Evolution of Mammals Classifying Mammals
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A Dated Phylogeny of Marsupials Using a Molecular Supermatrix and Multiple Fossil Constraints
Journal of Mammalogy, 89(1):175–189, 2008 A DATED PHYLOGENY OF MARSUPIALS USING A MOLECULAR SUPERMATRIX AND MULTIPLE FOSSIL CONSTRAINTS ROBIN M. D. BECK* School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, New South Wales 2052, Australia Downloaded from https://academic.oup.com/jmammal/article/89/1/175/1020874 by guest on 25 September 2021 Phylogenetic relationships within marsupials were investigated based on a 20.1-kilobase molecular supermatrix comprising 7 nuclear and 15 mitochondrial genes analyzed using both maximum likelihood and Bayesian approaches and 3 different partitioning strategies. The study revealed that base composition bias in the 3rd codon positions of mitochondrial genes misled even the partitioned maximum-likelihood analyses, whereas Bayesian analyses were less affected. After correcting for base composition bias, monophyly of the currently recognized marsupial orders, of Australidelphia, and of a clade comprising Dasyuromorphia, Notoryctes,and Peramelemorphia, were supported strongly by both Bayesian posterior probabilities and maximum-likelihood bootstrap values. Monophyly of the Australasian marsupials, of Notoryctes þ Dasyuromorphia, and of Caenolestes þ Australidelphia were less well supported. Within Diprotodontia, Burramyidae þ Phalangeridae received relatively strong support. Divergence dates calculated using a Bayesian relaxed molecular clock and multiple age constraints suggested at least 3 independent dispersals of marsupials from North to South America during the Late Cretaceous or early Paleocene. Within the Australasian clade, the macropodine radiation, the divergence of phascogaline and dasyurine dasyurids, and the divergence of perameline and peroryctine peramelemorphians all coincided with periods of significant environmental change during the Miocene. An analysis of ‘‘unrepresented basal branch lengths’’ suggests that the fossil record is particularly poor for didelphids and most groups within the Australasian radiation. -
A Phylogeny and Timescale for Marsupial Evolution Based on Sequences for Five Nuclear Genes
J Mammal Evol DOI 10.1007/s10914-007-9062-6 ORIGINAL PAPER A Phylogeny and Timescale for Marsupial Evolution Based on Sequences for Five Nuclear Genes Robert W. Meredith & Michael Westerman & Judd A. Case & Mark S. Springer # Springer Science + Business Media, LLC 2007 Abstract Even though marsupials are taxonomically less diverse than placentals, they exhibit comparable morphological and ecological diversity. However, much of their fossil record is thought to be missing, particularly for the Australasian groups. The more than 330 living species of marsupials are grouped into three American (Didelphimorphia, Microbiotheria, and Paucituberculata) and four Australasian (Dasyuromorphia, Diprotodontia, Notoryctemorphia, and Peramelemorphia) orders. Interordinal relationships have been investigated using a wide range of methods that have often yielded contradictory results. Much of the controversy has focused on the placement of Dromiciops gliroides (Microbiotheria). Studies either support a sister-taxon relationship to a monophyletic Australasian clade or a nested position within the Australasian radiation. Familial relationships within the Diprotodontia have also proved difficult to resolve. Here, we examine higher-level marsupial relationships using a nuclear multigene molecular data set representing all living orders. Protein-coding portions of ApoB, BRCA1, IRBP, Rag1, and vWF were analyzed using maximum parsimony, maximum likelihood, and Bayesian methods. Two different Bayesian relaxed molecular clock methods were employed to construct a timescale for marsupial evolution and estimate the unrepresented basal branch length (UBBL). Maximum likelihood and Bayesian results suggest that the root of the marsupial tree is between Didelphimorphia and all other marsupials. All methods provide strong support for the monophyly of Australidelphia. Within Australidelphia, Dromiciops is the sister-taxon to a monophyletic Australasian clade. -
