Hydrogen Isotope Exchanges Between Water and Methanol in Interstellar Ices a Faure, M Faure, P Theulé, E Quirico, B Schmitt
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Abundances of Isotopologues and Calibration of CO2 Greenhouse Gas Measurements Pieter P
Atmos. Meas. Tech. Discuss., doi:10.5194/amt-2017-34, 2017 Manuscript under review for journal Atmos. Meas. Tech. Discussion started: 14 February 2017 c Author(s) 2017. CC-BY 3.0 License. Abundances of isotopologues and calibration of CO2 greenhouse gas measurements Pieter P. Tans1,3, Andrew M. Crotwell2,3, and Kirk W. Thoning1,3 1Global Monitoring Division, Earth System Research Laboratory, National Oceanic and Atmospheric 5 Administration, Boulder, Colorado, 80305, USA. 2Cooperative Institute for Research in Environmental Sciences, University of Colorado, Boulder, Colorado, 80309, USA. 3Central Calibration Laboratory, World Meteorological Organization Global Atmosphere Watch program (WMO/GAW) 10 Correspondence to: Pieter Tans ([email protected]) Abstract We have developed a method to calculate the fractional distribution of CO2 across all of its component isotopologues based on measured δ13C and δ18O values. The fractional distribution can be used with known total CO2 to calculate each component isotopologue individually, in units of mole fraction. The technique is applicable to 15 any molecule where isotopologue-specific values are desired. We used it with a new CO2 calibration system to account for isotopic differences among the primary CO2 standards that define the WMO X2007 CO2 in air calibration scale and between the primary standards and standards in subsequent levels of the calibration hierarchy. The new calibration system uses multiple laser spectroscopic techniques to measure amount of substance fractions 16 12 16 16 13 16 18 12 16 (in mole fraction units) of the three major CO2 isotopologues ( O C O, O C O, and O C O) individually. 20 The three measured values are then combined into total CO2 (accounting for the rare unmeasured isotopologues), 13 18 δ C, and δ O values. -
Detection of Deuterated Methylcyanoacetylene, CH $ 2
Astronomy & Astrophysics manuscript no. AA202141371_Cabezas ©ESO 2021 June 8, 2021 Detection of deuterated methylcyanoacetylene, CH2DC3N, in TMC-1 ? C. Cabezas1, E. Roueff2, B. Tercero3; 4, M. Agúndez1, N. Marcelino1, P. de Vicente3 and J. Cernicharo1 1 Grupo de Astrofísica Molecular, Instituto de Física Fundamental (IFF-CSIC), C/ Serrano 121, 28006 Madrid, Spain. e-mail: [email protected]; [email protected] 2 LERMA, Observatoire de Paris, PSL Research University, CNRS, Sorbonne Universités, 92190 Meudon, France 3 Observatorio Astronómico Nacional (IGN), C/ Alfonso XII, 3, 28014, Madrid, Spain. 4 Centro de Desarrollos Tecnológicos, Observatorio de Yebes (IGN), 19141 Yebes, Guadalajara, Spain. Received; accepted ABSTRACT We report the first detection in space of the single deuterated isotopologue of methylcyanoacetylene, CH2DC3N. A total of fifteen rotational transitions, with J = 8-12 and Ka = 0 and 1, were identified for this species in TMC-1 in the 31.0-50.4 GHz range using the Yebes 40m radio telescope. The observed frequencies were used to derive for the first time the spectroscopic parameters of this 10 −2 deuterated isotopologue. We derive a column density of (8:0±0:4)×10 cm . The abundance ratio between CH3C3N and CH2DC3N 13 is ∼22. We also theoretically computed the principal spectroscopic constants of C isotopologues of CH3C3N and CH3C4H and those of the deuterated isotopologues of CH3C4H for which we could expect a similar degree of deuteration enhancement. However, we 13 have not detected either CH2DC4H nor CH3C4D nor any C isotopologue. The different observed deuterium ratios in TMC-1 are reasonably accounted for by a gas phase chemical model where the low temperature conditions favor deuteron transfer through + reactions with H2D . -
Isotopic Fractionation of Carbon, Deuterium, and Nitrogen: a Full Chemical Study?
