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Viral Gastroenteritis
viral gastroenteritis What causes viral gastroenteritis? y Rotaviruses y Caliciviruses y Astroviruses y SRV (Small Round Viruses) y Toroviruses y Adenoviruses 40 , 41 Diarrhea Causing Agents in World ROTAVIRUS Family Reoviridae Genus Segments Host Vector Orthoreovirus 10 Mammals None Orbivirus 11 Mammals Mosquitoes, flies Rotavirus 11 Mammals None Coltivirus 12 Mammals Ticks Seadornavirus 12 Mammals Ticks Aquareovirus 11 Fish None Idnoreovirus 10 Mammals None Cypovirus 10 Insect None Fijivirus 10 Plant Planthopper Phytoreovirus 12 Plant Leafhopper OiOryzavirus 10 Plan t Plan thopper Mycoreovirus 11 or 12 Fungi None? REOVIRUS y REO: respiratory enteric orphan, y early recognition that the viruses caused respiratory and enteric infections y incorrect belief they were not associated with disease, hence they were considered "orphan " viruses ROTAVIRUS‐ PROPERTIES y Virus is stable in the environment (months) y Relatively resistant to hand washing agents y Susceptible to disinfection with 95% ethanol, ‘Lyy,sol’, formalin STRUCTURAL FEATURES OF ROTAVIRUS y 60‐80nm in size y Non‐enveloped virus y EM appearance of a wheel with radiating spokes y Icosahedral symmetry y Double capsid y Double stranded (ds) RNA in 11 segments Rotavirus structure y The rotavirus genome consists of 11 segments of double- stranded RNA, which code for 6 structural viral proteins, VP1, VP2, VP3, VP4, VP6 and VP7 and 6 non-structural proteins, NSP1-NSP6 , where gene segment 11 encodes both NSP5 and 6. y Genome is encompassed by an inner core consisting of VP2, VP1 and VP3 proteins. Intermediate layer or inner capsid is made of VP6 determining group and subgroup specifici ti es. y The outer capsid layer is composed of two proteins, VP7 and VP4 eliciting neutralizing antibody responses. -
Novel Reovirus Associated with Epidemic Mortality in Wild Largemouth Bass
Journal of General Virology (2016), 97, 2482–2487 DOI 10.1099/jgv.0.000568 Short Novel reovirus associated with epidemic mortality Communication in wild largemouth bass (Micropterus salmoides) Samuel D. Sibley,1† Megan A. Finley,2† Bridget B. Baker,2 Corey Puzach,3 Aníbal G. Armien, 4 David Giehtbrock2 and Tony L. Goldberg1,5 Correspondence 1Department of Pathobiological Sciences, University of Wisconsin–Madison, Madison, WI, USA Tony L. Goldberg 2Wisconsin Department of Natural Resources, Bureau of Fisheries Management, Madison, WI, [email protected] USA 3United States Fish and Wildlife Service, La Crosse Fish Health Center, Onalaska, WI, USA 4Minnesota Veterinary Diagnostic Laboratory, College of Veterinary Medicine, University of Minnesota, St. Paul, MN, USA 5Global Health Institute, University of Wisconsin–Madison, Madison, Wisconsin, USA Reoviruses (family Reoviridae) infect vertebrate and invertebrate hosts with clinical effects ranging from inapparent to lethal. Here, we describe the discovery and characterization of Largemouth bass reovirus (LMBRV), found during investigation of a mortality event in wild largemouth bass (Micropterus salmoides) in 2015 in WI, USA. LMBRV has spherical virions of approximately 80 nm diameter containing 10 segments of linear dsRNA, aligning it with members of the genus Orthoreovirus, which infect mammals and birds, rather than members of the genus Aquareovirus, which contain 11 segments and infect teleost fishes. LMBRV is only between 24 % and 68 % similar at the amino acid level to its closest relative, Piscine reovirus (PRV), the putative cause of heart and skeletal muscle inflammation of farmed salmon. LMBRV expands the Received 11 May 2016 known diversity and host range of its lineage, which suggests that an undiscovered diversity of Accepted 1 August 2016 related pathogenic reoviruses may exist in wild fishes. -
Aquatic Animal Viruses Mediated Immune Evasion in Their Host T ∗ Fei Ke, Qi-Ya Zhang
