The VDAC1 N-Terminus Is Essential Both for Apoptosis and the Protective Effect of Anti-Apoptotic Proteins
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VDAC1 Selectively Transfers Apoptotic Ca2&Plus; Signals to Mitochondria
Cell Death and Differentiation (2012) 19, 267–273 & 2012 Macmillan Publishers Limited All rights reserved 1350-9047/12 www.nature.com/cdd VDAC1 selectively transfers apoptotic Ca2 þ signals to mitochondria D De Stefani1, A Bononi2, A Romagnoli1, A Messina3, V De Pinto3, P Pinton2 and R Rizzuto*,1 Voltage-dependent anion channels (VDACs) are expressed in three isoforms, with common channeling properties and different roles in cell survival. We show that VDAC1 silencing potentiates apoptotic challenges, whereas VDAC2 has the opposite effect. Although all three VDAC isoforms are equivalent in allowing mitochondrial Ca2 þ loading upon agonist stimulation, VDAC1 silencing selectively impairs the transfer of the low-amplitude apoptotic Ca2 þ signals. Co-immunoprecipitation experiments show that VDAC1, but not VDAC2 and VDAC3, forms complexes with IP3 receptors, an interaction that is further strengthened by apoptotic stimuli. These data highlight a non-redundant molecular route for transferring Ca2 þ signals to mitochondria in apoptosis. Cell Death and Differentiation (2012) 19, 267–273; doi:10.1038/cdd.2011.92; published online 1 July 2011 Voltage-dependent anion channels (VDACs), the most Mitochondrial [Ca2 þ ] is commonly regarded as an impor- abundant proteins of the outer mitochondrial membrane tant determinant in cell sensitivity to apoptotic stimuli.21 (OMM), mediate the exchange of ions and metabolites Indeed, mitochondrial Ca2 þ accumulation acts as a ‘priming between the cytoplasm and mitochondria, and are key factors signal’ sensitizing the organelle and promoting the release of in many cellular processes, ranging from metabolism regula- caspase cofactors, both in isolated mitochondria as well as in tion to cell death. -
A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated. -
Transcriptomic Analysis of Native Versus Cultured Human and Mouse Dorsal Root Ganglia Focused on Pharmacological Targets Short
bioRxiv preprint doi: https://doi.org/10.1101/766865; this version posted September 12, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. Transcriptomic analysis of native versus cultured human and mouse dorsal root ganglia focused on pharmacological targets Short title: Comparative transcriptomics of acutely dissected versus cultured DRGs Andi Wangzhou1, Lisa A. McIlvried2, Candler Paige1, Paulino Barragan-Iglesias1, Carolyn A. Guzman1, Gregory Dussor1, Pradipta R. Ray1,#, Robert W. Gereau IV2, # and Theodore J. Price1, # 1The University of Texas at Dallas, School of Behavioral and Brain Sciences and Center for Advanced Pain Studies, 800 W Campbell Rd. Richardson, TX, 75080, USA 2Washington University Pain Center and Department of Anesthesiology, Washington University School of Medicine # corresponding authors [email protected], [email protected] and [email protected] Funding: NIH grants T32DA007261 (LM); NS065926 and NS102161 (TJP); NS106953 and NS042595 (RWG). The authors declare no conflicts of interest Author Contributions Conceived of the Project: PRR, RWG IV and TJP Performed Experiments: AW, LAM, CP, PB-I Supervised Experiments: GD, RWG IV, TJP Analyzed Data: AW, LAM, CP, CAG, PRR Supervised Bioinformatics Analysis: PRR Drew Figures: AW, PRR Wrote and Edited Manuscript: AW, LAM, CP, GD, PRR, RWG IV, TJP All authors approved the final version of the manuscript. 1 bioRxiv preprint doi: https://doi.org/10.1101/766865; this version posted September 12, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
1 PDK4 Augments ER-Mitochondria Contact to Dampen Skeletal Muscle
