Alteration of Hexosaminidaseisozymesin

Total Page:16

File Type:pdf, Size:1020Kb

Alteration of Hexosaminidaseisozymesin ICANCER RESEARCH 39, i 829-i 834, May 1979] 0008-5472/79/0039-0000502.00 Alterationof HexosaminidaseIsozymesin HumanRenalCarcinoma' Toshikazu Okochi,2 Hiromasa Seike, Kazuya Higashino, Toshikazu Hada, Shinichiro Watanabe, Yuichi Yamamura, Fumlo Ito, Minoru Matsuda, Masao Osafune, Toshihiko Kotake, and Takao Sonoda TheThirdDepartmentofInternalMedicine(T.0., H. S., K. H., T.H., S. W.,V. V.)andDepartmentofUrology(M.M., M. 0., T.K.. T.S.],OsakaUniversityMedical School, Fukushima-ku, Osaka 553, and Health Administration Center (T. 0. , F. I.], Osaka University, Toyonaka, Osaka 560. Japan ABSTRACT been well studied to our knowledge. Consequently, the present study was undertaken in order to compare the isozyme patterns The activity and isozyme patterns of hexosaminidase in of hexosaminidase and the enzymatic properties of human human renal carcinoma were studied in comparison with those renal carcinoma with those of normal kidney. of normal kidney. Hexosaminidase in extracts from normal kidney and renal carcinoma tissue could be separated into two MATERIALSAND METHODS major forms [hexosaminidase A (Hex A) and hexosaminidase B (Hex B)] by Ceilogel electrophoresis or by diethylaminoethyl Materials. The renal carcinoma tissues obtained at operation cellulose column chromatography. All of i 0 renal carcinoma from the Department of Urology, Osaka University Hospital, tissues showed a low activity ratio of Hex A to Hex B, as were frozen immediately after removal. Normal human kidneys compared with the ratio in normal kidney; the ratio in renal were postmortem specimens obtained within 8 hr after death carcinoma tissue was between O.6i and 2.2i (mean, 1.30), at the Department of Forensic Pathology, Osaka University while that in normal kidney was between 2.50 and 4.52 (mean, Medical School. Placentas at the time of delivery were used. 3.46). Hexosaminidase activity and the ratio of Hex A to Hex B Cultured renal carcinoma cells were established from a fresh in renal carcinoma tissue were independent of the cell type and renal carcinoma tissue as described by Matsuda et a!. (i 4). the differentiation grade of carcinoma tissue. Hex A and Hex B Cultured cells were morphoiogically similar to cells of the of renal carcinoma tissue differed from each other in physico original carcinoma tissue. The cells cultured serially for about chemical properties such as pH dependence of enzyme activ 240 days were used for the studies presented here. Tissues ity, thermostability, and Km'Sfor two synthetic substrates, but and cells were stored frozen at —70°untilused. The cancerous each isozyme maintained its same physicochemicai properties tissue was carefully separated from normal renal tissue and whether from normal or from carcinoma tissue. The isozyme connective tissue. The tissues were minced and homogenized patterns of cultured renal carcinoma cells and placenta were in 5 volumes of ice-cold 25 m@sodium phosphate buffer (pH similar to those of the carcinoma tissue. The results presented 6.0) containing 0.i % Triton X-i 00, using a Potter-Eivehjem here indicate that hexosaminidase isozymes in renal carcinoma homogenizer. After centrifugation at i 5,000 x g for 40 mm at tissue express at least oncoplacental patterns. 