A&A 576, A99 (2015) Astronomy DOI: 10.1051/0004-6361/201425113 & c ESO 2015 Astrophysics Isotopic fractionation of carbon, deuterium, and nitrogen: a full chemical study? E. Roueff1;2, J. C. Loison3, and K. M. Hickson3 1 LERMA, Observatoire de Paris, PSL Research University, CNRS, UMR8112, Place Janssen, 92190 Meudon Cedex, France e-mail: [email protected] 2 Sorbonne Universités, UPMC Univ. Paris 6, 4 Place Jussieu, 75005 Paris, France 3 ISM, Université de Bordeaux – CNRS, UMR 5255, 351 cours de la Libération, 33405 Talence Cedex, France e-mail: [email protected] Received 6 October 2014 / Accepted 5 January 2015 ABSTRACT Context. The increased sensitivity and high spectral resolution of millimeter telescopes allow the detection of an increasing number of isotopically substituted molecules in the interstellar medium. The 14N/15N ratio is difficult to measure directly for molecules con- taining carbon. Aims. Using a time-dependent gas-phase chemical model, we check the underlying hypothesis that the 13C/12C ratio of nitriles and isonitriles is equal to the elemental value. Methods. We built a chemical network that contains D, 13C, and 15N molecular species after a careful check of the possible fraction- ation reactions at work in the gas phase. Results. Model results obtained for two different physical conditions that correspond to a moderately dense cloud in an early evolu- tionary stage and a dense, depleted prestellar core tend to show that ammonia and its singly deuterated form are somewhat enriched 15 14 15 + in N, which agrees with observations. The N/ N ratio in N2H is found to be close to the elemental value, in contrast to previous 15 + models that obtain a significant enrichment, because we found that the fractionation reaction between N and N2H has a barrier in + 15 + + 15 + the entrance channel. -
Packed Column Supercritical Fluid Chromatography: Applications in Environmental Chemistry
Packed Column Supercritical Fluid Chromatography: Applications in Environmental Chemistry Dedication To Steve Örebro Studies in Chemistry 19 NICOLE RIDDELL Packed Column Supercritical Fluid Chromatography: Applications in Environmental Chemistry © Nicole Riddell, 2017 Title: Packed Column Supercritical Fluid Chromatography: Applications in Environmental Chemistry Publisher: Örebro University 2017 www.publications.oru.se Print: Örebro University, Repro 04/2017 ISSN 1651-4270 ISBN 978-91-7529-184-0 Abstract Nicole Riddell (2017): Packed Column Supercritical Fluid Chromatography: Applications in Environmental Chemistry. Örebro Studies in Chemistry 19. Although gas and liquid chromatography have emerged as dominant separation techniques in environmental analytical chemistry, these methods do not allow for the concurrent analysis of chemically diverse groups of persistent organic pollutants (POPs). There are also a small number of compounds which are not easily amenable to either of these traditional separation techniques. The main objective of this thesis was to address these issues by demonstrating the applicability of packed col- umn supercritical fluid chromatography (pSFC) coupled to mass spec- trometry (MS) in various aspects of environmental chemistry. First, pSFC/MS analytical methods were developed for legacy POPs (PCDDs, PCDFs, and PCBs) as well as the emerging environmental con- taminant Dechlorane Plus (DP), and issues relating to the ionization of target analytes when pSFC was coupled to MS were explored. Novel APPI and APCI reagents (fluorobenzene and triethylamine) were opti- mized and real samples (water and soil) were analyzed to demonstrate environmental applicability. The possibility of chiral and preparative scale pSFC separations was then demonstrated through the isolation and characterization of ther- mally labile hexabromocyclododecane (HBCDD) stereoisomers. The analytical pSFC separation of the α-, β-, and γ-HBCDD enantiomers as well as the δ and ε meso forms was shown to be superior to results ob- tained using a published LC method. -
Deuteriodesilylation: a Mild and Selective Method for the Site- Specific Incorporation of Deuterium Into Drug Candidates and Pharmaceutical Structures