Perissodactyla: Tapirus) Hints at Subtle Variations in Locomotor Ecology
JOURNAL OF MORPHOLOGY 277:1469–1485 (2016) A Three-Dimensional Morphometric Analysis of Upper Forelimb Morphology in the Enigmatic Tapir (Perissodactyla: Tapirus) Hints at Subtle Variations in Locomotor Ecology Jamie A. MacLaren1* and Sandra Nauwelaerts1,2 1Department of Biology, Universiteit Antwerpen, Building D, Campus Drie Eiken, Universiteitsplein, Wilrijk, Antwerp 2610, Belgium 2Centre for Research and Conservation, Koninklijke Maatschappij Voor Dierkunde (KMDA), Koningin Astridplein 26, Antwerp 2018, Belgium ABSTRACT Forelimb morphology is an indicator for order Perissodactyla (odd-toed ungulates). Modern terrestrial locomotor ecology. The limb morphology of the tapirs are widely accepted to belong to a single enigmatic tapir (Perissodactyla: Tapirus) has often been genus (Tapirus), containing four extant species compared to that of basal perissodactyls, despite the lack (Hulbert, 1973; Ruiz-Garcıa et al., 1985) and sev- of quantitative studies comparing forelimb variation in eral regional subspecies (Padilla and Dowler, 1965; modern tapirs. Here, we present a quantitative assess- ment of tapir upper forelimb osteology using three- Wilson and Reeder, 2005): the Baird’s tapir (T. dimensional geometric morphometrics to test whether bairdii), lowland tapir (T. terrestris), mountain the four modern tapir species are monomorphic in their tapir (T. pinchaque), and the Malayan tapir (T. forelimb skeleton. The shape of the upper forelimb bones indicus). Extant tapirs primarily inhabit tropical across four species (T. indicus; T. bairdii; T. terrestris; T. rainforest, with some populations also occupying pinchaque) was investigated. Bones were laser scanned wet grassland and chaparral biomes (Padilla and to capture surface morphology and 3D landmark analysis Dowler, 1965; Padilla et al., 1996). was used to quantify shape. -
Miocene Mammal Reveals a Mesozoic Ghost Lineage on Insular New Zealand, Southwest Pacific
Miocene mammal reveals a Mesozoic ghost lineage on insular New Zealand, southwest Pacific Trevor H. Worthy*†, Alan J. D. Tennyson‡, Michael Archer§, Anne M. Musser¶, Suzanne J. Hand§, Craig Jonesʈ, Barry J. Douglas**, James A. McNamara††, and Robin M. D. Beck§ *School of Earth and Environmental Sciences, Darling Building DP 418, Adelaide University, North Terrace, Adelaide 5005, South Australia, Australia; ‡Museum of New Zealand Te Papa Tongarewa, P.O. Box 467, Wellington 6015, New Zealand; §School of Biological, Earth and Environmental Sciences, University of New South Wales, New South Wales 2052, Australia; ¶Australian Museum, 6-8 College Street, Sydney, New South Wales 2010, Australia; ʈInstitute of Geological and Nuclear Sciences, P.O. Box 30368, Lower Hutt 5040, New Zealand; **Douglas Geological Consultants, 14 Jubilee Street, Dunedin 9011, New Zealand; and ††South Australian Museum, Adelaide, South Australia 5000, Australia Edited by James P. Kennett, University of California, Santa Barbara, CA, and approved October 11, 2006 (sent for review July 8, 2006) New Zealand (NZ) has long been upheld as the archetypical Ma) dinosaur material (13) and isolated moa bones from marine example of a land where the biota evolved without nonvolant sediments up to 2.5 Ma (1, 14), the terrestrial record older than terrestrial mammals. Their absence before human arrival is mys- 1 Ma is extremely limited. Until now, there has been no direct terious, because NZ was still attached to East Antarctica in the Early evidence for the pre-Pleistocene presence in NZ of any of its Cretaceous when a variety of terrestrial mammals occupied the endemic vertebrate lineages, particularly any group of terrestrial adjacent Australian portion of Gondwana. -