40, the supernatants were used as the source of enzyme. Chemicals. p-Nitrophenyl-N-acetyl-$-D-glucosaminide,p-ni INTRODUCTION trophenyl-N-acetyl-/3-D-galactosaminide, and 4-methyiumbelii feryi-N-acetyi-$-D-glucosaminide were purchased from Sigma Human hexosaminidase (2-acetamido-2-deoxy-f3-D-gluco Chemical Co., St. Louis, Mo. Ceilogel was purchased from side acetamidodeoxy-giucohydrolase, EC 3.2. i .30) was Chemetron Co., Milan, Italy, and DEAE-celiuiose was from shown by Robinson and Stirling (20) to exist in 2 major forms, Brown Co., Berlin, N. H. Other chemicals were obtained from acidic (Hex A3) and basic (Hex B). Hexosaminidase isozymes Wako Pure Chemical industries, Osaka, Japan. have been studied in normal human brain, placenta, and kidney EnzymeAssay.Hexosaminidaseactivitywasmeasuredus tissues. Their possible clinical significance was first suggested ing the method of Brattain et a!. (2) with a slight modification. by the work of Okada and O'Brien (i 5). They were able to The substrate solution was prepared by dissolving p-nitro show that Hex A activity was deficient in the classical form of phenyl-N-acetyl-f1-D-glucosaminide in 0.i M citric acid-O.2 M Tay-Sachs disease. Abnormalities in hexosaminidase isozymes sodium phosphate buffer, pH 4.5. The incubation mixture, in a have also been demonstrated in tumor tissues. Weber et a!. total volume of i .0 ml, contained 0.9 ml of substrate solution (25) reported that hexosaminidase isozyme patterns of fast and 0.1 ml of enzyme solution of an appropriate activity. The growing hepatoma in rat were similar to those of brain or fetal final substrate concentration was 4 mM.After incubation at 37° liver. More recently, Brattain et a!. (2) reported that hexosamin for 30 mm, the reaction was terminated by the addition of 2.0 idase isozymes in normal human colon mucosa showed a ml of 0.4 M glycine-NaOH buffer, pH i 0.5. The extinctions of preponderance of Hex A over Hex B, whereas colon carcinoma the developed yellow color were determined at 4i 0 nm. Care tissue contained a higher proportion of Hex B. However, hex was taken that the reaction obeyed zero-order kinetics under osaminidase isozymes of human renal carcinoma have not the assay conditions. One unit of enzyme activity was defined as the amount of enzyme which releases i @zgofp-nitrophenol ,AcompendiumofthisworkwaspresentedattheSixthMeeting,Internationalfrom the substrate per mm at 37°. Research Group for Carcino-Embryonic Proteins, September 17 to 2i , i 978, Protein Assay. Proteinconcentrationwas determinedby the Marburg, West Germany (16). This work was supported in part by a Grant-in-Aid for Cancer Research from the Ministry of Education, Science and Culture, Japan. method of Lowry et a!. (12) using bovine serum albumin as a 2 To whom requests for reprints should be addressed. standard. 3 The abbreviations used are: Hex A, hexosaminidase A; Hex B, hexosamini dase B. CellogelElectrophoresis.Electrophoresiswasperformed Received September 7, 1978; accepted February 9, 1979. on Cellogel (5 x i 8 cm) according to the procedure of Fluharty MAY 1979 i 829 Downloaded from cancerres.aacrjournals.org on September 28, 2021. © 1979 American Association for Cancer Research. T. Okochi et a!. et a!. (5). Electrophoresis was run at a constant current of 1.2 20 ma/cm for 2.5 hr at 4°using 40 mM sodium phosphate (pH A 6.5) as an electrode buffer which usually resulted in a voltage of 220 V. After completion of electrophoresis, the Ceilogel was ‘5 sandwiched between Whatman No. 3MM paper strips which had been soaked with the staining solution, supported on a glass plate, and wrapped in a plastic film. The staining solution E @0 contained 0.5 mM 4-methylumbeliiferyl-N-acetyl-$-D-giucosa ‘I) minide in O.i M citric acid-0.2 M phosphate buffer, pH 4.5. C :@ O2M NaCl After i 0 to 30 mm incubation at 37°,strips of Whatman in buffer paper soaked with 0.4 PAglycine-NaOH buffer (pH 10.5) were >. substituted for strips of the substrate paper. The alkaline so > iution stops the enzyme reaction and produces strongly flu 0 0-0 orescent 4-methylumbeiliferone. Fluorescent bands were vis w -@10 C,) 20 m ualized with a Toshiba Black Lamp (FL-2OBLB), and photo ci z graphs were taken immediately, before the fluorescence dif z B B fused. Co Cl) ‘5 DEAE-cellulose Column Chromatography. One ml of the 0 3 supernatant from tissues or cells was loaded onto a DEAE w I cellulose column (6.5 x 2 cm) previously equilibrated with 25 C0 l0 mM sodium phosphate buffer, pH 6.0. Two major peaks of hexosaminidase activity were obtained by stepwise elution with the equilibrating buffer and 0.2 M NaCi in the same buffer. 