Conservation Assessment for Dermatocarpon Meiophyllizum Vainio
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Mycosporine-Like Amino Acids (Maas) in Time-Series of Lichen Specimens from Natural History Collections
molecules Article Mycosporine-Like Amino Acids (MAAs) in Time-Series of Lichen Specimens from Natural History Collections Marylène Chollet-Krugler 1, Thi Thu Tram Nguyen 1,2 , Aurelie Sauvager 1, Holger Thüs 3,4,* and Joël Boustie 1,* 1 CNRS, ISCR (Institut des Sciences Chimiques de Rennes)-UMR 6226, Univ Rennes, F-35000 Rennes, France; [email protected] (M.C.-K.); [email protected] (T.T.T.N.); [email protected] (A.S.) 2 Department of Chemistry, Faculty of Science, Can Tho University of Medicine and Pharmacy, 179 Nguyen Van Cu Street, An Khanh, Ninh Kieu, Can Tho, 902495 Vietnam 3 State Museum of Natural History Stuttgart, Rosenstein 1, 70191 Stuttgart, Germany 4 The Natural History Museum London, Cromwell Rd, Kensington, London SW7 5BD, UK * Correspondence: [email protected] (H.T.); [email protected] (J.B.) Academic Editors: Sophie Tomasi and Joël Boustie Received: 12 February 2019; Accepted: 16 March 2019; Published: 19 March 2019 Abstract: Mycosporine-like amino acids (MAAs) were quantified in fresh and preserved material of the chlorolichen Dermatocarpon luridum var. luridum (Verrucariaceae/Ascomycota). The analyzed samples represented a time-series of over 150 years. An HPLC coupled with a diode array detector (HPLC-DAD) in hydrophilic interaction liquid chromatography (HILIC) mode method was developed and validated for the quantitative determination of MAAs. We found evidence for substance specific differences in the quality of preservation of two MAAs (mycosporine glutamicol, mycosporine glutaminol) in Natural History Collections. We found no change in average mycosporine glutamicol concentrations over time. Mycosporine glutaminol concentrations instead decreased rapidly with no trace of this substance detectable in collections older than nine years. -
Thi Thu Tram NGUYEN
ANNÉE 2014 THÈSE / UNIVERSITÉ DE RENNES 1 sous le sceau de l’Université Européenne de Bretagne pour le grade de DOCTEUR DE L’UNIVERSITÉ DE RENNES 1 Mention : Chimie Ecole doctorale Sciences De La Matière Thi Thu Tram NGUYEN Préparée dans l’unité de recherche UMR CNRS 6226 Equipe PNSCM (Produits Naturels Synthèses Chimie Médicinale) (Faculté de Pharmacie, Université de Rennes 1) Screening of Thèse soutenue à Rennes le 19 décembre 2014 mycosporine-like devant le jury composé de : compounds in the Marie-Dominique GALIBERT Professeur à l’Université de Rennes 1 / Examinateur Dermatocarpon genus. Holger THÜS Conservateur au Natural History Museum Londres / Phytochemical study Rapporteur Erwan AR GALL of the lichen Maître de conférences à l’Université de Bretagne Occidentale / Rapporteur Dermatocarpon luridum Kim Phi Phung NGUYEN Professeur à l’Université des sciences naturelles (With.) J.R. Laundon. d’Hô-Chi-Minh-Ville Vietnam / Examinateur Marylène CHOLLET-KRUGLER Maître de conférences à l’Université de Rennes1 / Co-directeur de thèse Joël BOUSTIE Professeur à l’Université de Rennes 1 / Directeur de thèse Remerciements En premier lieu, je tiens à remercier Monsieur le Dr Holger Thüs et Monsieur le Dr Erwan Ar Gall d’avoir accepté d’être les rapporteurs de mon manuscrit, ainsi que Madame la Professeure Marie-Dominique Galibert d’avoir accepté de participer à ce jury de thèse. J’exprime toute ma gratitude au Dr Marylène Chollet-Krugler pour avoir guidé mes pas dès les premiers jours et tout au long de ces trois années. Je la remercie particulièrement pour sa disponibilité et sa grande gentillesse, son écoute et sa patience. -