A Species-Level Phylogenetic Supertree of Marsupials
J. Zool., Lond. (2004) 264, 11–31 C 2004 The Zoological Society of London Printed in the United Kingdom DOI:10.1017/S0952836904005539 A species-level phylogenetic supertree of marsupials Marcel Cardillo1,2*, Olaf R. P. Bininda-Emonds3, Elizabeth Boakes1,2 and Andy Purvis1 1 Department of Biological Sciences, Imperial College London, Silwood Park, Ascot SL5 7PY, U.K. 2 Institute of Zoology, Zoological Society of London, Regent’s Park, London NW1 4RY, U.K. 3 Lehrstuhl fur¨ Tierzucht, Technical University of Munich, Alte Akademie 12, 85354 Freising-Weihenstephan, Germany (Accepted 26 January 2004) Abstract Comparative studies require information on phylogenetic relationships, but complete species-level phylogenetic trees of large clades are difficult to produce. One solution is to combine algorithmically many small trees into a single, larger supertree. Here we present a virtually complete, species-level phylogeny of the marsupials (Mammalia: Metatheria), built by combining 158 phylogenetic estimates published since 1980, using matrix representation with parsimony. The supertree is well resolved overall (73.7%), although resolution varies across the tree, indicating variation both in the amount of phylogenetic information available for different taxa, and the degree of conflict among phylogenetic estimates. In particular, the supertree shows poor resolution within the American marsupial taxa, reflecting a relative lack of systematic effort compared to the Australasian taxa. There are also important differences in supertrees based on source phylogenies published before 1995 and those published more recently. The supertree can be viewed as a meta-analysis of marsupial phylogenetic studies, and should be useful as a framework for phylogenetically explicit comparative studies of marsupial evolution and ecology. -
Functional Morphology of the Vertebral Column in Remingtonocetus (Mammalia, Cetacea) and the Evolution of Aquatic Locomotion in Early Archaeocetes
Functional Morphology of the Vertebral Column in Remingtonocetus (Mammalia, Cetacea) and the Evolution of Aquatic Locomotion in Early Archaeocetes by Ryan Matthew Bebej A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy (Ecology and Evolutionary Biology) in The University of Michigan 2011 Doctoral Committee: Professor Philip D. Gingerich, Co-Chair Professor Philip Myers, Co-Chair Professor Daniel C. Fisher Professor Paul W. Webb © Ryan Matthew Bebej 2011 To my wonderful wife Melissa, for her infinite love and support ii Acknowledgments First, I would like to thank each of my committee members. I will be forever grateful to my primary mentor, Philip D. Gingerich, for providing me the opportunity of a lifetime, studying the very organisms that sparked my interest in evolution and paleontology in the first place. His encouragement, patience, instruction, and advice have been instrumental in my development as a scholar, and his dedication to his craft has instilled in me the importance of doing careful and solid research. I am extremely grateful to Philip Myers, who graciously consented to be my co-advisor and co-chair early in my career and guided me through some of the most stressful aspects of life as a Ph.D. student (e.g., preliminary examinations). I also thank Paul W. Webb, for his novel thoughts about living in and moving through water, and Daniel C. Fisher, for his insights into functional morphology, 3D modeling, and mammalian paleobiology. My research was almost entirely predicated on cetacean fossils collected through a collaboration of the University of Michigan and the Geological Survey of Pakistan before my arrival in Ann Arbor. -