5 0.2 M NaCI in buffer RESULTS 0 5 C0 20 2' Eiectrophoretlc Patterns of Hexosaminidase isozymes on Cellogel. Hexosaminidase isozymes from normal kidney, renal FRACTION NUMBER Chart i . Representative elution profiles of hexosaminidase from a DEAE carcinoma, placenta, and cultured renal carcinoma cells were cellulose column. A, normal adult kidney (Table i , Normal Kidney 4); B, renal separated using Ceilogel electrophoresis. Two major isozymes, carcinoma tissue (Table i , Renal Carcinoma 1). Column size, 6.5 x 2 cm; fraction a fast-moving band (Hex A) and a slow-moving band (Hex B), volume, 5 ml. 0, enzyme activity; 5, protein. were obtained by this method. Isozyme patterns of normal kidney showed an apparent preponderance of Hex A activity x-i 00, and the clarified supernatants were tested for hexosa as compared with Hex B. However, those of renal carcinoma minidase activity. Approximately 90% of the enzyme activity tissue showed a lesser preponderance of Hex A, or a prepon present in tissue homogenates was found in the clarified su derance of Hex B over Hex A. Similarly, a relative increase of pernatants. In 7 normal kidneys, the specific enzyme activity of Hex B was observed in placenta and cultured renal carcinoma the supernatants ranged from 9.5 to i 2.3 units/mg protein cells (Fig. i ). In order to obtain Hex A and Hex B activities (mean ±S.D., i i .0 ±i .0), with a ratio of Hex A to Hex B precisely, chromatographic analysis was carried out. between 2.50 and 4.52 (3.46 ±0.69). The enzyme activity Chromatographic Patterns of Hexosaminidase Isozymes and the ratio of Hex A to Hex B in normal kidney were not on DEAE-celiulose. Hexosaminidaseisozymescould also be related to sex or age as shown in Table 1.
Recommended publications
  • Biochemical Characterization of Three Aspergillus Niger Β-Galactosidases
    Electronic Journal of Biotechnology 27 (2017) 37–43 Contents lists available at ScienceDirect Electronic Journal of Biotechnology Research article Biochemical characterization of three Aspergillus niger β-galactosidases Dandan Niu a,b,⁎, Xiaojing Tian b, Nokuthula Peace Mchunu c,ChaoJiab, Suren Singh c, Xiaoguang Liu d, Bernard A. Prior e, Fuping Lu b a Fujian Provincial Key Laboratory of Marine Enzyme Engineering, College of Biological Science and Engineering, Fuzhou University, Fuzhou 350116, China b College of Biotechnology, Tianjin University of Science and Technology, Tianjin 300457, China c Department of Biotechnology and Food Technology, Faculty of Applied Sciences, Durban University of Technology, Durban, South Africa d Department of Biological Chemical Engineering, College of Chemical Engineering and Material Sciences, Tianjin University of Science and Technology, Tianjin 300457, China e Department of Microbiology, Stellenbosch University, Matieland, South Africa article info abstract Article history: Background: β-Galactosidases catalyze both hydrolytic and transgalactosylation reactions and therefore have Received 30 October 2016 many applications in food, medical, and biotechnological fields. Aspergillus niger has been a main source of Accepted 3 March 2017 β-galactosidase, but the properties of this enzyme are incompletely studied. Available online 10 March 2017 Results: Three new β-galactosidases belonging to glycosyl hydrolase family 35 from A. niger F0215 were cloned, expressed, and biochemically characterized. In addition to the known activity of LacA encoded by lacA, three Keywords: putative β-galactosidases, designated as LacB, LacC, and LacE encoded by the genes lacB, lacC,andlacE, Biochemical properties Food biotechnology respectively, were successfully cloned, sequenced, and expressed and secreted by Pichia pastoris. These three Fungal β-galactosidases proteins and LacA have N-terminal signal sequences and are therefore predicted to be extracellular enzymes.