DEUTERIODESILYLATION: A MILD AND SELECTIVE METHOD FOR THE SITE- SPECIFIC INCORPORATION OF DEUTERIUM INTO DRUG CANDIDATES AND PHARMACEUTICAL STRUCTURES Kimberly N. Voronin A Thesis Submitted to the University of North Carolina Wilmington in Partial Fulfillment of the Requirements for the Degree of Master of Science Department of Chemistry and Biochemistry University of North Carolina Wilmington 2012 Approved by Advisory Committee Chris V. Galliford Pamela J. Seaton John A. Tyrell Chair Accepted by Dean, Graduate School TABLE OF CONTENTS ABSTRACT ................................................................................................................................... vi ACKNOWLEDGEMENTS .......................................................................................................... vii DEDICATION ............................................................................................................................... ix LIST OF TABLES .......................................................................................................................... x LIST OF FIGURES ...................................................................................................................... xi LIST OF ABBREVIATIONS ...................................................................................................... xiii LIST OF SCHEMES .....................................................................................................................xv CHAPTER 1: INTRODUCTION ....................................................................................................1 -
Mass Spectrometric Separation and Quantitation of Overlapping Isotopologues
Mass Spectrometric Separation and Quantitation of Overlapping Isotopologues. H2O/HOD/D2O and H2Se/HDSe/D2Se Mixtures Juris Meija and Zoltan Mester Institute for National Measurement Standards, National Research Council Canada, Ottawa, Ontario, Canada Alessandro D’Ulivo Laboratory of Instrumental Analytical Chemistry, Institute for Chemical and Physical Processes, Research area of Pisa, National Research Council of Italy, Pisa, Italy Three conceptually different mathematical methods are presented for accurate mass spectro- metric determination of H2O/HOD/D2O and H2Se/HDSe/D2Se concentrations from mix- tures. These are alternating least-squares, weighted two-band target entropy minimization, and a statistical mass balance model. The otherwise nonmeasurable mass spectra of partially deuterated isotopologues (HOD and HDSe) are mathematically constructed. Any recorded isotopologue mixture mass spectra are then deconvoluted by least-squares into their compo- nents. This approach is used to study the H2O/D2O exchange reaction, and is externally validated gravimetrically. The H2O/D2O exchange equilibrium constant is also measured from the deconvoluted 70 eV electron impact GC/MS data (K ϭ 3.85 Ϯ 0.03). (J Am Soc Mass Spectrom 2006, 17, 1028–1036) © 2006 American Society for Mass Spectrometry ` ϩ sotopologues are compounds that differ in isotopic rapid isotope-exchange equilibrium 2HOD H2O composition only, such as H2O and D2O. These com- D2O. Ipounds play an important role in analytical chemistry, Using the best available commercial high-resolution especially in quantitative analysis where most of the mass spectrometers, one can possibly address the H2O/ ⌬ Ͼ modern internal quantitation methods are based on isoto- HOD/D2O system (requiring m/ m 12,000 to fully ϩ ·ϩ pologues. -
A Novel High-Mass Resolution Gas-Source Mass Spectrometer Facility at Ucla
47th Lunar and Planetary Science Conference (2016) 2238.pdf A NOVEL HIGH-MASS RESOLUTION GAS-SOURCE MASS SPECTROMETER FACILITY AT UCLA. Edward D. Young1, Issaku E. Kohl1, Kaitlyn McCain1, Junko Isa1, and Douglas Rumble III2, 1Department of Earth, Planetary, and Space Sciences, University of California Los Angeles, Los Angeles, CA, USA ([email protected]), 2Geophysical Laboratory, 5251 Broad Branch Rd. NW, Washington DC 20015-1305, USA. Introduction: Gas-source isotope ratio mass spec- Oxygen Isotopes: Analyses of extraterrestrial trometry is one of the primary methods for obtaining samples for precise and accurate 18O/16O and 17O/16O, the highest precision isotope ratio measurements of yielding diagnostic Δ′17O values, has been hampered geological and atmospheric samples. It is the standard historically by the presence of NF+ interfering with 33 + for triple oxygen isotope ratio analysis of meteorites, O2 at mass/charge 33 in the mass spectrum. The for example. However, until very recently, advances Panorama instrument can be used to eliminate this in- in this important technology have been limited. terference by virtue of its high mass resolution (Figure Here we describe a unique and novel isotope ratio 2). In a companion abstract, we demonstrate the ad- mass spectrometer (IRMS), the Nu Instruments Pano- vantages of ground-truthing extraterrestrial oxygen rama, developed explicitly for high-mass-resolution isotope ratio measurements of rocks with this method. analysis of isotopologue ratios of gas samples. We have shown recently that this instrument improves the reliability of oxygen isotope analyses at the highest precision and accuracy. In addition, it offers the pro- spects for developing the foundations for using multi- ply-substituted gas species (CH4, N2, O2) as tracers of atmospheric processes and geochemical cycles that should prove useful for extraterrestrial environments as flight instrumentation (e.g., TILDAS) improves. -