The Mesozoic Era Alvarez, W.(1997)
Alles Introductory Biology: Illustrated Lecture Presentations Instructor David L. Alles Western Washington University ----------------------- Part Three: The Integration of Biological Knowledge Vertebrate Evolution in the Late Paleozoic and Mesozoic Eras ----------------------- Vertebrate Evolution in the Late Paleozoic and Mesozoic • Amphibians to Reptiles Internal Fertilization, the Amniotic Egg, and a Water-Tight Skin • The Adaptive Radiation of Reptiles from Scales to Hair and Feathers • Therapsids to Mammals • Dinosaurs to Birds Ectothermy to Endothermy The Evolution of Reptiles The Phanerozoic Eon 444 365 251 Paleozoic Era 542 m.y.a. 488 416 360 299 Camb. Ordov. Sil. Devo. Carbon. Perm. Cambrian Pikaia Fish Fish First First Explosion w/o jaws w/ jaws Amphibians Reptiles 210 65 Mesozoic Era 251 200 180 150 145 Triassic Jurassic Cretaceous First First First T. rex Dinosaurs Mammals Birds Cenozoic Era Last Ice Age 65 56 34 23 5 1.8 0.01 Paleo. Eocene Oligo. Miocene Plio. Ple. Present Early Primate First New First First Modern Cantius World Monkeys Apes Hominins Humans A modern Amphibian—the toad A modern day Reptile—a skink, note the finely outlined scales. A Comparison of Amphibian and Reptile Reproduction The oldest known reptile is Hylonomus lyelli dating to ~ 320 m.y.a.. The earliest or stem reptiles radiated into therapsids leading to mammals, and archosaurs leading to all the other reptile groups including the thecodontians, ancestors of the dinosaurs. Dimetrodon, a Mammal-like Reptile of the Early Permian Dicynodonts were a group of therapsids of the late Permian. Web Reference http://www.museums.org.za/sam/resource/palaeo/cluver/index.html Therapsids experienced an adaptive radiation during the Permian, but suffered heavy extinctions during the end Permian mass extinction. -
Dinner in a Dinosaur
Benchmarks DECEMBER 31, 1853: DINNER IN A DINOSAUR he weather in London on Saturday, Dec. 31, 1853, could On New Year’s Eve, 1853, Benjamin Waterhouse Hawkins hosted not have pleased Benjamin Waterhouse Hawkins. a formal dinner in the mold of an Iguanodon. After a relatively warm Friday, the temperature had plummeted, snow had begun to fall, and for the first to celebrate the “triumphs of industry and art,” and hired Ttime in more than a decade, masses of ice floated down the Hawkins to direct the “Fossil Department.” They tasked him Thames River. The snow made the streets so slippery that with populating a vast geologic display with giant monsters injured pedestrians filled the hospitals. of the ancient world, including the first three dinosaurs ever For New Year’s Eve, Hawkins was hosting an elaborate feast described: Megalosaurus, Iguanodon and Hylaeosaurus. at his sculpting studio in Sydenham, 11 kilometers south of Hawkins was uniquely qualified to bring these great ani- London. Would his guests be able to find transportation out to mals to life. He had initially achieved fame for his detailed Sydenham and then across the pastures of muddy swamp that illustrations of animals collected by British explorers, includ- surrounded the wooden building where the dinner would be ing the still relatively obscure naturalist Charles Darwin. held? Hawkins hoped so; he had been planning the meal for Subsequently, Hawkins started to sculpt, and to write and more than a month. It would be the first time that most of his illustrate books on animal anatomy. For his efforts in taking dinner-mates had seen the incredible life-sized dinosaurs that new scientific findings and translating them into words and he was building for the Crystal Palace Exhibition, which Queen images accessible to the general public, Hawkins earned Victoria and Prince Albert would open to the public in June. -