    [Show full text]
  • Comparative Characterization of Arabidopsis Subfamily III Β-Galactosidases
    Comparative characterization of Arabidopsis Subfamily III β-galactosidases Dashzeveg Gantulga Dissertation submitted to the Faculty of the Virginia Polytechnic Institute and State University in partial fulfillment of the requirement for the degree of Doctor of Philosophy In Biological Sciences Dr. Brenda S.J. Winkel Committee Chair Dr. David R. Bevan Committee member Dr. Richard A. Walker Committee member Dr. Zhaomin Yang Committee member December 5, 2008 Blacksburg, Virginia Keywords: Arabidopsis, β-galactosidase, cell wall Comparative characterization of Arabidopsis Subfamily III β-galactosidases Dashzeveg Gantulga Abstract The Arabidopsis genome encodes 17 putative β−galactosidases belonging to Glycosyl Hydrolase (GH) family 35, which have been classified into seven subfamilies based on sequence homology. The largest of these, Subfamily III, consists of six genes, Gal-1 (At3g13750), Gal-2 (At3g52840), Gal-3 (At4g36360), Gal-4 (At5g56870), Gal-5 (At1g45130), and Gal-12 (At4g26140) that share 60-81% sequence identity at the amino acid level. All six proteins have a signal peptide that may target them to the cell exterior. We report purification and biochemical characterization of all six members of Subfamily III, each expressed as a recombinant protein in Pichia pastoris and one also in native form, purified from Arabidopsis leaves, with a special emphasis on substrate specificities. Organ specific expression of the six Gal genes was examined by analysis of the microarray databases and by semi-quantitative RT-PCR. The relative abundance and size of the Gal-1, Gal-2, Gal-5, and Gal-12 proteins was studied by immunoblotting using isoform-specific anti-peptide antibodies. The protein expression patterns of the Gal genes were generally consistent with microarray and RT-PCR data, though some discrepancies were observed suggesting distinct mechanisms of regulation for transcription and translation.
    [Show full text]
  • MICROBIAL BETA-GALACTOSIDASE: a SURVEY for NEUTRAL Ph OPTIMUM ENZYMES
    ]. Milk Food Technol, Vol. 37, No. 4 (1974) 199 MICROBIAL BETA-GALACTOSIDASE: A SURVEY FOR NEUTRAL pH OPTIMUM ENZYMES L. C. BLANKENsHIP1 AND P. A. WELLS Dairy Foods Nutrition Laboratory, Nutrition Institute Agricultural Research Center, ARS, U. S. Departmant of Agriculture Beltsville, Maryland 20705 (Received for publication November 19, 1973) ABSTRACT MATERIALS AND METHODS Downloaded from http://meridian.allenpress.com/jfp/article-pdf/37/4/199/2399667/0022-2747-37_4_199.pdf by guest on 02 October 2021 Pure cultures of yeast, molds, and bacteria were screened Cultures and media for neutral pH optimum .B-galactosidases ( lactases) that would One hundred twenty-five ·identified yeasts, molds, and bac­ be suitable in dairy l;lroducts applications. Only 2 of 125 teria were obtained from the culture collection of the North­ identified and 10 of 250 unidentified cultures warranted fur­ em Regional Research Center, Peoria, Illinois. Cultures of ther study. These cultures produced high levels of· .a-galacto­ the following genera were included: Penicillium, Aspergillus, sidase with moderate galactose product inhibition. Character­ Absidia, Cunninghamella, Mucor, Rhizopus, CircineUa, Blake­ ization of the partially purified enzymes from unidentified cul­ slea, Chlamydamucor, Streptomyces, Actinomyces, Actinopyc­ hwes revealed that all required either Na+, K+ or Mg++ nidium, Debaryomyces, Kluyveromyces, Pichia, Schwanniomy­ c::ation activation, were inhibited by Cu + +, Mn + +, and ces, Bullera, Brettanomyces, Candida, Cryptococcus, Rhoda­ Fe+ + +, were most active around pH 6.8, and were unstable torula, Torulopsis, Escherichia, and Bacillus. Additionally, during storage (at either - 196 C or 4 C} . except in the 250 unidentified organisms were isolated by enrichment cul­ presence of 0.5 M ammonium sulfate.