Fish and Shellfish Immunology 86 (2019) 1096–1105 Contents lists available at ScienceDirect Fish and Shellfish Immunology journal homepage: www.elsevier.com/locate/fsi Aquatic animal viruses mediated immune evasion in their host T ∗ Fei Ke, Qi-Ya Zhang State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, China ARTICLE INFO ABSTRACT Keywords: Viruses are important and lethal pathogens that hamper aquatic animals. The result of the battle between host Aquatic animal virus and virus would determine the occurrence of diseases. The host will fight against virus infection with various Immune evasion responses such as innate immunity, adaptive immunity, apoptosis, and so on. On the other hand, the virus also Virus-host interactions develops numerous strategies such as immune evasion to antagonize host antiviral responses. Here, We review Virus targeted molecular and pathway the research advances on virus mediated immune evasions to host responses containing interferon response, NF- Host responses κB signaling, apoptosis, and adaptive response, which are executed by viral genes, proteins, and miRNAs from different aquatic animal viruses including Alloherpesviridae, Iridoviridae, Nimaviridae, Birnaviridae, Reoviridae, and Rhabdoviridae. Thus, it will facilitate the understanding of aquatic animal virus mediated immune evasion and potentially benefit the development of novel antiviral applications. 1. Introduction Various antiviral responses have been revealed [19–22]. How they are overcome by different viruses? Here, we select twenty three strains Aquatic viruses have been an essential part of the biosphere, and of aquatic animal viruses which represent great harms to aquatic ani- also a part of human and aquatic animal lives. -
Molecular Studies of Piscine Orthoreovirus Proteins
Piscine orthoreovirus Series of dissertations at the Norwegian University of Life Sciences Thesis number 79 Viruses, not lions, tigers or bears, sit masterfully above us on the food chain of life, occupying a role as alpha predators who prey on everything and are preyed upon by nothing Claus Wilke and Sara Sawyer, 2016 1.1. Background............................................................................................................................................... 1 1.2. Piscine orthoreovirus................................................................................................................................ 2 1.3. Replication of orthoreoviruses................................................................................................................ 10 1.4. Orthoreoviruses and effects on host cells ............................................................................................... 18 1.5. PRV distribution and disease associations ............................................................................................. 24 1.6. Vaccine against HSMI ............................................................................................................................ 29 4.1. The non ......................................................37 4.2. PRV causes an acute infection in blood cells ..........................................................................................40 4.3. DNA -
Characterization of Piscine Orthoreovirus (PRV) and Associated Diseases to Inform Pathogen Transfer Risk Assessments in British Columbia
Canadian Science Advisory Secretariat (CSAS) Research Document 2019/035 National Capital Region and Pacific Region Characterization of piscine orthoreovirus (PRV) and associated diseases to inform pathogen transfer risk assessments in British Columbia Mark Polinski and Kyle Garver Fisheries and Oceans Canada Pacific Biological Station 3190 Hammond Bay Road Nanaimo, British Columbia, V9T 6N7 June 2019 Foreword This series documents the scientific basis for the evaluation of aquatic resources and ecosystems in Canada. As such, it addresses the issues of the day in the time frames required and the documents it contains are not intended as definitive statements on the subjects addressed but rather as progress reports on ongoing investigations. Published by: Fisheries and Oceans Canada Canadian Science Advisory Secretariat 200 Kent Street Ottawa ON K1A 0E6 http://www.dfo-mpo.gc.ca/csas-sccs/ [email protected] © Her Majesty the Queen in Right of Canada, 2019 ISSN 1919-5044 Correct citation for this publication: Polinski, M. and Garver, K. 2019. Characterization of piscine orthoreovirus (PRV) and associated diseases to inform pathogen transfer risk assessments in British Columbia. DFO Can. Sci. Advis. Sec. Res. Doc. 2019/035. v + 35 p. Aussi disponible en français : Polinski, M. et Garver, K. 2019. Caractérisation de l’orthoréovirus pisciaire (RVP) et des maladies associées pour guider les évaluations des risques de transfert d’agents pathogènes en Colombie-Britannique. Secr. can. de consult. sci. du MPO, Doc. de rech. 2019/035. v + 40 -