Page 1 of 91 Diabetes PDK4 augments ER-mitochondria contact to dampen skeletal muscle insulin signaling during obesity Themis Thoudam1,2*, Chae-Myeong Ha1,2*, Jaechan Leem3*, Dipanjan Chanda4*, Jong-Seok Park5, Hyo-Jeong Kim6, Jae-Han Jeon4,7, Yeon-Kyung Choi4,7, Suthat Liangpunsakul 8,9,10, Yang Hoon Huh6, Tae-Hwan Kwon1,2, Keun-Gyu Park4,7, Robert A. Harris9, Kyu-Sang Park11, Hyun-Woo Rhee12 & In-Kyu Lee1,2,4,7 Affiliations 1Department of Biomedical Science, Graduate School, 2BK21 Plus KNU Biomedical Convergence Program, Kyungpook National University, Daegu, Republic of Korea, Department of Immunology, School of Medicine, 3Catholic University of Daegu, Daegu, Republic of Korea, 4Leading-edge Research Center for drug Discovery & Development for Diabetes & Metabolic Disease, Daegu, Republic of Korea, 5Department of Chemistry, Ulsan National Institute of Science and Technology, Ulsan, Republic of Korea, 6Electron Microscopy Research Center, Korea Basic Science Institute, Ochang, Chungbuk, Republic of Korea, 7Department of Internal Medicine, School of Medicine, Kyungpook National University, Daegu, Republic of Korea, 8Division of Gastroenterology and Hepatology, Department of Medicine, Indiana University School of Medicine, Indianapolis, IN, USA, 9Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN, USA, 10Roudebush Veterans Administration Medical Center, Indianapolis, IN, USA, 11Department of Physiology, Institute of Lifestyle Medicine, Yonsei University Wonju College of Medicine, Gangwon-Do, Republic of Korea, 12Department of Chemistry, Seoul National University, Seoul, Republic of Korea. *These authors contributed equally to this work. 1 Diabetes Publish Ahead of Print, published online December 6, 2018 Diabetes Page 2 of 91 Correspondence to In Kyu Lee, M.D., Ph.D. -
Difluoromethylornithine Attenuates Isoproterenol‑Induced Cardiac Hypertrophy by Regulating Apoptosis, Autophagy and the Mitochondria‑Associated Membranes Pathway
EXPERIMENTAL AND THERAPEUTIC MEDICINE 22: 870, 2021 Difluoromethylornithine attenuates isoproterenol‑induced cardiac hypertrophy by regulating apoptosis, autophagy and the mitochondria‑associated membranes pathway YU ZHAO*, WEI‑WEI JIA*, SAN REN, WEI XIAO, GUANG‑WEI LI, LI JIN and YAN LIN Department of Pathophysiology, Qiqihar Medical University, Qiqihar, Heilongjiang 161006, P.R. China Received October 9, 2020; Accepted April 28, 2021 DOI: 10.3892/etm.2021.10302 Abstract. Myocardial hypertrophy is an independent risk Introduction factor of cardiovascular diseases and is closely associated with the incidence of heart failure. In the present study, we The initial stage of cardiac hypertrophy is an adaptive hypothesized that difluoromethylornithine (DFMO) could response in volume related to hypertension, valvular disease attenuate cardiac hypertrophy through mitochondria‑associ‑ or neurohumoral stimuli. The decompensated stage of patho‑ ated membranes (MAM) and autophagy. Cardiac hypertrophy logical hypertrophy leads to contractile dysfunction and heart was induced in male rats by intravenous administration of failure (HF) (1,2). Mitochondria serve crucial biological roles isoproterenol (ISO; 5 mg/kg/day) for 1, 3,7 and 14 days. For in excitation‑contraction coupling in cardiac muscle, cellular DFMO treatment group, rats were given ISO (5 mg/kg/day) metabolism, HF progression and myocardial ischemia/reper‑ for 14 days and 2% DFMO in their water for 4 weeks. The fusion (3‑5). It has been hypothesized that abnormalities in expression of atrial natriuretic peptide (ANP) mRNA,heart mitochondrial function and endoplasmic reticulum (ER) may parameters, apoptosis rate, fibrotic area and protein expres‑ be related to cardiomyopathy (6,7). sions of cleaved caspase3/9, GRP75, Mfn2, CypD and Increasing evidence suggests that mitochondria and the VDAC1 were measured to confirm the development of cardiac ER are organelles that form an endomembrane network. -
Is VDAC a Regulated Gatekeeper of Mitochondrial Calcium Uptake?