BLS Bulletin 111 Winter 2012.Pdf
1 BRITISH LICHEN SOCIETY OFFICERS AND CONTACTS 2012 PRESIDENT B.P. Hilton, Beauregard, 5 Alscott Gardens, Alverdiscott, Barnstaple, Devon EX31 3QJ; e-mail [email protected] VICE-PRESIDENT J. Simkin, 41 North Road, Ponteland, Newcastle upon Tyne NE20 9UN, email [email protected] SECRETARY C. Ellis, Royal Botanic Garden, 20A Inverleith Row, Edinburgh EH3 5LR; email [email protected] TREASURER J.F. Skinner, 28 Parkanaur Avenue, Southend-on-Sea, Essex SS1 3HY, email [email protected] ASSISTANT TREASURER AND MEMBERSHIP SECRETARY H. Döring, Mycology Section, Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AB, email [email protected] REGIONAL TREASURER (Americas) J.W. Hinds, 254 Forest Avenue, Orono, Maine 04473-3202, USA; email [email protected]. CHAIR OF THE DATA COMMITTEE D.J. Hill, Yew Tree Cottage, Yew Tree Lane, Compton Martin, Bristol BS40 6JS, email [email protected] MAPPING RECORDER AND ARCHIVIST M.R.D. Seaward, Department of Archaeological, Geographical & Environmental Sciences, University of Bradford, West Yorkshire BD7 1DP, email [email protected] DATA MANAGER J. Simkin, 41 North Road, Ponteland, Newcastle upon Tyne NE20 9UN, email [email protected] SENIOR EDITOR (LICHENOLOGIST) P.D. Crittenden, School of Life Science, The University, Nottingham NG7 2RD, email [email protected] BULLETIN EDITOR P.F. Cannon, CABI and Royal Botanic Gardens Kew; postal address Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AB, email [email protected] CHAIR OF CONSERVATION COMMITTEE & CONSERVATION OFFICER B.W. Edwards, DERC, Library Headquarters, Colliton Park, Dorchester, Dorset DT1 1XJ, email [email protected] CHAIR OF THE EDUCATION AND PROMOTION COMMITTEE: S. -
Key to Dermatocarpon of the Pacific Northwest
Key to Dermatocarpon of the Pacific Northwest Doug A. Glavich, email: [email protected] Draft 1: September 2006 The objective of this key is to incorporate D. meiophyllizum, which has been overlooked in North America (Glavich & Geiser 2004), into the Pacific Northwest lichen flora. This key is based on a combination of the following works: Goward et al. (1994), Heiðmarsson (2001), McCune & Geiser (1997), and McCune & Goward (1995). Members of the genus Dermatocarpon are foliose chlorolichens that, although some species are found in dry habitats, are defined by their habitat of aquatic or semi-aquatic environments (stream channel rocks, seeps, lake margins, etc). Thalli range from small squamulose (< 3 mm) to larger 50 mm wide foliose lobes; upper surface is usually smooth and range from grayish to brown (some green when wet); the grey upper surface is due to inflated epinecreal hyphae and dense pruina on some thalli is usually due to a thick layer of inflated epinecreal hyphae (Heiðmarsson 1996); lower surface smooth, granular, veined, or rhizinate. Many species are umbilicate and single-lobed with a single holdfast, while some are multi-lobed and attached to the substrate by multiple holdfasts. Ascocarps are immersed perithecia. Substrate mostly rock though some found on soil. The use of the term ‘pruinose’ in this key refers mainly to the appearance of the upper surface caused by the epinecreal hyphae and not the traditional definition of a an upper surface with calcium oxalate. 1a. Lower surface rhizinate……………………………...…………………..D. moulinsii 1b. Lower surface not rhizinate……………………………………………….………….2 2a. Medulla I (Melzer’s Reagent) + Red…………………………………….D. -
Biodiversity Profile of Afghanistan