    [Show full text]
  • Insight Into the Ecology of Vaginal Bacteria Through Integrative Analyses of Metagenomic and Metatranscriptomic Data
    bioRxiv preprint doi: https://doi.org/10.1101/2021.06.17.448822; this version posted June 17, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Insight into the ecology of vaginal bacteria through integrative analyses of metagenomic and metatranscriptomic data M. T. France1, L. Fu1, L. Rutt1, H. Yang1, M. Humphrys1, S. Narina1, P. Gajer1, B. Ma1, L. J. Forney2, J. Ravel1* 1Institute for Genome Sciences and Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD USA. 2Institute for Bioinformatics and Evolutionary Studies and Department of Biology, University of Idaho, Moscow, ID USA *Corresponding author, address correspondence to [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.06.17.448822; this version posted June 17, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Abstract Vaginal bacterial communities dominated by Lactobacillus species are associated with a reduced risk to various adverse health outcomes. However, somewhat unexpectedly many healthy women have microbiota that are not dominated by lactobacilli. To determine the factors that drive vaginal community composition we characterized the genetic composition and transcriptional activities of vaginal microbiota in healthy women. We demonstrated that the abundance of a species is not always indicative of its transcriptional activity and that impending changes in community composition can be predicted from metatranscriptomic data.
    [Show full text]
  • Pitfalls in the Use of Artificial Substrates for the Diagnosis of Gaucher's Disease
    J Clin Pathol: first published as 10.1136/jcp.31.11.1091 on 1 November 1978. Downloaded from Journal of Clinical Pathology, 1978, 31, 1091-1093 Pitfalls in the use of artificial substrates for the diagnosis of Gaucher's disease YOAV BEN-YOSEPH AND HENRY L. NADLER From the Department of Pediatrics, Northwestern University Medical School, Division of Genetics, Children's Memorial Hospital, Chicago, Ill, USA SUMMARY A patient with Gaucher's disease is described, in whom the disease could not be diagnosed enzymically in liver and leucocytes using artificial substrate 4-methylumbelliferyl P-glucoside. Normal activity was found in the liver, and about 600% of control activity was determined in the patient's leucocytes. In contrast, when [I4C]-N-stearoyl glucocerebroside was employed as a sub- strate, activity as low as 50% of control has been found in all the proband's tissues, and carrier levels were determined in the proband's parents and maternal uncle. Gaucher's disease is an autosomal recessive disorder In the present report a case of Gaucher's disease of glucolipid metabolism characterised clinically by is described in which 4-methylumbelliferyl fl- hepatosplenomegaly, anaemia, and thrombocyto- glucosidase activity in leucocytes and liver was penia (Brady, 1978). It is probably the most com- normal, while deficient glucocerebroside activity monly recognised disorder of sphingolipid meta- using [14C]-N-stearoyl glucocerebroside was docu- copyright. bolism. Accumulation of glucosylceramide (gluco- mented. The purpose of this report is to call to the cerebroside) is found in reticuloendothelial cells of attention of clinicians and pathologists the potential these patients, particularly in cells of the spleen, bone unreliability of artificial substrates to establish the marrow, and liver (Brady, 1978).
    [Show full text]
  • Plant and Microbial Xyloglucanases
    Plant and microbial xyloglucanases: Function, Structure and Phylogeny Jens Eklöf Doctoral thesis Royal Institute of Technology School of Biotechnology Division of Glycoscience Stockholm 2011 Plant and microbial xyloglucanases: Function, Structure and Phylogeny ISBN 978‐91‐7415‐932‐5 ISSN 1654‐2312 Trita‐BIO Report 2011:7 ©Jens Eklöf, Stockholm 2011 Universitetsservice US AB, Stockholm ii Jens Eklöf Jens Eklöf (2011): Plant and microbial xyloglucanases: Function, Structure and Phylogeny School of Biotechnology, Royal Institute of Technology (KTH), Stockholm, Sweden Abstract In this thesis, enzymes acting on the primary cell wall hemicellulose xyloglucan are studied. Xyloglucans are ubiquitous in land plants which make them an important polysaccharide to utilise for microbes and a potentially interesting raw material for various industries. The function of xyloglucans in plants is mainly to improve primary cell wall characteristics by coating and tethering cellulose microfibrils together. Some plants also utilise xyloglucans as storage polysaccharides in their seeds. In microbes, a variety of different enzymes for degrading xyloglucans have been found. In this thesis, the structure‐function relationship of three different microbial endo‐xyloglucanases from glycoside hydrolase families 5, 12 and 44 are probed and reveal details of the natural diversity found in xyloglucanases. Hopefully, a better understanding of how xyloglucanases recognise and degrade their substrate can lead to improved saccharification processes of plant matter, finding uses in for example biofuel production. In plants, xyloglucans are modified in muro by the xyloglucan transglycosylase/hydrolase (XTH) gene products. Interestingly, closely related XTH gene products catalyse either transglycosylation (XET activity) or hydrolysis (XEH activity) with dramatically different effects on xyloglucan and on cell wall characteristics.