Interferometric Observations of Warm Deuterated Methanol in the Inner Regions of Low- Mass Protostars
Interferometric observations of warm deuterated methanol in the inner regions of low- mass protostars Taquet, V; Bianchi, E.; Codella, C.; Persson, M., V; Ceccarelli, C.; Cabrit, S.; Jorgensen, J. K.; Kahane, C.; Lopez-Sepulcre, A.; Neri, R. Published in: Astronomy & Astrophysics DOI: 10.1051/0004-6361/201936044 Publication date: 2019 Document version Publisher's PDF, also known as Version of record Document license: CC BY-NC Citation for published version (APA): Taquet, V., Bianchi, E., Codella, C., Persson, M. V., Ceccarelli, C., Cabrit, S., Jorgensen, J. K., Kahane, C., Lopez-Sepulcre, A., & Neri, R. (2019). Interferometric observations of warm deuterated methanol in the inner regions of low-mass protostars. Astronomy & Astrophysics, 632, [A19]. https://doi.org/10.1051/0004- 6361/201936044 Download date: 02. Oct. 2021 A&A 632, A19 (2019) https://doi.org/10.1051/0004-6361/201936044 Astronomy & © ESO 2019 Astrophysics Interferometric observations of warm deuterated methanol in the inner regions of low-mass protostars? V. Taquet1, E. Bianchi2,1, C. Codella1,2, M. V. Persson3, C. Ceccarelli2, S. Cabrit4, J. K. Jørgensen5, C. Kahane2, A. López-Sepulcre2,6, and R. Neri6 1 INAF, Osservatorio Astrofisico di Arcetri, Largo E. Fermi 5, 50125 Firenze, Italy e-mail: [email protected] 2 IPAG, Université Grenoble Alpes, CNRS, 38000 Grenoble, France 3 Department of Space, Earth, and Environment, Chalmers University of Technology, Onsala Space Observatory, 439 92 Onsala, Sweden 4 LERMA, Observatoire de Paris, PSL Research University, CNRS, Sorbonne Université, UPMC Université Paris 06, 75014 Paris, France 5 Niels Bohr Institute, University of Copenhagen, Øster Voldgade 5–7, 1350 Copenhagen K., Denmark 6 Institut de Radioastronomie Millimétrique, 38406 Saint-Martin d’Hères, France Received 7 June 2019 / Accepted 19 September 2019 ABSTRACT Methanol is a key species in astrochemistry because it is the most abundant organic molecule in the interstellar medium and is thought to be the mother molecule of many complex organic species. -
Automatic Isotopologue Normalization for Metabolic Tracer Analysis Sophie Trefely1,2* , Peter Ashwell1 and Nathaniel W
Trefely et al. BMC Bioinformatics (2016) 17:485 DOI 10.1186/s12859-016-1360-7 SOFTWARE Open Access FluxFix: automatic isotopologue normalization for metabolic tracer analysis Sophie Trefely1,2* , Peter Ashwell1 and Nathaniel W. Snyder1 Abstract Background: Isotopic tracer analysis by mass spectrometry is a core technique for the study of metabolism. Isotopically labeled atoms from substrates, such as [13C]-labeled glucose, can be traced by their incorporation over time into specific metabolic products. Mass spectrometry is often used for the detection and differentiation of the isotopologues of each metabolite of interest. For meaningful interpretation, mass spectrometry data from metabolic tracer experiments must be corrected to account for the naturally occurring isotopologue distribution. The calculations required for this correction are time consuming and error prone and existing programs are often platform specific, non-intuitive, commercially licensed and/or limited in accuracy by using theoretical isotopologue distributions, which are prone to artifacts from noise or unresolved interfering signals. Results: Here we present FluxFix (http://fluxfix.science), an application freely available on the internet that quickly and reliably transforms signal intensity values into percent mole enrichment for each isotopologue measured. ‘Unlabeled’ data, representing the measured natural isotopologue distribution for a chosen analyte, is entered by the user. This data is used to generate a correction matrix according to a well-established algorithm. The correction matrix is applied to labeled data, also entered by the user, thus generating the corrected output data. FluxFix is compatible with direct copy and paste from spreadsheet applications including Excel (Microsoft) and Google sheets and automatically adjusts to account for input data dimensions. -
Methanol—Inhibitor Or Promoter of the Formation of Gas Hydrates from Deuterated Ice?