International Journal of Molecular Sciences Review A Calcium Guard in the Outer Membrane: Is VDAC a Regulated Gatekeeper of Mitochondrial Calcium Uptake? Paulina Sander 1 , Thomas Gudermann 1,2 and Johann Schredelseker 1,2,* 1 Walther Straub Institute of Pharmacology and Toxicology, Faculty of Medicine, LMU Munich, 80336 Munich, Germany; [email protected] (P.S.); [email protected] (T.G.) 2 Deutsches Zentrum für Herz-Kreislauf-Forschung, Partner Site Munich Heart Alliance, Munich, Germany * Correspondence: [email protected]; Tel.: +49-(0)89-2180-73831 Abstract: Already in the early 1960s, researchers noted the potential of mitochondria to take up large amounts of Ca2+. However, the physiological role and the molecular identity of the mitochondrial Ca2+ uptake mechanisms remained elusive for a long time. The identification of the individual components of the mitochondrial calcium uniporter complex (MCUC) in the inner mitochondrial membrane in 2011 started a new era of research on mitochondrial Ca2+ uptake. Today, many studies investigate mitochondrial Ca2+ uptake with a strong focus on function, regulation, and localization of the MCUC. However, on its way into mitochondria Ca2+ has to pass two membranes, and the first barrier before even reaching the MCUC is the outer mitochondrial membrane (OMM). The common opinion is that the OMM is freely permeable to Ca2+. This idea is supported by the presence of a high density of voltage-dependent anion channels (VDACs) in the OMM, forming large Ca2+ permeable pores. However, several reports challenge this idea and describe VDAC as a regulated Ca2+ channel. 2+ In line with this idea is the notion that its Ca selectivity depends on the open state of the channel, and its gating behavior can be modified by interaction with partner proteins, metabolites, or small 2+ Citation: Sander, P.; Gudermann, T.; synthetic molecules. -
The Roles of Mitochondria-Associated Membranes in Mitochondrial Quality Control Under Endoplasmic Reticulum Stress
Life Sciences 231 (2019) 116587 Contents lists available at ScienceDirect Life Sciences journal homepage: www.elsevier.com/locate/lifescie Review article The roles of mitochondria-associated membranes in mitochondrial quality control under endoplasmic reticulum stress T ⁎ ⁎⁎ Beiwu Lana, Yichun Hea, Hongyu Sunb, Xinzi Zhengb, Yufei Gaoa, ,NaLib, a Department of Neurosurgery, China-Japan Union Hospital, Jilin University, Changchun, Jilin, China b Department of Pathophysiology, Key Laboratory of Pathobiology, Ministry of Education, College of Basic Medical Sciences, Jilin University, Changchun, Jilin, China ARTICLE INFO ABSTRACT Keywords: The endoplasmic reticulum (ER) and mitochondria are two important organelles in cells. Mitochondria-asso- Endoplasmic reticulum stress ciated membranes (MAMs) are lipid raft-like domains formed in the ER membranes that are in close apposition Mitochondrial quality control to mitochondria. They play an important role in signal transmission between these two essential organelles. Mitochondria associated membranes When cells are exposed to internal or external stressful stimuli, the ER will activate an adaptive response called Ca2+ the ER stress response, which has a significant effect on mitochondrial function. Mitochondrial quality control is an important mechanism to ensure the functional integrity of mitochondria and the effect of ER stress on mi- tochondrial quality control through MAMs is of great significance. Therefore, in this review, we introduce ER stress and mitochondrial quality control, and discuss -
VDAC1 at the Intersection of Cell Metabolism, Apoptosis, and Diseases
biomolecules Review VDAC1 at the Intersection of Cell Metabolism, Apoptosis, and Diseases Varda Shoshan-Barmatz * , Anna Shteinfer-Kuzmine and Ankit Verma Department of Life Sciences and the National Institute for Biotechnology in the Negev, Ben-Gurion University of the Negev, Beer-Sheva 84105, Israel; [email protected] (A.S.