Piscine Orthoreovirus: Distribution, Characterization and Experimental Infections in Salmonids
Downloaded from orbit.dtu.dk on: Oct 04, 2021 Piscine orthoreovirus: Distribution, characterization and experimental infections in salmonids Vendramin, Niccolò Publication date: 2019 Document Version Publisher's PDF, also known as Version of record Link back to DTU Orbit Citation (APA): Vendramin, N. (2019). Piscine orthoreovirus: Distribution, characterization and experimental infections in salmonids. Technical University of Denmark, National Institute for Aquatic Resources. General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. Users may download and print one copy of any publication from the public portal for the purpose of private study or research. You may not further distribute the material or use it for any profit-making activity or commercial gain You may freely distribute the URL identifying the publication in the public portal If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. DTU Aqua National Institute of Aquatic Resources Piscine orthoreovirus Distribution, characterization and experimental infections in salmonids By Niccolò Vendramin PhD Thesis Piscine orthoreovirus. Distribution, characterization and experimental infections in salmonids Philosophiae Doctor (PhD) Thesis Niccolò Vendramin Unit for Fish and Shellfish diseases National Institute for Aquatic Resources DTU-Technical University of Denmark Kgs. Lyngby 2018 2 Niccoló Vendramin‐Ph.D. Thesis Piscine orthoreovirus. Distribution, characterization and experimental infections in salmonids You can't always get what you want But if you try sometime you might find You get what you need 1969 The Rolling Stones Niccoló Vendramin‐Ph.D. -
Isolation of a Novel Fusogenic Orthoreovirus from Eucampsipoda Africana Bat Flies in South Africa
viruses Article Isolation of a Novel Fusogenic Orthoreovirus from Eucampsipoda africana Bat Flies in South Africa Petrus Jansen van Vuren 1,2, Michael Wiley 3, Gustavo Palacios 3, Nadia Storm 1,2, Stewart McCulloch 2, Wanda Markotter 2, Monica Birkhead 1, Alan Kemp 1 and Janusz T. Paweska 1,2,4,* 1 Centre for Emerging and Zoonotic Diseases, National Institute for Communicable Diseases, National Health Laboratory Service, Sandringham 2131, South Africa; [email protected] (P.J.v.V.); [email protected] (N.S.); [email protected] (M.B.); [email protected] (A.K.) 2 Department of Microbiology and Plant Pathology, Faculty of Natural and Agricultural Science, University of Pretoria, Pretoria 0028, South Africa; [email protected] (S.M.); [email protected] (W.K.) 3 Center for Genomic Science, United States Army Medical Research Institute of Infectious Diseases, Frederick, MD 21702, USA; [email protected] (M.W.); [email protected] (G.P.) 4 Faculty of Health Sciences, University of the Witwatersrand, Johannesburg 2193, South Africa * Correspondence: [email protected]; Tel.: +27-11-3866382 Academic Editor: Andrew Mehle Received: 27 November 2015; Accepted: 23 February 2016; Published: 29 February 2016 Abstract: We report on the isolation of a novel fusogenic orthoreovirus from bat flies (Eucampsipoda africana) associated with Egyptian fruit bats (Rousettus aegyptiacus) collected in South Africa. Complete sequences of the ten dsRNA genome segments of the virus, tentatively named Mahlapitsi virus (MAHLV), were determined. Phylogenetic analysis places this virus into a distinct clade with Baboon orthoreovirus, Bush viper reovirus and the bat-associated Broome virus. -
Arenaviridae Astroviridae Filoviridae Flaviviridae Hantaviridae
