Antimicrobial Susceptibility Patterns of Unusual Nonfermentative Gram
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Uncommon Pathogens Causing Hospital-Acquired Infections in Postoperative Cardiac Surgical Patients
Published online: 2020-03-06 THIEME Review Article 89 Uncommon Pathogens Causing Hospital-Acquired Infections in Postoperative Cardiac Surgical Patients Manoj Kumar Sahu1 Netto George2 Neha Rastogi2 Chalatti Bipin1 Sarvesh Pal Singh1 1Department of Cardiothoracic and Vascular Surgery, CN Centre, All Address for correspondence Manoj K Sahu, MD, DNB, Department India Institute of Medical Sciences, Ansari Nagar, New Delhi, India of Cardiothoracic and Vascular Surgery, CTVS office, 7th floor, CN 2Infectious Disease, Department of Medicine, All India Institute of Centre, All India Institute of Medical Sciences, New Delhi-110029, Medical Sciences, Ansari Nagar, New Delhi, India India (e-mail: [email protected]). J Card Crit Care 2020;3:89–96 Abstract Bacterial infections are common causes of sepsis in the intensive care units. However, usually a finite number of Gram-negative bacteria cause sepsis (mostly according to the hospital flora). Some organisms such as Escherichia coli, Acinetobacter baumannii, Klebsiella pneumoniae, Pseudomonas aeruginosa, and Staphylococcus aureus are relatively common. Others such as Stenotrophomonas maltophilia, Chryseobacterium indologenes, Shewanella putrefaciens, Ralstonia pickettii, Providencia, Morganella species, Nocardia, Elizabethkingia, Proteus, and Burkholderia are rare but of immense importance to public health, in view of the high mortality rates these are associated with. Being aware of these organisms, as the cause of hospital-acquired infections, helps in the prevention, Keywords treatment, and control of sepsis in the high-risk cardiac surgical patients including in ► uncommon pathogens heart transplants. Therefore, a basic understanding of when to suspect these organ- ► hospital-acquired isms is important for clinical diagnosis and initiating therapeutic options. This review infection discusses some rarely appearing pathogens in our intensive care unit with respect to ► cardiac surgical the spectrum of infections, and various antibiotics that were effective in managing intensive care unit these bacteria. -
Sonication Contribution to Identifying Prosthetic Joint Infection With
Birlutiu et al. BMC Musculoskeletal Disorders (2017) 18:311 DOI 10.1186/s12891-017-1678-y CASE REPORT Open Access Sonication contribution to identifying prosthetic joint infection with Ralstonia pickettii: a case report and review of the literature Rares Mircea Birlutiu1*, Mihai Dan Roman2, Razvan Silviu Cismasiu3, Sorin Radu Fleaca2, Crina Maria Popa4, Manuela Mihalache5 and Victoria Birlutiu6 Abstract Background: In the context of an increase number of primary and revision total hip and total knee arthroplasty performed yearly, an increased risk of complication is expected. Prosthetic joint infection (PJI) remains the most common and feared arthroplasty complication. Ralstonia pickettii is a Gram-negative bacterium, that has also been identified in biofilms. It remains an extremely rare cause of PJI. There is no report of an identification of R. pickettii on an extracted spacer loaded with antibiotic. Case presentation: We present the case of an 83-years-old Caucasian male patient, that underwent a right cemented total hip replacement surgery. The patient is diagnosed with an early PJI with no isolated microorganism. A debridement and change of mobile parts is performed. At the beginning of 2016, the patient in readmitted into the Orthopedic Department for sever, right abdominal and groin pain and elevated serum erythrocyte sedimentation rate and C-reactive protein. A joint aspiration is performed with a negative microbiological examination. A two-stage exchange with long interval management is adopted, and a preformed spacer loaded with gentamicin was implanted. In July 2016, based on the proinflammatory markers evolution, a shift a three-stage exchange strategy is decided. In September 2016, a debridement, and changing of the preformed spacer loaded with gentamicin with another was carried out. -
Cultivation of Microorganisms from Basaltic Rock