NEPA Biodiversity Profile of Afghanistan An Output of the National Capacity Needs Self-Assessment for Global Environment Management (NCSA) for Afghanistan June 2008 United Nations Environment Programme Post-Conflict and Disaster Management Branch First published in Kabul in 2008 by the United Nations Environment Programme. Copyright © 2008, United Nations Environment Programme. This publication may be reproduced in whole or in part and in any form for educational or non-profit purposes without special permission from the copyright holder, provided acknowledgement of the source is made. UNEP would appreciate receiving a copy of any publication that uses this publication as a source. No use of this publication may be made for resale or for any other commercial purpose whatsoever without prior permission in writing from the United Nations Environment Programme. United Nations Environment Programme Darulaman Kabul, Afghanistan Tel: +93 (0)799 382 571 E-mail: [email protected] Web: http://www.unep.org DISCLAIMER The contents of this volume do not necessarily reflect the views of UNEP, or contributory organizations. The designations employed and the presentations do not imply the expressions of any opinion whatsoever on the part of UNEP or contributory organizations concerning the legal status of any country, territory, city or area or its authority, or concerning the delimitation of its frontiers or boundaries. Unless otherwise credited, all the photos in this publication have been taken by the UNEP staff. Design and Layout: Rachel Dolores -
Photobiont Relationships and Phylogenetic History of Dermatocarpon Luridum Var
Plants 2012, 1, 39-60; doi:10.3390/plants1020039 OPEN ACCESS plants ISSN 2223-7747 www.mdpi.com/journal/plants Article Photobiont Relationships and Phylogenetic History of Dermatocarpon luridum var. luridum and Related Dermatocarpon Species Kyle M. Fontaine 1, Andreas Beck 2, Elfie Stocker-Wörgötter 3 and Michele D. Piercey-Normore 1,* 1 Department of Biological Sciences, University of Manitoba, Winnipeg, Manitoba, R3T 2N2, Canada; E-Mail: [email protected] 2 Botanische Staatssammlung München, Menzinger Strasse 67, D-80638 München, Germany; E-Mail: [email protected] 3 Department of Organismic Biology, Ecology and Diversity of Plants, University of Salzburg, Hellbrunner Strasse 34, A-5020 Salzburg, Austria; E-Mail: [email protected] * Author to whom correspondence should be addressed; E-Mail: Michele.Piercey-Normore@ad. umanitoba.ca; Tel.: +1-204-474-9610; Fax: +1-204-474-7588. Received: 31 July 2012; in revised form: 11 September 2012 / Accepted: 25 September 2012 / Published: 10 October 2012 Abstract: Members of the genus Dermatocarpon are widespread throughout the Northern Hemisphere along the edge of lakes, rivers and streams, and are subject to abiotic conditions reflecting both aquatic and terrestrial environments. Little is known about the evolutionary relationships within the genus and between continents. Investigation of the photobiont(s) associated with sub-aquatic and terrestrial Dermatocarpon species may reveal habitat requirements of the photobiont and the ability for fungal species to share the same photobiont species under different habitat conditions. The focus of our study was to determine the relationship between Canadian and Austrian Dermatocarpon luridum var. luridum along with three additional sub-aquatic Dermatocarpon species, and to determine the species of photobionts that associate with D. -
Generic Classification of the Verrucariaceae TAXON 58 (1) • February 2009: 184–208