BOBEV AND TAIT: METHANOL—INHIBITOR OR PROMOTER? 1209 American Mineralogist, Volume 89, pages 1208–1214, 2004 Methanol—inhibitor or promoter of the formation of gas hydrates from deuterated ice? SVILEN BOBEV* AND KIMBERLY T. TAIT Manuel Lujan Jr. Neutron Scattering Center, LANSCE 12 MS H805, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, U.S.A. ABSTRACT Kinetic studies are reported of the effect of methanol on the rate of formation of CO2- and CH4-hy- drates by means of in situ time-of-flight neutron powder diffraction. The experiments were carried out at temperatures ranging from 200 to 250 K and pressures up to 7 MPa. The samples were prepared from mixtures of ground, deuterated ice and deuterated methanol (up to 20 vol%), which were transformed in situ into CO2- or CH4-hydrates by pressurizing the systems with the corresponding gas. The observed rates of formation of hydrates are orders of magnitude higher than the rate of formation from pure deuterated ice under the same pressure and temperature conditions. Glycols and alcohols, methanol in particular, are long known as thermodynamic inhibitors of hydrate formation. Our study indicates that methanol can also act as a kinetic promoter for the formation of gas hydrates. Preliminary data suggest that the kinetics also depend strongly on concentration and the isotopic composition. INTRODUCTION particular, time-dependent neutron diffraction at a variety of tem- The crystal structures, thermodynamic models, and engineer- peratures and pressures has been effectively used to research the ing applications of CO2- and CH4-hydrates have been extensively kinetics of gas hydrate formation and dissociation (Henning et al. -
Computational and Statistical Methods for Mass Spectrometry Data Analysis
University of Warsaw Faculty of Mathematics, Informatics and Mechanics Mateusz Krzysztof Łąi Student no. Computational and Statistical Methods for Mass Spectrometry Data Analysis PhD’s dissertation in COMPUTER SCIENCE Supervisors: Prof. Anna Gambin Institute of Informatics, University of Warsaw Dr Błażej Miasojedow Institute of Applied Mathematics, University of Warsaw September Supervisor’s statement Hereby I confirm that the presented thesis was prepared under my supervi- sion and that it fulfils the requirements for the degree of PhD of Computer Science. Date Supervisor’s signature Author’s statement Hereby I declare that the presented thesis was prepared by me and none of its contents was obtained by means that are against the law. The thesis has never before been a subject of any procedure of obtaining an academic degree. Moreover, I declare that the present version of the thesis is identical to the attached electronic version. Date Author’s signature Abstract Computational and Statistical Methods for Mass Spectrometry Data Analysis This dissertation covers a series of related topics in the mathematical modelling of mass spectrometry data. The dissertation opens by a presentation of an optimal al- gorithm for the generation of the fine isotopic structure. We further show the ap- plications of that algorithm to the problem of deconvoluting mixed isotopic signals, in two different ways. We also approach the problem of estimating the deep pa- rameters of mass detectors, estimating the parameters of a function that relates the instrument-generated intensities to the numbers of ions. These solutions are applied to the problem of understanding Electron Driven reactions, whose principal aim is to induce ion fragmentation and, in that way, enhance the instrument’s identifica- tion capabilities. -
Position-Specific Hydrogen Isotope Equilibrium in Propane
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Caltech Authors Accepted Manuscript Position-Specific Hydrogen Isotope Equilibrium in Propane Hao Xie, Camilo Ponton, Michael J Formolo, Michael Lawson, Brian K Peterson, Max K. Lloyd, Alex L Sessions, John M Eiler PII: S0016-7037(18)30340-5 DOI: https://doi.org/10.1016/j.gca.2018.06.025 Reference: GCA 10814 To appear in: Geochimica et Cosmochimica Acta Received Date: 25 January 2018 Revised Date: 18 June 2018 Accepted Date: 22 June 2018 Please cite this article as: Xie, H., Ponton, C., Formolo, M.J., Lawson, M., Peterson, B.K., Lloyd, M.K., Sessions, A.L., Eiler, J.M., Position-Specific Hydrogen Isotope Equilibrium in Propane, Geochimica et Cosmochimica Acta (2018), doi: https://doi.org/10.1016/j.gca.2018.06.025 This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final form. Please note that during the production process errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain. Position-Specific Hydrogen Isotope Equilibrium in Propane Hao Xie1*, Camilo Ponton1, Michael J Formolo2, Michael Lawson3, Brian K Peterson4, Max K. Lloyd1, Alex L Sessions1, John M Eiler1 1. Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA, 91125, USA 2.