Edwards, K.J., Bach, W., Klaus, A., and the Expedition 336 Scientists Proceedings of the Integrated Ocean Drilling Program, Volume 336 Data report: cultivation of microorganisms from basaltic rock and sediment cores from the North Pond on the western flank of the Mid-Atlantic Ridge, IODP Expedition 3361 Hisako Hirayama,2 Mariko Abe,2 Junichi Miyazaki,2 Sanae Sakai,2 Yuriko Nagano,3 and Ken Takai2 Chapter contents Abstract Abstract . 1 Cultivation experiments targeting chemolithoautotrophic micro- organisms were performed using subseafloor basaltic cores (the Introduction . 1 deepest sample is from 315 meters below seafloor [mbsf] and Materials and methods . 2 overlying sediment cores (the deepest sample is from 91.4 mbsf) Results . 4 from North Pond on the western flank of the Mid-Atlantic Ridge. Acknowledgments. 5 The cores were recovered by the R/V JOIDES Resolution during Inte- References . 5 grated Ocean Drilling Program Expedition 336. Different bacteria Figure. 8 were grown under different media and temperature conditions. In Tables. 9 the enrichment cultures of the basaltic cores under aerobic condi- tions, frequently detected bacteria at 8°C and 25°C were members of the genera Ralstonia (the class Betaproteobacteria) and Pseudo- monas (Gammaproteobacteria), whereas members of the genera Paenibacillus (Bacilli) and Acidovorax (Betaproteobacteria) were conspicuous at 37°C. Bacillus spp. (Bacilli) were outstanding at 37°C under anaerobic conditions. In the enriched cultures of the sediment cores, bacterial growth was observed at 15°C but not at 37°C, and the bacteria detected at 15°C mostly belonged to gam- maproteobacterial genera such as Pseudomonas, Halomonas, and Marinobacter. -
Targeting the Burkholderia Cepacia Complex
viruses Review Advances in Phage Therapy: Targeting the Burkholderia cepacia Complex Philip Lauman and Jonathan J. Dennis * Department of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada; [email protected] * Correspondence: [email protected]; Tel.: +1-780-492-2529 Abstract: The increasing prevalence and worldwide distribution of multidrug-resistant bacterial pathogens is an imminent danger to public health and threatens virtually all aspects of modern medicine. Particularly concerning, yet insufficiently addressed, are the members of the Burkholderia cepacia complex (Bcc), a group of at least twenty opportunistic, hospital-transmitted, and notoriously drug-resistant species, which infect and cause morbidity in patients who are immunocompromised and those afflicted with chronic illnesses, including cystic fibrosis (CF) and chronic granulomatous disease (CGD). One potential solution to the antimicrobial resistance crisis is phage therapy—the use of phages for the treatment of bacterial infections. Although phage therapy has a long and somewhat checkered history, an impressive volume of modern research has been amassed in the past decades to show that when applied through specific, scientifically supported treatment strategies, phage therapy is highly efficacious and is a promising avenue against drug-resistant and difficult-to-treat pathogens, such as the Bcc. In this review, we discuss the clinical significance of the Bcc, the advantages of phage therapy, and the theoretical and clinical advancements made in phage therapy in general over the past decades, and apply these concepts specifically to the nascent, but growing and rapidly developing, field of Bcc phage therapy. Keywords: Burkholderia cepacia complex (Bcc); bacteria; pathogenesis; antibiotic resistance; bacterio- phages; phages; phage therapy; phage therapy treatment strategies; Bcc phage therapy Citation: Lauman, P.; Dennis, J.J. -
Management of Initial Colonisations with Burkholderia Species in France
Gruzelle et al. BMC Pulmonary Medicine (2020) 20:159 https://doi.org/10.1186/s12890-020-01190-y RESEARCH ARTICLE Open Access Management of initial colonisations with Burkholderia species in France, with retrospective analysis in five cystic fibrosis Centres: a pilot study Vianney Gruzelle1 , Hélène Guet-Revillet2,3, Christine Segonds3, Stéphanie Bui4, Julie Macey5, Raphaël Chiron6, Marine Michelet1, Marlène Murris-Espin7 and Marie Mittaine1* Abstract Background: Whereas Burkholderia infections are recognized to impair prognosis in cystic fibrosis (CF) patients, there is no recommendation to date for early eradication therapy. The aim of our study was to analyse the current management of initial colonisations with Burkholderia cepacia complex (BCC) or B. gladioli in French CF Centres and its impact on bacterial clearance and clinical outcome. Methods: We performed a retrospective review of the primary colonisations (PC), defined as newly positive sputum cultures, observed between 2010 and 2018 in five CF Centres. Treatment regimens, microbiological and clinical data were collected. Results: Seventeen patients (14 with BCC, and 3 with B. gladioli) were included. Eradication therapy, using heterogeneous combinations of intravenous, oral or nebulised antibiotics, was attempted in 11 patients. Six out of the 11 treated patients, and 4 out of the 6 untreated patients cleared the bacterium. Though not statistically significant, higher forced expiratory volume in 1 second and forced vital capacity at PC and consistency of treatment with in vitro antibiotic susceptibility tended to be associated with eradication. The management of PC was shown to be heterogeneous, thus impairing the statistical power of our study. Large prospective studies are needed to define whom to treat, when, and how. -
