Cancer: an Evolutionary Perspective
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Alpha-Satellite RNA Transcripts Are Repressed by Centromere
RESEARCH ARTICLE Alpha-satellite RNA transcripts are repressed by centromere–nucleolus associations Leah Bury1†, Brittania Moodie1†, Jimmy Ly1,2, Liliana S McKay1, Karen HH Miga3, Iain M Cheeseman1,2* 1Whitehead Institute for Biomedical Research, Cambridge, United States; 2Department of Biology, Massachusetts Institute of Technology, Cambridge, United States; 3UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, United States Abstract Although originally thought to be silent chromosomal regions, centromeres are instead actively transcribed. However, the behavior and contributions of centromere-derived RNAs have remained unclear. Here, we used single-molecule fluorescence in-situ hybridization (smFISH) to detect alpha-satellite RNA transcripts in intact human cells. We find that alpha-satellite RNA- smFISH foci levels vary across cell lines and over the cell cycle, but do not remain associated with centromeres, displaying localization consistent with other long non-coding RNAs. Alpha-satellite expression occurs through RNA polymerase II-dependent transcription, but does not require established centromere or cell division components. Instead, our work implicates centromere– nucleolar interactions as repressing alpha-satellite expression. The fraction of nucleolar-localized centromeres inversely correlates with alpha-satellite transcripts levels across cell lines and transcript levels increase substantially when the nucleolus is disrupted. The control of alpha-satellite transcripts by centromere-nucleolar contacts provides a mechanism to modulate centromere transcription and chromatin dynamics across diverse cell states and conditions. *For correspondence: [email protected] †These authors contributed equally to this work Introduction Chromosome segregation requires the function of a macromolecular kinetochore structure to con- Competing interests: The nect chromosomal DNA and spindle microtubule polymers. -
CATALOG NUMBER: AKR-213 STORAGE: Liquid Nitrogen Note
CATALOG NUMBER: AKR-213 STORAGE: Liquid nitrogen Note: For best results begin culture of cells immediately upon receipt. If this is not possible, store at -80ºC until first culture. Store subsequent cultured cells long term in liquid nitrogen. QUANTITY & CONCENTRATION: 1 mL, 1 x 106 cells/mL in 70% DMEM, 20% FBS, 10% DMSO Background HeLa cells are the most widely used cancer cell lines in the world. These cells were taken from a lady called Henrietta Lacks from her cancerous cervical tumor in 1951 which today is known as the HeLa cells. These were the very first cell lines to survive outside the human body and grow. Both GFP and blasticidin-resistant genes are introduced into parental HeLa cells using lentivirus. Figure 1. HeLa/GFP Cell Line. Left: GFP Fluorescence; Right: Phase Contrast. Quality Control This cryovial contains at least 1.0 × 106 HeLa/GFP cells as determined by morphology, trypan-blue dye exclusion, and viable cell count. The HeLa/GFP cells are tested free of microbial contamination. Medium 1. Culture Medium: D-MEM (high glucose), 10% fetal bovine serum (FBS), 0.1 mM MEM Non- Essential Amino Acids (NEAA), 2 mM L-glutamine, 1% Pen-Strep, (optional) 10 µg/mL Blasticidin. 2. Freeze Medium: 70% DMEM, 20% FBS, 10% DMSO. Methods Establishing HeLa/GFP Cultures from Frozen Cells 1. Place 10 mL of complete DMEM growth medium in a 50-mL conical tube. Thaw the frozen cryovial of cells within 1–2 minutes by gentle agitation in a 37°C water bath. Decontaminate the cryovial by wiping the surface of the vial with 70% (v/v) ethanol. -
Ervmap Analysis Reveals Genome-Wide Transcription of INAUGURAL ARTICLE Human Endogenous Retroviruses
ERVmap analysis reveals genome-wide transcription of INAUGURAL ARTICLE human endogenous retroviruses Maria Tokuyamaa, Yong Konga, Eric Songa, Teshika Jayewickremea, Insoo Kangb, and Akiko Iwasakia,c,1 aDepartment of Immunobiology, Yale School of Medicine, New Haven, CT 06520; bDepartment of Internal Medicine, Yale University School of Medicine, New Haven, CT 06520; and cHoward Hughes Medical Institute, Chevy Chase, MD 20815 This contribution is part of the special series of Inaugural Articles by members of the National Academy of Sciences elected in 2018. Contributed by Akiko Iwasaki, October 23, 2018 (sent for review August 24, 2018; reviewed by Stephen P. Goff and Nir Hacohen) Endogenous retroviruses (ERVs) are integrated retroviral elements regulates expression of IFN-γ–responsive genes, such as AIM2, that make up 8% of the human genome. However, the impact of APOL1, IFI6, and SECTM1 (16). ERV elements can drive ERVs on human health and disease is not well understood. While transcription of genes, generate chimeric transcripts with protein- select ERVs have been implicated in diseases, including autoim- coding genes in cancer, serve as splice donors or acceptors mune disease and cancer, the lack of tools to analyze genome- for neighboring genes, and be targets of recombination and in- wide, locus-specific expression of proviral autonomous ERVs has crease genomic diversity (17, 18). ERVs that are elevated in hampered the progress in the field. Here we describe a method breast cancer tissues correlate with the expression of granzyme called ERVmap, consisting of an annotated database of 3,220 hu- and perforin levels, implying a possible role of ERVs in immune man proviral ERVs and a pipeline that allows for locus-specific surveillance of tumors (19). -