Transition of Eocene Whales from Land to Sea: Evidence from Bone Microstructure
RESEARCH ARTICLE Transition of Eocene Whales from Land to Sea: Evidence from Bone Microstructure Alexandra Houssaye1,2*, Paul Tafforeau3, Christian de Muizon4, Philip D. Gingerich5 1 UMR 7179 CNRS/Muséum National d’Histoire Naturelle, Département Ecologie et Gestion de la Biodiversité, Paris, France, 2 Steinmann Institut für Geologie, Paläontologie und Mineralogie, Universität Bonn, Bonn, Germany, 3 European Synchrotron Radiation Facility, Grenoble, France, 4 Sorbonne Universités, CR2P—CNRS, MNHN, UPMC-Paris 6, Département Histoire de la Terre, Muséum National d’Histoire Naturelle, Paris, France, 5 Department of Earth and Environmental Sciences and Museum of Paleontology, University of Michigan, Ann Arbor, Michigan, United States of America a11111 * [email protected] Abstract Cetacea are secondarily aquatic amniotes that underwent their land-to-sea transition during OPEN ACCESS the Eocene. Primitive forms, called archaeocetes, include five families with distinct degrees Citation: Houssaye A, Tafforeau P, de Muizon C, of adaptation to an aquatic life, swimming mode and abilities that remain difficult to estimate. Gingerich PD (2015) Transition of Eocene Whales The lifestyle of early cetaceans is investigated by analysis of microanatomical features in from Land to Sea: Evidence from Bone postcranial elements of archaeocetes. We document the internal structure of long bones, Microstructure. PLoS ONE 10(2): e0118409. ribs and vertebrae in fifteen specimens belonging to the three more derived archaeocete doi:10.1371/journal.pone.0118409 families — Remingtonocetidae, Protocetidae, and Basilosauridae — using microtomogra- Academic Editor: Brian Lee Beatty, New York phy and virtual thin-sectioning. This enables us to discuss the osseous specializations ob- Institute of Technology College of Osteopathic Medicine, UNITED STATES served in these taxa and to comment on their possible swimming behavior. -
Megaloceros Giganteus) from the Pleistocene in Poland
Palaeontologia Electronica palaeo-electronica.org Healed antler fracture from a giant deer (Megaloceros giganteus) from the Pleistocene in Poland Kamilla Pawłowska, Krzysztof Stefaniak, and Dariusz Nowakowski ABSTRACT We evaluated the skull of an ancient giant deer with a deformity of one antler. The skull was found in the 1930s in the San River near Barycz, in southeastern Poland. Its dating (39,800±1000 yr BP) corresponds to MIS-3, when the giant deer was wide- spread in Europe. Our diagnostics for the antler included gross morphology, radiogra- phy, computed tomography, and histopathology. We noted signs of fracture healing of the affected antler, including disordered arrangement of lamellae, absence of osteons, and numerous Volkmann’s canals remaining after blood vessel loss. The antler defor- mity appears to be of traumatic origin, with a healing component. No similar evaluation process has been described previously for this species. Kamilla Pawłowska. corresponding author, Institute of Geology, Adam Mickiewicz University, Maków Polnych 16, Poznań 61-606, Poland, [email protected] Krzysztof Stefaniak. Division of Palaeozoology, Department of Evolutionary Biology and Ecology, Faculty of Biological Sciences, University of Wrocław, Sienkiewicza 21, Wrocław 50-335, Poland, [email protected] Dariusz Nowakowski. Department of Anthropology, Wroclaw University of Environmental and Life Sciences, Kożuchowska 6/7, Wrocław 51-631, Poland, [email protected] Keywords: giant deer; Megaloceros giganteus; paleopathology; Pleistocene; Poland INTRODUCTION -