Broad-Spectrum Antimicrobial Activity by Burkholderia Cenocepacia Tatl-371, a Strain Isolated from the Tomato Rhizosphere
RESEARCH ARTICLE Rojas-Rojas et al., Microbiology DOI 10.1099/mic.0.000675 Broad-spectrum antimicrobial activity by Burkholderia cenocepacia TAtl-371, a strain isolated from the tomato rhizosphere Fernando Uriel Rojas-Rojas,1 Anuar Salazar-Gómez,1 María Elena Vargas-Díaz,1 María Soledad Vasquez-Murrieta, 1 Ann M. Hirsch,2,3 Rene De Mot,4 Maarten G. K. Ghequire,4 J. Antonio Ibarra1,* and Paulina Estrada-de los Santos1,* Abstract The Burkholderia cepacia complex (Bcc) comprises a group of 24 species, many of which are opportunistic pathogens of immunocompromised patients and also are widely distributed in agricultural soils. Several Bcc strains synthesize strain- specific antagonistic compounds. In this study, the broad killing activity of B. cenocepacia TAtl-371, a Bcc strain isolated from the tomato rhizosphere, was characterized. This strain exhibits a remarkable antagonism against bacteria, yeast and fungi including other Bcc strains, multidrug-resistant human pathogens and plant pathogens. Genome analysis of strain TAtl-371 revealed several genes involved in the production of antagonistic compounds: siderophores, bacteriocins and hydrolytic enzymes. In pursuit of these activities, we observed growth inhibition of Candida glabrata and Paraburkholderia phenazinium that was dependent on the iron concentration in the medium, suggesting the involvement of siderophores. This strain also produces a previously described lectin-like bacteriocin (LlpA88) and here this was shown to inhibit only Bcc strains but no other bacteria. Moreover, a compound with an m/z 391.2845 with antagonistic activity against Tatumella terrea SHS 2008T was isolated from the TAtl-371 culture supernatant. This strain also contains a phage-tail-like bacteriocin (tailocin) and two chitinases, but the activity of these compounds was not detected. -
Outbreak of Ralstonia Mannitolilytica Bacteraemia in Patients Undergoing Haemodialysis at a Tertiary Hospital in Pretoria, South
Said et al. Antimicrobial Resistance and Infection Control (2020) 9:117 https://doi.org/10.1186/s13756-020-00778-7 RESEARCH Open Access Outbreak of Ralstonia mannitolilytica bacteraemia in patients undergoing haemodialysis at a tertiary hospital in Pretoria, South Africa Mohamed Said1* , Wesley van Hougenhouck-Tulleken2,3, Rashmika Naidoo1, Nontombi Mbelle1,4 and Farzana Ismail4,5 Abstract Background: Ralstonia species are Gram-negative bacilli of low virulence. These organisms are capable of causing healthcare associated infections through contaminated solutions. In this study, we aimed to determine the source of Ralstonia mannitolilytica bacteraemia in affected patients in a haemodialysis unit. Methods: Our laboratory noted an increase in cases of bacteraemia caused by Ralstonia mannitililytica between May and June 2016. All affected patients underwent haemodialysis at the haemodialysis unit of an academic hospital. The reverse osmosis filter of the haemodialysis water system was found to be dysfunctional. We collected water for culture at various points of the dialysis system to determine the source of the organism implicated. ERIC-PCR was used to determine relatedness of patient and environmental isolates. Results: Sixteen patients were found to have Ralstonia mannitolilytica bacteraemia during the outbreak period. We cultured Ralstonia spp. from water collected in the dialysis system. This isolate and patient isolates were found to have the identical molecular banding pattern. Conclusions: All patients were septic and received directed antibiotic therapy. There was 1 mortality. The source of the R. mannitolilytica infection in these patients was most likely the dialysis water as the identical organism was cultured from the dialysis water and the patients. The hospital management intervened and repaired the dialysis water system following which no further cases of R. -