Gueidan & al. • Generic classification of the Verrucariaceae TAXON 58 (1) • February 2009: 184–208 TAXONOMY Generic classification of the Verrucariaceae (Ascomycota) based on molecular and morphological evidence: recent progress and remaining challenges Cécile Gueidan1,16, Sanja Savić2, Holger Thüs3, Claude Roux4, Christine Keller5, Leif Tibell2, Maria Prieto6, Starri Heiðmarsson7, Othmar Breuss8, Alan Orange9, Lars Fröberg10, Anja Amtoft Wynns11, Pere Navarro-Rosinés12, Beata Krzewicka13, Juha Pykälä14, Martin Grube15 & François Lutzoni16 1 Centraalbureau voor Schimmelcultures, P.O. Box 85167, 3508 AD Utrecht, the Netherlands. c.gueidan@ cbs.knaw.nl (author for correspondence) 2 Uppsala University, Evolutionary Biology Centre, Department of Systematic Botany, Norbyvägen 18D, 752 36 Uppsala, Sweden 3 Botany Department, Natural History Museum, Cromwell Road, London, SW7 5BD, U.K. 4 Chemin des Vignes vieilles, 84120 Mirabeau, France 5 Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Zürcherstrasse 111, 8903 Birmensdorf, Switzerland 6 Universidad Rey Juan Carlos, ESCET, Área de Biodiversidad y Conservación, c/ Tulipán s/n, 28933 Móstoles, Madrid, Spain 7 Icelandic Institute of Natural History, Akureyri division, P.O. Box 180, 602 Akureyri, Iceland 8 Naturhistorisches Museum Wien, Botanische Abteilung, Burgring 7, 1010 Wien, Austria 9 Department of Biodiversity and Systematic Biology, National Museum of Wales, Cathays Park, Cardiff CF10 3NP, U.K. 10 Botanical Museum, Östra Vallgatan 18, 223 61 Lund, Sweden 11 Institute for Ecology, Department of Zoology, Copenhagen University, Thorvaldsensvej 40, 1871 Frederiksberg C, Denmark 12 Departament de Biologia Vegetal (Botànica), Facultat de Biologia, Universitat de Barcelona, Diagonal 645, 08028 Barcelona, Spain 13 Laboratory of Lichenology, Institute of Botany, Polish Academy of Sciences, Lubicz 46, 31-512 Kraków, Poland 14 Finnish Environment Institute, Research Programme for Biodiversity, P.O. -
A Rock-Inhabiting Ancestor for Mutualistic and Pathogen-Rich Fungal Lineages
UvA-DARE (Digital Academic Repository) A rock-inhabiting ancestor for mutualistic and pathogen-rich fungal lineages Gueidan, C.; Ruibal Villaseñor, C.; de Hoog, G.S.; Gorbushina, A.A.; Untereiner, W.A.; Lutzoni, F. DOI 10.3114/sim.2008.61.11 Publication date 2008 Document Version Final published version Published in Studies in Mycology Link to publication Citation for published version (APA): Gueidan, C., Ruibal Villaseñor, C., de Hoog, G. S., Gorbushina, A. A., Untereiner, W. A., & Lutzoni, F. (2008). A rock-inhabiting ancestor for mutualistic and pathogen-rich fungal lineages. Studies in Mycology, 61(1), 111-119. https://doi.org/10.3114/sim.2008.61.11 General rights It is not permitted to download or to forward/distribute the text or part of it without the consent of the author(s) and/or copyright holder(s), other than for strictly personal, individual use, unless the work is under an open content license (like Creative Commons). Disclaimer/Complaints regulations If you believe that digital publication of certain material infringes any of your rights or (privacy) interests, please let the Library know, stating your reasons. In case of a legitimate complaint, the Library will make the material inaccessible and/or remove it from the website. Please Ask the Library: https://uba.uva.nl/en/contact, or a letter to: Library of the University of Amsterdam, Secretariat, Singel 425, 1012 WP Amsterdam, The Netherlands. You will be contacted as soon as possible. UvA-DARE is a service provided by the library of the University of Amsterdam (https://dare.uva.nl) Download date:30 Sep 2021 available online at www.studiesinmycology.org STUDIE S IN MYCOLOGY 61: 111–119. -
Piedmont Lichen Inventory