New Record of Terminal Pleistocene Elk/Wapiti (Cervus Canadensis) from Ohio, USA
2 TERMINAL PLEISTOCENE ELK FROM OHIO VOL. 121(2) New Record of Terminal Pleistocene Elk/Wapiti (Cervus canadensis) from Ohio, USA BRIAN G. REDMOND1, Department of Archaeology, Cleveland Museum of Natural History, Cleveland, OH, USA; DAVID L. DYER, Ohio History Connection, Columbus, OH, USA; and CHARLES STEPHENS, Sugar Creek Chapter, Archaeological Society of Ohio, Massillon, OH, USA. ABSTRACT. The earliest appearance of elk/wapiti (Cervus canadensis) in eastern North America is not thoroughly documented due to the small number of directly dated remains. Until recently, no absolute dates on elk bone older than 10,000 14C yr BP (11,621 to 11,306 calibrated years (cal yr) BP) were known from this region. The partial skeleton of the Tope Elk was discovered in 2017 during commercial excavation of peat deposits from a small bog in southeastern Medina County, Ohio, United States. Subsequent examination of the remains revealed the individual to be a robust male approximately 8.5 years old at death. The large size of this individual is compared with late Holocene specimens and suggests diminution of elk since the late Pleistocene. Two accelerator mass spectrometry (AMS) radiocarbon assays on bone collagen samples taken from the scapula and metacarpal of this individual returned ages of 10,270 ± 30 14C yr BP (Beta-477478) (12,154 to 11,835 cal yr BP) and 10,260 ± 30 14C yr BP (Beta-521748) (12,144 to 11,830 cal yr BP), respectively. These results place Cervus canadensis in the terminal Pleistocene of the eastern woodlands and near the establishment of the mixed deciduous forest biome over much of the region. -
Paleontological Discoveries in the Chorrillo Formation (Upper Campanian-Lower Maastrichtian, Upper Cretaceous), Santa Cruz Province, Patagonia, Argentina
Rev. Mus. Argentino Cienc. Nat., n.s. 21(2): 217-293, 2019 ISSN 1514-5158 (impresa) ISSN 1853-0400 (en línea) Paleontological discoveries in the Chorrillo Formation (upper Campanian-lower Maastrichtian, Upper Cretaceous), Santa Cruz Province, Patagonia, Argentina Fernando. E. NOVAS1,2, Federico. L. AGNOLIN1,2,3, Sebastián ROZADILLA1,2, Alexis M. ARANCIAGA-ROLANDO1,2, Federico BRISSON-EGLI1,2, Matias J. MOTTA1,2, Mauricio CERRONI1,2, Martín D. EZCURRA2,5, Agustín G. MARTINELLI2,5, Julia S. D´ANGELO1,2, Gerardo ALVAREZ-HERRERA1, Adriel R. GENTIL1,2, Sergio BOGAN3, Nicolás R. CHIMENTO1,2, Jordi A. GARCÍA-MARSÀ1,2, Gastón LO COCO1,2, Sergio E. MIQUEL2,4, Fátima F. BRITO4, Ezequiel I. VERA2,6, 7, Valeria S. PEREZ LOINAZE2,6 , Mariela S. FERNÁNDEZ8 & Leonardo SALGADO2,9 1 Laboratorio de Anatomía Comparada y Evolución de los Vertebrados. Museo Argentino de Ciencias Naturales “Bernardino Rivadavia”, Avenida Ángel Gallardo 470, Buenos Aires C1405DJR, Argentina - fernovas@yahoo. com.ar. 2 Consejo Nacional de Investigaciones Científicas y Técnicas, Argentina. 3 Fundación de Historia Natural “Felix de Azara”, Universidad Maimonides, Hidalgo 775, C1405BDB Buenos Aires, Argentina. 4 Laboratorio de Malacología terrestre. División Invertebrados Museo Argentino de Ciencias Naturales “Bernardino Rivadavia”, Avenida Ángel Gallardo 470, Buenos Aires C1405DJR, Argentina. 5 Sección Paleontología de Vertebrados. Museo Argentino de Ciencias Naturales “Bernardino Rivadavia”, Avenida Ángel Gallardo 470, Buenos Aires C1405DJR, Argentina. 6 División Paleobotánica. Museo Argentino de Ciencias Naturales “Bernardino Rivadavia”, Avenida Ángel Gallardo 470, Buenos Aires C1405DJR, Argentina. 7 Área de Paleontología. Departamento de Geología, Universidad de Buenos Aires, Pabellón 2, Ciudad Universitaria (C1428EGA) Buenos Aires, Argentina. 8 Instituto de Investigaciones en Biodiversidad y Medioambiente (CONICET-INIBIOMA), Quintral 1250, 8400 San Carlos de Bariloche, Río Negro, Argentina.