Hantaviridae 0.7 Filoviridae 0.6 Picornaviridae 0.3 Wenling red spikefish hantavirus Rhinovirus C Ahab virus * Possum enterovirus * Aronnax virus * * Wenling minipizza batfish hantavirus Wenling filefish filovirus Norway rat hunnivirus * Wenling yellow goosefish hantavirus Starbuck virus * * Porcine teschovirus European mole nova virus Human Marburg marburgvirus Mosavirus Asturias virus * * * Tortoise picornavirus Egyptian fruit bat Marburg marburgvirus Banded bullfrog picornavirus * Spanish mole uluguru virus Human Sudan ebolavirus * Black spectacled toad picornavirus * Kilimanjaro virus * * * Crab-eating macaque reston ebolavirus Equine rhinitis A virus Imjin virus * Foot and mouth disease virus Dode virus * Angolan free-tailed bat bombali ebolavirus * * Human cosavirus E Seoul orthohantavirus Little free-tailed bat bombali ebolavirus * African bat icavirus A Tigray hantavirus Human Zaire ebolavirus * Saffold virus * Human choclo virus *Little collared fruit bat ebolavirus Peleg virus * Eastern red scorpionfish picornavirus * Reed vole hantavirus Human bundibugyo ebolavirus * * Isla vista hantavirus * Seal picornavirus Human Tai forest ebolavirus Chicken orivirus Paramyxoviridae 0.4 * Duck picornavirus Hepadnaviridae 0.4 Bildad virus Ned virus Tiger rockfish hepatitis B virus Western African lungfish picornavirus * Pacific spadenose shark paramyxovirus * European eel hepatitis B virus Bluegill picornavirus Nemo virus * Carp picornavirus * African cichlid hepatitis B virus Triplecross lizardfish paramyxovirus * * Fathead minnow picornavirus -
Conventional and Unconventional Mechanisms for Capping Viral Mrna
REVIEWS Conventional and unconventional mechanisms for capping viral mRNA Etienne Decroly1, François Ferron1, Julien Lescar1,2 and Bruno Canard1 Abstract | In the eukaryotic cell, capping of mRNA 5′ ends is an essential structural modification that allows efficient mRNA translation, directs pre-mRNA splicing and mRNA export from the nucleus, limits mRNA degradation by cellular 5′–3′ exonucleases and allows recognition of foreign RNAs (including viral transcripts) as ‘non-self’. However, viruses have evolved mechanisms to protect their RNA 5′ ends with either a covalently attached peptide or a cap moiety (7‑methyl-Gppp, in which p is a phosphate group) that is indistinguishable from cellular mRNA cap structures. Viral RNA caps can be stolen from cellular mRNAs or synthesized using either a host- or virus-encoded capping apparatus, and these capping assemblies exhibit a wide diversity in organization, structure and mechanism. Here, we review the strategies used by viruses of eukaryotic cells to produce functional mRNA 5′-caps and escape innate immunity. Pre-mRNA splicing The cap structure found at the 5′ end of eukaryotic reactions involved in the viral RNA-capping process, A post-transcriptional mRNAs consists of a 7‑methylguanosine (m7G) moi‑ and the specific cellular factors that trigger a response modification of pre-mRNA, in ety linked to the first nucleotide of the transcript via a from the innate immune system. which introns are excised and 5′–5′ triphosphate bridge1 (FIG. 1a). The cap has several exons are joined in order to form a translationally important biological roles, such as protecting mRNA Capping, decapping and turnover of host RNA functional, mature mRNA. -
The Non-Structural Protein Μns of Piscine Orthoreovirus
Haatveit et al. Vet Res (2016) 47:5 DOI 10.1186/s13567-015-0302-0 Veterinary Research RESEARCH ARTICLE Open Access The non‑structural protein μNS of piscine orthoreovirus (PRV) forms viral factory‑like structures Hanne Merethe Haatveit1 , Ingvild B. Nyman1, Turhan Markussen1,2, Øystein Wessel1, Maria Krudtaa Dahle3 and Espen Rimstad1* Abstract Piscine orthoreovirus (PRV) is associated with heart- and skeletal muscle inflammation in farmed Atlantic salmon. The virus is ubiquitous and found in both farmed and wild salmonid fish. It belongs to the family Reoviridae, closely related to the genus Orthoreovirus. The PRV genome comprises ten double-stranded RNA segments encoding at least eight structural and two non-structural proteins. Erythrocytes are the major target cells for PRV. Infected erythrocytes contain globular inclusions resembling viral factories; the putative site of viral replication. For the mammalian reovirus (MRV), the non-structural protein μNS is the primary organizer in factory formation. The analogous PRV protein was the focus of the present study. The subcellular location of PRV μNS and its co-localization with the PRV σNS, µ2 and λ1 proteins was investigated. We demonstrated that PRV μNS forms dense globular cytoplasmic inclusions in transfected fish cells, resembling the viral factories of MRV. In co-transfection experiments with μNS, the σNS, μ2 and λ1 proteins were recruited to the globular structures. The ability of μNS to recruit other PRV proteins into globular inclusions indi- cates that it is the main viral protein involved in viral factory formation and pivotal in early steps of viral assembly. Introduction wild salmon, but no lesions consistent with HSMI have Piscine orthoreovirus (PRV) is a member of the family been discovered in the wild population [6]. -