    [Show full text]
  • The Metagenome of an Anaerobic Microbial Community Decomposing Poplar
    1 The metagenome of an anaerobic microbial community decomposing poplar 2 wood chips 3 4 Daniel van der Lelie1,2,3*, Safiyh Taghavi1,2,3, Sean M. McCorkle1,2, Luen-Luen Li1,2, 5 Stephanie A. Malfatti4, Denise Monteleone1,2, Bryon S. Donohoe2,5, Shi-You Ding2,5, 6 William S. Adney2,3,5, Michael E. Himmel2,5, and Susannah G. Tringe4 7 8 1 Biology Department, Brookhaven National Laboratory, Upton, NY, USA 9 2 Oak Ridge National Laboratory, BioEnergy Science Center, Oak Ridge, TN, USA 10 3Center for Agricultural and Environmental Biotechnology, RTI International, Research Triangle 11 Park, NC, USA 12 4 DOE Joint Genome Institute, Walnut Creek, CA, USA 13 5 National Renewable Energy Laboratory, Golden, CO, USA 14 15 16 * Correspondence should be addressed to DvdL: 17 E-mail: [email protected]; Phone: +1-919.316.3532 18 1 1 ABSTRACT 2 This study describes the composition and metabolic potential of a lignocellulosic biomass 3 degrading community that decays poplar wood chips under anaerobic conditions. We examined 4 the community that developed on poplar biomass in a non-aerated bioreactor over the course of a 5 year, with no microbial inoculation other than the naturally occurring organisms on the woody 6 material. The composition of this community contrasts in important ways with biomass- 7 degrading communities associated with higher organisms, which have evolved over millions of 8 years into a symbiotic relationship. Both mammalian and insect hosts provide partial size 9 reduction, chemical treatments (low or high pH environments), and complex enzymatic 10 ‘secretomes’ that improve microbial access to cell wall polymers.
    [Show full text]
  • Genomic, Transcriptomic and Enzymatic Insight Into Lignocellulolytic System of a Plant Pathogen Dickeya Sp
    biomolecules Article Genomic, Transcriptomic and Enzymatic Insight into Lignocellulolytic System of a Plant Pathogen Dickeya sp. WS52 to Digest Sweet Pepper and Tomato Stalk 1, 2, 3, 2 2 Ying-Jie Yang y, Wei Lin y, Raghvendra Pratap Singh * , Qian Xu , Zhihou Chen , Yuan Yuan 1 , Ping Zou 1, Yiqiang Li 1 and Chengsheng Zhang 1,* 1 Marine Agriculture Research Center, Tobacco Research Institute of Chinese Academy of Agricultural Sciences, Qingdao 266101, China; [email protected] (Y.-J.Y.); [email protected] (Y.Y.); [email protected] (P.Z.); [email protected] (Y.L.) 2 Tobacco Research Institute of Nanping, Nanping, Fujian 353000, China; [email protected] (W.L.); [email protected] (Q.X.); [email protected] (Z.C.) 3 Department of Research & Development, Biotechnology, Uttaranchal University, Dehradun 248007, India * Correspondence: [email protected] (R.P.S.); [email protected] (C.Z.) These authors contributed equally to this work. y Received: 31 October 2019; Accepted: 18 November 2019; Published: 20 November 2019 Abstract: Dickeya sp., a plant pathogen, causing soft rot with strong pectin degradation capacity was taken for the comprehensive analysis of its corresponding biomass degradative system, which has not been analyzed yet. Whole genome sequence analysis of the isolated soft-rotten plant pathogen Dickeya sp. WS52, revealed various coding genes which involved in vegetable stalk degradation-related properties. A total of 122 genes were found to be encoded for putative carbohydrate-active enzymes (CAZy) in Dickeya sp. WS52. The number of pectin degradation-related genes, was higher than that of cellulolytic bacteria as well as other Dickeya spp.