-K.); [email protected] (A.V.) * Correspondence: [email protected] Received: 10 September 2020; Accepted: 22 October 2020; Published: 26 October 2020 Abstract: The voltage-dependent anion channel 1 (VDAC1) protein, is an important regulator of mitochondrial function, and serves as a mitochondrial gatekeeper, with responsibility for cellular fate. In addition to control over energy sources and metabolism, the protein also regulates epigenomic elements and apoptosis via mediating the release of apoptotic proteins from the mitochondria. Apoptotic and pathological conditions, as well as certain viruses, induce cell death by inducing VDAC1 overexpression leading to oligomerization, and the formation of a large channel within the VDAC1 homo-oligomer. This then permits the release of pro-apoptotic proteins from the mitochondria and subsequent apoptosis. Mitochondrial DNA can also be released through this channel, which triggers type-I interferon responses. VDAC1 also participates in endoplasmic reticulum (ER)-mitochondria cross-talk, and in the regulation of autophagy, and inflammation. Its location in the outer mitochondrial membrane, makes VDAC1 ideally placed to interact with over 100 proteins, and to orchestrate the interaction of mitochondrial and cellular activities through a number of signaling pathways. Here, we provide insights into the multiple functions of VDAC1 and describe its involvement in several diseases, which demonstrate the potential of this protein as a druggable target in a wide variety of pathologies, including cancer. -
Distinct Expression/Function of Potassium and Chloride Channels Contributes to the Diverse Volume Regulation in Cortical Astrocytes of GFAP/EGFP Mice
Distinct Expression/Function of Potassium and Chloride Channels Contributes to the Diverse Volume Regulation in Cortical Astrocytes of GFAP/EGFP Mice Jana Benesova1,3, Vendula Rusnakova2, Pavel Honsa1,3, Helena Pivonkova1,3, David Dzamba1,3, Mikael Kubista2,4, Miroslava Anderova1* 1 Department of Cellular Neurophysiology, Institute of Experimental Medicine, Academy of Sciences of the Czech Republic, Prague, Czech Republic, 2 Laboratory of Gene Expression, Institute of Biotechnology, Academy of Sciences of the Czech Republic, Prague, Czech Republic, 3 Second Medical Faculty, Charles University, Prague, Czech Republic, 4 TATAA Biocenter, Gothenburg, Sweden Abstract Recently, we have identified two astrocytic subpopulations in the cortex of GFAP-EGFP mice, in which the astrocytes are visualized by the enhanced green–fluorescent protein (EGFP) under the control of the human glial fibrillary acidic protein (GFAP) promotor. These astrocytic subpopulations, termed high response- (HR-) and low response- (LR-) astrocytes, differed in the extent of their swelling during oxygen-glucose deprivation (OGD). In the present study we focused on identifying the ion channels or transporters that might underlie the different capabilities of these two astrocytic subpopulations to regulate their volume during OGD. Using three-dimensional confocal morphometry, which enables quantification of the total astrocytic volume, the effects of selected inhibitors of K+ and Cl2 channels/transporters or glutamate transporters on astrocyte volume changes were determined during 20 minute-OGD in situ. The inhibition of volume regulated anion channels (VRACs) and two-pore domain potassium channels (K2P) highlighted their distinct contributions to volume regulation in HR-/LR-astrocytes. While the inhibition of VRACs or K2P channels revealed their contribution to the swelling of HR-astrocytes, in LR-astrocytes they were both involved in anion/K+ effluxes. -
Loss of Primary Cilia Promotes Mitochondria-Dependent Apoptosis in Thyroid Cancer
www.nature.com/scientificreports OPEN Loss of primary cilia promotes mitochondria‑dependent apoptosis in thyroid cancer Junguee Lee1*, Ki Cheol Park2, Hae Joung Sul1, Hyun Jung Hong3, Kun‑Ho Kim4, Jukka Kero5 & Minho Shong6* The primary cilium is well‑preserved in human diferentiated thyroid cancers such as papillary and follicular carcinoma. Specifc thyroid cancers such as Hürthle cell carcinoma, oncocytic variant of papillary thyroid carcinoma (PTC), and PTC with Hashimoto’s thyroiditis show reduced biogenesis of primary cilia; these cancers are often associated the abnormalities in mitochondrial function. Here, we examined the association between primary cilia and the mitochondria‑dependent apoptosis pathway. Tg-Cre;Ift88fox/fox mice (in which thyroid follicles lacked primary cilia) showed irregularly dilated follicles and increased apoptosis of thyrocytes. Defective ciliogenesis caused by deleting the IFT88 and KIF3A genes from thyroid cancer cell lines increased VDAC1 oligomerization following VDAC1 overexpression, thereby facilitating upregulation of mitochondria‑dependent apoptosis. Furthermore, VDAC1 localized with the basal bodies of primary cilia in thyroid cancer cells. These results demonstrate that loss‑of‑function of primary cilia results in apoptogenic stimuli, which are