isolates originate from other environmental sources ranging from aerosols to plant endosphere. Plants can represent reservoirs for human infections as some pathogens can survive and sometimes proliferate in the rhizosphere. We therefore investigated if B. cenocepacia had the same potential. Results: We selected genome sequences from 31 different strains, representative of the diversity of ecological niches of B. cenocepacia, and conducted comparative genomic analyses in the aim of finding specific niche or host- related genetic determinants. Phylogenetic analyses and whole genome average nucleotide identity suggest that strains, registered as B. cenocepacia, belong to at least two different species. Core-genome analyses show that the clade enriched in environmental isolates lacks multiple key virulence factors, which are conserved in the sister clade where most clinical isolates fall, including the highly virulent ET12 lineage. Similarly, several plant associated genes display an opposite distribution between the two clades. Finally, we suggest that B. cenocepacia underwent a host jump from plants/environment to animals, as supported by the phylogenetic analysis. We eventually propose a name for the new species that lacks several genetic traits involved in human virulence. -
Phenotypic and Molecular Responses of Rice to Burkholderia S.L. Species Eoghan King
Phenotypic and molecular responses of rice to Burkholderia s.l. species Eoghan King To cite this version: Eoghan King. Phenotypic and molecular responses of rice to Burkholderia s.l. species. Vegetal Biology. Université Montpellier, 2019. English. NNT : 2019MONTG079. tel-02611007 HAL Id: tel-02611007 https://tel.archives-ouvertes.fr/tel-02611007 Submitted on 18 May 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. THÈSE POUR OBTENIR LE GRADE DE DOCTEUR DE L’UNIVERSITÉ DE M ONTPELLIER En Biologie des Systèmes École doctorale GAIA Unité de recherche UMR IPME Caractérisation phénotypique et moléculaire de la réponse du riz au c ours de l’ interaction avec des espèces de Burkholderia s.l. Présentée par Eoghan KING Le 11 décembre 2019 Sous la direction de Pierre CZERNIC et Lionel MOULIN RAPPORT DE GESTION Devant le jury composé de 2015 Matthieu ARLAT, Professeur des Universités, Université de Toulouse III – Paul Sabatier Rapporteur Alia DELLAGI, Professeure des Universités, AgroParisTech Rapportrice Sofie GOORMACHTIG, Professeure, VIB-UGent Examinatrice Michel LEBRUN, Professeur des Universités, Université de Montpellier Examinateur Pierre CZERNIC, Professeur des Universités, Université de Montpellier Directeur de thèse Lionel MOULIN, Directeur de Recherche, IRD Co-Directeur de thèse « Ceci est le véritable secret de la vie : Etre complètement engagé avec ce que vous faites dans l’ici et mainten ant. -
A Plant Endophytic Bacterium, Burkholderia Seminalis Strain 869T2, Promotes Plant Growth in Arabidopsis, Pak Choi, Chinese Amaranth, Lettuces, and Other Vegetables
microorganisms Article A Plant Endophytic Bacterium, Burkholderia seminalis Strain 869T2, Promotes Plant Growth in Arabidopsis, Pak Choi, Chinese Amaranth, Lettuces, and Other Vegetables Hau-Hsuan Hwang 1,2,* , Pei-Ru Chien 1, Fan-Chen Huang 1, Shih-Hsun Hung 1 , Chih-Horng Kuo 3 , Wen-Ling Deng 4 , En-Pei Isabel Chiang 2,5 and Chieh-Chen Huang 1,2,* 1 Department of Life Sciences, National Chung Hsing University, Taichung 402, Taiwan; [email protected] (P.-R.C.); [email protected] (F.-C.H.); [email protected] (S.-H.H.) 2 Innovation and Development Center of Sustainable Agriculture, National Chung Hsing University, Taichung 402, Taiwan; [email protected] 3 Institute of Plant and Microbial Biology, Academia Sinica, Taipei 115, Taiwan; [email protected] 4 Department of Plant Pathology, National Chung Hsing University, Taichung 402, Taiwan; [email protected] 5 Department of Food Science and Biotechnology, National Chung Hsing University, Taichung 402, Taiwan * Correspondence: [email protected] (H.-H.H.); [email protected] (C.-C.H.); Tel.: +886-4-2284-0416-412 (H.-H.H.); +886-4-2284-0416-402 (C.-C.H.); Fax: +886-4-2287-4740 (H.-H.H. & C.-C.H.) Abstract: Plant endophytic bacteria live inside host plants, can be isolated from surface-sterilized Citation: Hwang, H.-H.; Chien, P.-R.; plant tissues, and are non-pathogenic. These bacteria can assist host plants in obtaining more nutrients Huang, F.-C.; Hung, S.-H.; Kuo, C.-H.; and can improve plant growth via multiple mechanisms. Certain Gram-negative Burkholderia species, Deng, W.-L.; Chiang, E.-P.I.; Huang, including rhizobacteria, bioremediators, and biocontrol strains, have been recognized for their C.-C.