    [Show full text]
  • Glucocerebrosidase: Functions in and Beyond the Lysosome
    Journal of Clinical Medicine Review Glucocerebrosidase: Functions in and Beyond the Lysosome Daphne E.C. Boer 1, Jeroen van Smeden 2,3, Joke A. Bouwstra 2 and Johannes M.F.G Aerts 1,* 1 Medical Biochemistry, Leiden Institute of Chemistry, Leiden University, Faculty of Science, 2333 CC Leiden, The Netherlands; [email protected] 2 Division of BioTherapeutics, Leiden Academic Centre for Drug Research, Leiden University, Faculty of Science, 2333 CC Leiden, The Netherlands; [email protected] (J.v.S.); [email protected] (J.A.B.) 3 Centre for Human Drug Research, 2333 CL Leiden, The Netherlands * Correspondence: [email protected] Received: 29 January 2020; Accepted: 4 March 2020; Published: 9 March 2020 Abstract: Glucocerebrosidase (GCase) is a retaining β-glucosidase with acid pH optimum metabolizing the glycosphingolipid glucosylceramide (GlcCer) to ceramide and glucose. Inherited deficiency of GCase causes the lysosomal storage disorder named Gaucher disease (GD). In GCase-deficient GD patients the accumulation of GlcCer in lysosomes of tissue macrophages is prominent. Based on the above, the key function of GCase as lysosomal hydrolase is well recognized, however it has become apparent that GCase fulfills in the human body at least one other key function beyond lysosomes. Crucially, GCase generates ceramides from GlcCer molecules in the outer part of the skin, a process essential for optimal skin barrier property and survival. This review covers the functions of GCase in and beyond lysosomes and also pays attention to the increasing insight in hitherto unexpected catalytic versatility of the enzyme. Keywords: glucocerebrosidase; lysosome; glucosylceramide; skin; Gaucher disease 1.
    [Show full text]
  • A Review of Natural and Engineered Enzymes Involved in Bioethanol Production
    University of Montana ScholarWorks at University of Montana Graduate Student Theses, Dissertations, & Professional Papers Graduate School 2016 A Review of natural and engineered enzymes involved in bioethanol production Ines Cuesta Urena Follow this and additional works at: https://scholarworks.umt.edu/etd Part of the Biochemistry Commons, and the Biotechnology Commons Let us know how access to this document benefits ou.y Recommended Citation Cuesta Urena, Ines, "A Review of natural and engineered enzymes involved in bioethanol production" (2016). Graduate Student Theses, Dissertations, & Professional Papers. 4562. https://scholarworks.umt.edu/etd/4562 This Professional Paper is brought to you for free and open access by the Graduate School at ScholarWorks at University of Montana. It has been accepted for inclusion in Graduate Student Theses, Dissertations, & Professional Papers by an authorized administrator of ScholarWorks at University of Montana. For more information, please contact [email protected]. A REVIEW OF NATURAL AND ENGINEERED ENZYMES INVOLVED IN BIOETHANOL PRODUCTION By Inés Cuesta Ureña Bachelor’s of Science in [Biology], University of Barcelona, Barcelona, Spain, 2011 Professional Paper presented in partial fulfillment of the requirements for the degree of Master of Interdisciplinary Studies The University of Montana Missoula, MT December 2015 Approved by: Sandy Ross, Dean of The Graduate School Graduate School Michael Ceballos, Chair University of Minnesota Morris, Division of Science and Mathematics Sandy Ross, PhD Department of Chemistry Klara Briknarova, PhD Department of Chemistry Biswarup Mukhopadhyay, PhD VirginiaTech, Department of Biochemistry Cuesta Ureña, Inés, M.A., fall 2015 Interdisciplinary Studies A Review of natural and engineered enzymes involved in bioethanol production.