responsible for mitochondrial‑dependent apoptotic cell death in diferentiated thyroid cancers. Therefore, regulating primary ciliogenesis might be a therapeutic approach to targeting diferentiated thyroid cancers. Te primary cilium is a non-motile, microtubule-based sensory organelle that receives mechanical and chemi- cal stimuli from the environment and transduces external signals into the cell 1. Te tips of primary cilia, which are present in the apical membrane of thyroid follicular cells (thyrocytes), face into the follicular lumen 2. Te primary cilia of murine thyroid follicular cells play a role in maintaining globular follicle structures by acting on cell polarity3. -
The Relevance of Aquaporins for the Physiology, Pathology, and Aging of the Female Reproductive System in Mammals
cells Review The Relevance of Aquaporins for the Physiology, Pathology, and Aging of the Female Reproductive System in Mammals Paweł Kordowitzki 1,2 , Wiesława Kranc 3, Rut Bryl 3, Bartosz Kempisty 3,4,5, Agnieszka Skowronska 6 and Mariusz T. Skowronski 1,* 1 Department of Basic and Preclinical Sciences, Institute for Veterinary Medicine, Nicolaus Copernicus University, 87-100 Torun, Poland; [email protected] 2 Institute of Animal Reproduction and Food Research of Polish Academy of Sciences, 10-243 Olsztyn, Poland 3 Department of Anatomy, Poznan University of Medical Sciences, 60-781 Poznan, Poland; [email protected] (W.K.); [email protected] (R.B.); [email protected] (B.K.) 4 Department of Histology and Embryology, Poznan University of Medical Sciences, 60-781 Poznan, Poland 5 Department of Veterinary Surgery, Institute for Veterinary Medicine, Nicolaus Copernicus University, 87-100 Torun, Poland 6 Department of Human Physiology and Pathophysiology, School of Medicine, Collegium Medicum, University of Warmia and Mazury, Warszawska Street 30, 10-082 Olsztyn, Poland; [email protected] * Correspondence: [email protected]; Tel.: +48-56-611-2231 Received: 27 October 2020; Accepted: 29 November 2020; Published: 1 December 2020 Abstract: Aquaporins constitute a group of water channel proteins located in numerous cell types. These are pore-forming transmembrane proteins, which mediate the specific passage of water molecules through membranes. It is well-known that water homeostasis plays a crucial role in different reproductive processes, e.g., oocyte transport, hormonal secretion, completion of successful fertilization, blastocyst formation, pregnancy, and birth. Further, aquaporins are involved in the process of spermatogenesis, and they have been reported to be involved during the storage of spermatozoa. -
Downloaded Per Proteome Cohort Via the Web- Site Links of Table 1, Also Providing Information on the Deposited Spectral Datasets
www.nature.com/scientificreports OPEN Assessment of a complete and classifed platelet proteome from genome‑wide transcripts of human platelets and megakaryocytes covering platelet functions Jingnan Huang1,2*, Frauke Swieringa1,2,9, Fiorella A. Solari2,9, Isabella Provenzale1, Luigi Grassi3, Ilaria De Simone1, Constance C. F. M. J. Baaten1,4, Rachel Cavill5, Albert Sickmann2,6,7,9, Mattia Frontini3,8,9 & Johan W. M. Heemskerk1,9* Novel platelet and megakaryocyte transcriptome analysis allows prediction of the full or theoretical proteome of a representative human platelet. Here, we integrated the established platelet proteomes from six cohorts of healthy subjects, encompassing 5.2 k proteins, with two novel genome‑wide transcriptomes (57.8 k mRNAs). For 14.8 k protein‑coding transcripts, we assigned the proteins to 21 UniProt‑based classes, based on their preferential intracellular localization and presumed function. This classifed transcriptome‑proteome profle of platelets revealed: (i) Absence of 37.2 k genome‑ wide transcripts. (ii) High quantitative similarity of platelet and megakaryocyte transcriptomes (R = 0.75) for 14.8 k protein‑coding genes, but not for 3.8 k RNA genes or 1.9 k pseudogenes (R = 0.43–0.54), suggesting redistribution of mRNAs upon platelet shedding from megakaryocytes. (iii) Copy numbers of 3.5 k proteins that were restricted in size by the corresponding transcript levels (iv) Near complete coverage of identifed proteins in the relevant transcriptome (log2fpkm > 0.20) except for plasma‑derived secretory proteins, pointing to adhesion and uptake of such proteins. (v) Underrepresentation in the identifed proteome of nuclear‑related, membrane and signaling proteins, as well proteins with low‑level transcripts.