PIEDMONT LICHEN INVENTORY: BUILDING A LICHEN BIODIVERSITY BASELINE FOR THE PIEDMONT ECOREGION OF NORTH CAROLINA, USA By Gary B. Perlmutter B.S. Zoology, Humboldt State University, Arcata, CA 1991 A Thesis Submitted to the Staff of The North Carolina Botanical Garden University of North Carolina at Chapel Hill Advisor: Dr. Johnny Randall As Partial Fulfilment of the Requirements For the Certificate in Native Plant Studies 15 May 2009 Perlmutter – Piedmont Lichen Inventory Page 2 This Final Project, whose results are reported herein with sections also published in the scientific literature, is dedicated to Daniel G. Perlmutter, who urged that I return to academia. And to Theresa, Nichole and Dakota, for putting up with my passion in lichenology, which brought them from southern California to the Traingle of North Carolina. TABLE OF CONTENTS Introduction……………………………………………………………………………………….4 Chapter I: The North Carolina Lichen Checklist…………………………………………………7 Chapter II: Herbarium Surveys and Initiation of a New Lichen Collection in the University of North Carolina Herbarium (NCU)………………………………………………………..9 Chapter III: Preparatory Field Surveys I: Battle Park and Rock Cliff Farm……………………13 Chapter IV: Preparatory Field Surveys II: State Park Forays…………………………………..17 Chapter V: Lichen Biota of Mason Farm Biological Reserve………………………………….19 Chapter VI: Additional Piedmont Lichen Surveys: Uwharrie Mountains…………………...…22 Chapter VII: A Revised Lichen Inventory of North Carolina Piedmont …..…………………...23 Acknowledgements……………………………………………………………………………..72 Appendices………………………………………………………………………………….…..73 Perlmutter – Piedmont Lichen Inventory Page 4 INTRODUCTION Lichens are composite organisms, consisting of a fungus (the mycobiont) and a photosynthesising alga and/or cyanobacterium (the photobiont), which together make a life form that is distinct from either partner in isolation (Brodo et al. -
Heidmarssonetal2017.Pdf
Phytotaxa 306 (1): 037–048 ISSN 1179-3155 (print edition) http://www.mapress.com/j/pt/ PHYTOTAXA Copyright © 2017 Magnolia Press Article ISSN 1179-3163 (online edition) https://doi.org/10.11646/phytotaxa.306.1.3 Multi-locus phylogeny supports the placement of Endocarpon pulvinatum within Staurothele s. str. (lichenised ascomycetes, Eurotiomycetes, Verrucariaceae) STARRI HEIÐMARSSON1, CÉCILE GUEIDAN2,3, JOLANTA MIADLIKOWSKA4 & FRANÇOIS LUTZONI4 1 Icelandic Institute of Natural History, Akureyri division, Borgir Nordurslod, 600 Akureyri, Iceland ([email protected]) 2 Australian National Herbarium, National Research Collections Australia, CSIRO-NCMI, PO Box 1700, Canberra, ACT 2601, Aus- tralia ([email protected]) 3 Department of Life Sciences, Natural History Museum, Cromwell road, SW7 5BD London, United Kingdom 4 Department of Biology, Duke University, Durham, NC 27708-0338, USA ([email protected], [email protected]) Abstract Within the lichen family Verrucariaceae, the genera Endocarpon, Willeya and Staurothele are characterised by muriform ascospores and the presence of algal cells in the hymenium. Endocarpon thalli are squamulose to subfruticose, whereas Willeya and Staurothele include only crustose species. Endocarpon pulvinatum, an arctic-alpine species newly reported for Iceland, is one of the few Endocarpon with a subfruticose thallus formed by long and narrow erected squamules. Molecular phylogenetic analyses of four loci (ITS, nrLSU, mtSSU, and mcm7) newly obtained from E. pulvinatum specimens from Iceland, Finland and North America does not confirm its current classification within the mostly squamulose genus Endocar- pon, but instead supports its placement within the crustose genus Staurothele. The new combination Staurothele pulvinata is therefore proposed here. It includes also E. tortuosum, which was confirmed as a synonym of E. -
Performance of Four Ribosomal DNA Regions to Infer Higher-Level Phylogenetic Relationships of Inoperculate Euascomycetes (Leotiomyceta)