Horizontal Gene Transfer to a Defensive Symbiont with a Reduced Genome
bioRxiv preprint doi: https://doi.org/10.1101/780619; this version posted September 24, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Horizontal gene transfer to a defensive symbiont with a reduced genome 2 amongst a multipartite beetle microbiome 3 Samantha C. Waterwortha, Laura V. Flórezb, Evan R. Reesa, Christian Hertweckc,d, 4 Martin Kaltenpothb and Jason C. Kwana# 5 6 Division of Pharmaceutical Sciences, School of Pharmacy, University of Wisconsin- 7 Madison, Madison, Wisconsin, USAa 8 Department of Evolutionary Ecology, Institute of Organismic and Molecular Evolution, 9 Johannes Gutenburg University, Mainz, Germanyb 10 Department of Biomolecular Chemistry, Leibniz Institute for Natural Products Research 11 and Infection Biology, Jena, Germanyc 12 Department of Natural Product Chemistry, Friedrich Schiller University, Jena, Germanyd 13 14 #Address correspondence to Jason C. Kwan, [email protected] 15 16 17 18 1 bioRxiv preprint doi: https://doi.org/10.1101/780619; this version posted September 24, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 19 ABSTRACT 20 The loss of functions required for independent life when living within a host gives rise to 21 reduced genomes in obligate bacterial symbionts. Although this phenomenon can be 22 explained by existing evolutionary models, its initiation is not well understood. -
Project Title: Reducing Bacterial Infection in Seed Onions Through the Use of Plant Elicitors
Project title: Reducing bacterial infection in seed onions through the use of plant elicitors Project number: FV 393 Project leader: Nicola J. Holden, The James Hutton Institute Report: Final report, January 2012 Previous report: None Key staff: Nicola J. Holden Ian Toth Adrian Newton Katrin Mackenzie (BioSS) – statistical analysis Location of project: The James Hutton Institute, Invergowrie, Dundee Industry Representative: Andy Richardson, Allium and Brassica Centre, Wash Road, Kirton, Boston, Lincs. PE20 1QQ Date project commenced: 01/04/2011 Date project completed 31/12/2011 (or expected completion date): DISCLAIMER AHDB, operating through its HDC division seeks to ensure that the information contained within this document is accurate at the time of printing. No warranty is given in respect thereof and, to the maximum extent permitted by law the Agriculture and Horticulture Development Board accepts no liability for loss, damage or injury howsoever caused (including that caused by negligence) or suffered directly or indirectly in relation to information and opinions contained in or omitted from this document. Copyright, Agriculture and Horticulture Development Board 2012. All rights reserved. No part of this publication may be reproduced in any material form (including by photocopy or storage in any medium by electronic means) or any copy or adaptation stored, published or distributed (by physical, electronic or other means) without the prior permission in writing of the Agriculture and Horticulture Development Board, other than by reproduction in an unmodified form for the sole purpose of use as an information resource when the Agriculture and Horticulture Development Board or HDC is clearly acknowledged as the source, or in accordance with the provisions of the Copyright, Designs and Patents Act 1988. -
Good and Bad Guys Burkholderia
F1000Research 2016, 5(F1000 Faculty Rev):1007 Last updated: 17 JUL 2019 REVIEW Members of the genus Burkholderia: good and bad guys [version 1; peer review: 3 approved] Leo Eberl1, Peter Vandamme2 1Department of Plant and Microbial Biology, University Zürich, Zurich, CH-8008, Switzerland 2Laboratory of Microbiology, Ghent University, Ledeganckstraat 35, B-9000 Gent, Belgium First published: 26 May 2016, 5(F1000 Faculty Rev):1007 ( Open Peer Review v1 https://doi.org/10.12688/f1000research.8221.1) Latest published: 26 May 2016, 5(F1000 Faculty Rev):1007 ( https://doi.org/10.12688/f1000research.8221.1) Reviewer Status Abstract Invited Reviewers In the 1990s several biocontrol agents on that contained Burkholderia 1 2 3 strains were registered by the United States Environmental Protection Agency (EPA). After risk assessment these products were withdrawn from version 1 the market and a moratorium was placed on the registration of Burkholderia published -containing products, as these strains may pose a risk to human health. 