Emerging Viruses in British Columbia Salmon Discovered Via a Viral Immune Response Biomarker Panel and Metatranscriptomic Sequencing
bioRxiv preprint doi: https://doi.org/10.1101/2020.02.13.948026; this version posted February 13, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Emerging viruses in British Columbia salmon discovered via a viral immune response biomarker panel and metatranscriptomic sequencing 5 Gideon J. Mordecai*,1 Emiliano Di Cicco*,2,3, Oliver P. Günther4, Angela D. Schulze2, Karia H. Kaukinen2, Shaorong Li2, Amy Tabata2, Tobi J. Ming2, Hugh W. Ferguson5, Curtis A. Suttle6,7,8,9, Kristina M. Miller2 *These authors contributed equally to this work 10 1. Department of Medicine, University of British Columbia, Vancouver, Canada 2. Pacific Biological Station, Fisheries and Oceans Canada, Nanaimo, Canada 3. Pacific Salmon Foundation, Vancouver, Canada 4. Günther Analytics, Vancouver, Canada 5. School of Veterinary Medicine, St. George’s University, True Blue, Grenada 15 6. Department of Botany, University of British Columbia, Vancouver, Canada 7. Institute for the Oceans and Fisheries. University of British Columbia, Vancouver, Canada 8. Department of Earth, Ocean and Atmospheric Sciences, University of British Columbia, Vancouver, Canada 9. Department of Microbiology and Immunology, University of British Columbia, Vancouver, 20 Canada Abstract The emergence of infectious agents poses a continual economic and environmental challenge to aquaculture production, yet the diversity, abundance and epidemiology of aquatic viruses are poorly 25 characterised. In this study, we applied salmon host transcriptional biomarkers to identify and select fish in a viral disease state but only those that we also showed to be negative for established viruses. -
I CHARACTERIZATION of ORTHOREOVIRUSES ISOLATED from AMERICAN CROW (CORVUS BRACHYRHYNCHOS) WINTER MORTALITY EVENTS in EASTERN CA
CHARACTERIZATION OF ORTHOREOVIRUSES ISOLATED FROM AMERICAN CROW (CORVUS BRACHYRHYNCHOS) WINTER MORTALITY EVENTS IN EASTERN CANADA A Thesis Submitted to the Graduate Faculty in Partial Fulfillment of the Requirements for the Degree of DOCTOR OF PHILOSOPHY In the Department of Pathology and Microbiology Faculty of Veterinary Medicine University of Prince Edward Island Anil Wasantha Kalupahana Charlottetown, P.E.I. July 12, 2017 ©2017, A.W. Kalupahana i THESIS/DISSERTATION NON-EXCLUSIVE LICENSE Family Name: Kalupahana Given Name, Middle Name (if applicable): Anil Wasantha Full Name of University: Atlantic Veterinary Collage at the University of Prince Edward Island Faculty, Department, School: Department of Pathology and Microbiology Degree for which thesis/dissertation was Date Degree Awarded: July 12, 2017 presented: PhD DOCTORThesis/dissertation OF PHILOSOPHY Title: Characterization of orthoreoviruses isolated from American crow (Corvus brachyrhynchos) winter mortality events in eastern Canada Date of Birth. December 25, 1966 In consideration of my University making my thesis/dissertation available to interested persons, I, Anil Wasantha Kalupahana, hereby grant a non-exclusive, for the full term of copyright protection, license to my University, the Atlantic Veterinary Collage at the University of Prince Edward Island: (a) to archive, preserve, produce, reproduce, publish, communicate, convert into any format, and to make available in print or online by telecommunication to the public for non-commercial purposes; (b) to sub-license to Library and Archives Canada any of the acts mentioned in paragraph (a). I undertake to submit my thesis/dissertation, through my University, to Library and Archives Canada. Any abstract submitted with the thesis/dissertation will be considered to form part of the thesis/dissertation.