    [Show full text]
  • Gaucher Disease (Glucocerebrosidase/13-Xylosidase/F-Glucosidase/Sphingolipidosis/Glucocerebroside) Yu-BIN CHIAO*, GREGORY M
    Proc. Nati. Acad. Sci. USA Vol. 75, No. 5, pp. 2448-2452, May 1978 Medical Sciences Multiple glycosidase deficiencies in a case of juvenile (type 3) Gaucher disease (glucocerebrosidase/13-xylosidase/f-glucosidase/sphingolipidosis/glucocerebroside) Yu-BIN CHIAO*, GREGORY M. HoYSON*, STEPHEN P. PETERS*, ROBERT E. LEE1, WARREN DIVENt, JEROME V. MURPHY1, AND ROBERT H. GLEW*§ Departments of *Biochemistry and t Pathology, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania 15261, and * Department of Neurology, Milwaukee Children's Hospital, Milwaukee, Wisconsin 53233 Communicated by Albert L. Lehninger, January 16, 1978 ABSTRACT Biochemical investigations were performed nervous system involvement, Gaucher cells in nonneural tissues on autopsy tissues obtained from an 11-year-old girl who died (7), and survival after the 2nd year of life. with the juvenile, subacute neuropathic form of Gaucher dis- ease. In addition to the expected deficiency of glucocerebro- The biochemical basis that distinguishes the three clinical sidase activity, extracts of both liver and kidney from this in- forms of Gaucher disease is unknown. Brady and King (8) have dividual displayed a profound (>90%) deficiency of "soluble" suggested that the severity of the disease is related to the degree P-glucosidase, ft-xylosidase, and P-galactosidase activities. Fi- of deficiency of glucocerebrosidase activity. However, a broblasts obtained from this individual also contained markedly number of laboratories have not found a correlation between reduced levels of ,-xylosidase activity but normal levels of ft- the degree of deficiency of glucocerebrosidase activity and the D-fucosidase and P-galactosidase activity. Because the soluble -glucosidase,,-xylosidase, and a portion of the fl-galactosidase extent of pathology or organ involvement in various forms of activities from control human liver all cochromatographed on Gaucher disease (11-13).
    [Show full text]
  • Supplementary File 1 (PDF, 225 Kib)
    ("autophagy"[MeSH Terms] OR "autophagy"[All Fields] OR "lysosomes"[MeSH Terms] OR "lysosomes"[All Fields] OR (lysosomal[All Fields] AND ("enzymes"[MeSH Terms] OR "enzymes"[All Fields] OR "enzyme"[All Fields])) OR "mitochondrial degradation"[MeSH Terms] OR ("mitochondrial"[All Fields] AND "degradation"[All Fields]) OR "mitochondrial degradation"[All Fields] OR "mitophagy"[All Fields] OR (AGA[All Fields] OR ("aspartylglucosylaminase"[MeSH Terms] OR "aspartylglucosylaminase"[All Fields] OR "aspartylglucosaminidase"[All Fields])) OR (ARSA[All Fields] OR ("arylsulphatase a"[All Fields] OR "cerebroside-sulfatase"[MeSH Terms] OR "cerebroside-sulfatase"[All Fields] OR "arylsulfatase a"[All Fields])) OR (ARSB[All Fields] OR ("arylsulphatase b"[All Fields] OR "n- acetylgalactosamine-4-sulfatase"[MeSH Terms] OR "n-acetylgalactosamine-4-sulfatase"[All Fields] OR "arylsulfatase b"[All Fields])) OR (ASAH1[All Fields] OR ("ceramidases"[MeSH Terms] OR "ceramidases"[All Fields] OR "n acylsphingosine amidohydrolase"[All Fields])) OR ATP13A2[All Fields] OR CLN3[All Fields] OR CLN5[All Fields] OR CLN6[All Fields] OR CLN8[All Fields] OR (CTNS[All Fields] OR cystinosin[All Fields]) OR (CTSA[All Fields] OR "cathepsin a"[MeSH Terms] OR "cathepsin a"[All Fields]) OR (CTSD[All Fields] OR "cathepsin d"[MeSH Terms] OR "cathepsin d"[All Fields]) OR (CTSF[All Fields] OR "cathepsin f"[MeSH Terms] OR "cathepsin f"[All Fields]) OR (CTSF[All Fields] OR "cathepsin f"[MeSH Terms] OR "cathepsin f"[All Fields]) OR DNAJC5[All Fields] OR (FUCA1[All Fields] OR (("alpha-l-fucosidase"[MeSH
    [Show full text]