Molecular Phylogenetics and Evolution 34 (2005) 512–524 www.elsevier.com/locate/ympev Performance of four ribosomal DNA regions to infer higher-level phylogenetic relationships of inoperculate euascomycetes (Leotiomyceta) H. Thorsten Lumbscha,¤, Imke Schmitta, Ralf Lindemuthb, Andrew Millerc, Armin Mangolda,b, Fernando Fernandeza, Sabine Huhndorfa a Department of Botany, The Field Museum, 1400 S. Lake Shore Drive, Chicago, IL 60605, USA b Universität Duisburg-Essen, Campus Essen, 45117 Essen, Germany c Center for Biodiversity, Illinois Natural History Survey, 607 E. Peabody Drive, Champaign, IL 61820, USA Received 9 June 2004; revised 14 October 2004 Available online 1 January 2005 Abstract The inoperculate euascomycetes are Wlamentous fungi that form saprobic, parasitic, and symbiotic associations with a wide vari- ety of animals, plants, cyanobacteria, and other fungi. The higher-level relationships of this economically important group have been unsettled for over 100 years. A data set of 55 species was assembled including sequence data from nuclear and mitochondrial small and large subunit rDNAs for each taxon; 83 new sequences were obtained for this study. Parsimony and Bayesian analyses were per- formed using the four-region data set and all 14 possible subpartitions of the data. The mitochondrial LSU rDNA was used for the Wrst time in a higher-level phylogenetic study of ascomycetes and its use in concatenated analyses is supported. The classes that were recognized in Leotiomyceta ( D inoperculate euascomycetes) in a classiWcation by Eriksson and Winka [Myconet 1 (1997) 1] are strongly supported as monophyletic. The following classes formed strongly supported sister-groups: Arthoniomycetes and Doth- ideomycetes, Chaetothyriomycetes and Eurotiomycetes, and Leotiomycetes and Sordariomycetes. -
An All-Taxa Biodiversity Inventory of the Huron Mountain Club
AN ALL-TAXA BIODIVERSITY INVENTORY OF THE HURON MOUNTAIN CLUB Version: August 2016 Cite as: Woods, K.D. (Compiler). 2016. An all-taxa biodiversity inventory of the Huron Mountain Club. Version August 2016. Occasional papers of the Huron Mountain Wildlife Foundation, No. 5. [http://www.hmwf.org/species_list.php] Introduction and general compilation by: Kerry D. Woods Natural Sciences Bennington College Bennington VT 05201 Kingdom Fungi compiled by: Dana L. Richter School of Forest Resources and Environmental Science Michigan Technological University Houghton, MI 49931 DEDICATION This project is dedicated to Dr. William R. Manierre, who is responsible, directly and indirectly, for documenting a large proportion of the taxa listed here. Table of Contents INTRODUCTION 5 SOURCES 7 DOMAIN BACTERIA 11 KINGDOM MONERA 11 DOMAIN EUCARYA 13 KINGDOM EUGLENOZOA 13 KINGDOM RHODOPHYTA 13 KINGDOM DINOFLAGELLATA 14 KINGDOM XANTHOPHYTA 15 KINGDOM CHRYSOPHYTA 15 KINGDOM CHROMISTA 16 KINGDOM VIRIDAEPLANTAE 17 Phylum CHLOROPHYTA 18 Phylum BRYOPHYTA 20 Phylum MARCHANTIOPHYTA 27 Phylum ANTHOCEROTOPHYTA 29 Phylum LYCOPODIOPHYTA 30 Phylum EQUISETOPHYTA 31 Phylum POLYPODIOPHYTA 31 Phylum PINOPHYTA 32 Phylum MAGNOLIOPHYTA 32 Class Magnoliopsida 32 Class Liliopsida 44 KINGDOM FUNGI 50 Phylum DEUTEROMYCOTA 50 Phylum CHYTRIDIOMYCOTA 51 Phylum ZYGOMYCOTA 52 Phylum ASCOMYCOTA 52 Phylum BASIDIOMYCOTA 53 LICHENS 68 KINGDOM ANIMALIA 75 Phylum ANNELIDA 76 Phylum MOLLUSCA 77 Phylum ARTHROPODA 79 Class Insecta 80 Order Ephemeroptera 81 Order Odonata 83 Order Orthoptera 85 Order Coleoptera 88 Order Hymenoptera 96 Class Arachnida 110 Phylum CHORDATA 111 Class Actinopterygii 112 Class Amphibia 114 Class Reptilia 115 Class Aves 115 Class Mammalia 121 INTRODUCTION No complete species inventory exists for any area.