26 May 2016 However, over the past few years the number of novel Burkholderia species that exhibit plant-beneficial properties and are normally not isolated from infected patients has increased tremendously. In this commentary we wish F1000 Faculty Reviews are written by members of to summarize recent efforts that aim at discerning pathogenic from the prestigious F1000 Faculty. They are beneficial Burkholderia strains. commissioned and are peer reviewed before publication to ensure that the final, published version is comprehensive and accessible. The reviewers who approved the final version are listed with their names and affiliations. 1 Gabriele Berg, Graz University of Technology, Graz, Austria 2 Jorge Leitão, Instituto Superior Técnico, Lisboa, Portugal 3 Vittorio Venturi, International Centre for Genetic Engineering and Biotechnology, Trieste, Italy Any comments on the article can be found at the end of the article. -
Ralstonia Picketti Neonatal Sepsis: a Case Report Deepak Sharma1*, Pradeep Sharma2, Priyanka Soni3 and Basudev Gupta4
Sharma et al. BMC Res Notes (2017) 10:28 DOI 10.1186/s13104-016-2347-1 BMC Research Notes CASE REPORT Open Access Ralstonia picketti neonatal sepsis: a case report Deepak Sharma1*, Pradeep Sharma2, Priyanka Soni3 and Basudev Gupta4 Abstract Background: Ralstonia genus are gram negative bacillus and includes four bacteria namely Ralstonia picketti, Ral- stonia Solanacearum, Ralstonia insidiosa and Ralstonia mannitolilytica. These are opportunistic pathogens and cause infections in immunocompromised host. The sources of infection are usually contaminated solutions and water. The majority of the reported cases are caused by R. picketti. It is very rare cause of neonatal sepsis with less than twenty cases reported in literature till date. Case presentation: A late preterm male infant, Indian race was admitted to the neonatal intensive care unit for respiratory distress developing soon after birth. The infant was managed with respiratory support and gradually infant improved and diagnosis of transient tachypnea of newborn was made. At age of 84 h of postnatal life, the infant developed features of neonatal sepsis and investigations were suggestive of sepsis. The infant was started on intravenous antibiotic, multiple vasopressors and steroids. The blood culture showed growth of multi-drug resistant R. picketti. The antibiotics were changed as per sensitivity pattern and infant was discharged in good condition and was accepting breast feeding at the time of discharge. There was also no other case of R. picketti in the nursery during the same time period. Conclusion: Ralstonia picketti is an uncommon cause of neonatal sepsis and usually source of infection are con- taminated solutions and medical products. -
Intestinal Ralstonia Pickettii Augments Glucose Intolerance in Obesity
RESEARCH ARTICLE Intestinal Ralstonia pickettii augments glucose intolerance in obesity Shanthadevi D. Udayappan1, Petia Kovatcheva-Datchary2, Guido J. Bakker1, Stefan R. Havik1, Hilde Herrema1*, Patrice D. Cani3, Kristien E. Bouter1, Clara Belzer4, Julia J. Witjes1, Anne Vrieze5, Noor de Sonnaville5, Alice Chaplin1, Daniel H. van Raalte6,7, Steven Aalvink4, Geesje M. Dallinga-Thie1, Hans G. H. J. Heilig4, GoÈran BergstroÈ m2, Suzan van der Meij8, Bart A. van Wagensveld9, Joost B. L. Hoekstra5, Frits Holleman5, Erik S. G. Stroes1, Albert K. Groen1,10, Fredrik BaÈckhed2,11, Willem M. de Vos4,12, Max Nieuwdorp1,2,5,6,7* a1111111111 1 Department of Vascular Medicine, Academic Medical Center, Amsterdam, The Netherlands, 2 Wallenberg a1111111111 Laboratory, University of Gothenburg, Sahlgrenska University Hospital, Gothenburg, Sweden, 3 Universite a1111111111 catholique de Louvain, WELBIO (Walloon Excellence in Life sciences and BIOtechnology), Louvain Drug a1111111111 Research Institute, Brussels, Belgium, 4 Laboratory of Microbiology, Wageningen University, Wageningen, a1111111111 The Netherlands, 5 Department of Internal Medicine, Academic Medical Center, Amsterdam, The Netherlands, 6 Diabetes Center, Department of Internal medicine, VU University Medical Center, Amsterdam, The Netherlands, 7 ICAR, VU University Medical Center, Amsterdam, The Netherlands, 8 Department of Surgery, Flevo Hospital, Almere, The Netherlands, 9 Department of Surgery, Sint Lucas Andreas Hospital, Amsterdam, The Netherlands, 10 Department of Pediatrics, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands, 11 Novo Nordisk Foundation Center for OPEN ACCESS Basic Metabolic Research, Section for Metabolic Receptology and Enteroendocrinology, Faculty of Health Sciences, University of Copenhagen, Copenhagen, Denmark, 12 RPU Immunobiology, University of Citation: Udayappan SD, Kovatcheva-Datchary P, Helsinki, Helsinki, Finland Bakker GJ, Havik SR, Herrema H, Cani PD, et al.