Cancer Prevention Works. Reliable. Trusted. Scientific
The work of CDC in 2018 included innovative communication approaches to promote cancer prevention, screening and early detection, research, and evidence-based programs. Achieving Progress in Programs CDC’s National Comprehensive Cancer Control Program CDC’s Colorectal Cancer Control Program (CRCCP) supported (NCCCP) celebrated 20 years of providing guidance to help 30 state, university, tribal organization grantees partnering programs put sustainable plans in action to prevent and with health systems to increase colorectal cancer screening in control cancer. More than 98,000 people have contributed high-need populations. For the 413 clinics enrolled in program to cancer coalitions and 69 cancer plans have been created year 1, screening rates increased 8.3 percentage points by the and updated. end of program year 2. Improving and Connecting Data to Prevention Through the National Program of Cancer Registries (NPCR), data is now available for cancer prevalence and survival rates, along with incidence and mortality data at the national, state, and county level. Data can be easily and quickly viewed in multiple formats using our new interactive data visualization tool. Publications: Using Data to Inform Prevention Strategies Uterine cancer incidence and death rates increased among women in United States from 1999–2016. (Morbidity and Mortality Weekly Report (MMWR)). CDC’s skin cancer prevention study demonstrates that state indoor tanning laws work as policy interventions to reduce indoor tanning behavior among adolescents. (American Journal of Public Health (AJPH)). Study results showed that the nation achieved the Healthy People 2020 target to reduce indoor tanning prevalence to 14% among CDC’s human papillomavirus adolescents in (HPV) study shows increasing grades 9 through rates of new HPV-associated 12, several years cancers among men and ahead of time. -
Principles of Cancer Prevention and Will Emphasize the Scientific Underpinnings of This Emerging Discipline
Seminars in Oncology Nursing, Vol 21, No 4 (November), 2005: pp 229-235 229 OBJECTIVE: To summarize the scientific prin- ciples underlying cancer preven- tion. PRINCIPLES OF DATA SOURCES: Articles, text books, personal com- CANCER munications, and experience. CONCLUSION: PREVENTION The scientific basis of cancer pre- vention is complex and involves experimental and epidemiologic approaches and clinical trials. FRANK L. MEYSKENS,JR AND PATRICIA TULLY IMPLICATIONS FOR NURSING PRACTICE: ANCER prevention has classically encompassed As more information becomes three large areas of clinical practice: prevention, available regarding proven and screening, and early detection. Several excellent potential cancer-prevention strate- reviews and book chapters have been published gies, oncology nurses are regu- involving these topics.1-3 The importance of bio- larly called upon to guide patients Clogical and molecular markers as potential surrogates have been and others in making choices re- emphasized in the past several years,4,5 and more recently precan- garding preventative options. It is cers or intraepithelial neoplasia (IEN) have become a target.6,7 The important for oncology nurses to integration of the well-established approaches of prevention, stay abreast of this growing body screening, and early detection with biological measures of disease of knowledge. risk, progression, and prognosis has become the hallmark of mod- ern cancer prevention (see Fig 1). In this article we will review the principles of cancer prevention and will emphasize the scientific underpinnings of this emerging discipline. The principles of cancer prevention have evolved from three separate scientific disciplines: carcinogenesis, epidemiology, and clinical trials. Many other areas From the Department of Medicine and of science and medicine, including genetics and the behavioral Biological Chemistry, Chao Family Com- sciences, are contributing to this evolving and complex field. -
High-Level Expression of the HIV Entry Inhibitor Griffithsin from the Plastid Genome and Retention of Biological Activity in Dried Tobacco Leaves
Plant Molecular Biology (2018) 97:357–370 https://doi.org/10.1007/s11103-018-0744-7 High-level expression of the HIV entry inhibitor griffithsin from the plastid genome and retention of biological activity in dried tobacco leaves Matthijs Hoelscher1 · Nadine Tiller1,3 · Audrey Y.‑H. Teh2 · Guo‑Zhang Wu1 · Julian K‑C. Ma2 · Ralph Bock1 Received: 20 April 2018 / Accepted: 29 May 2018 / Published online: 9 June 2018 © The Author(s) 2018 Abstract Key message The potent anti-HIV microbicide griffithsin was expressed to high levels in tobacco chloroplasts, ena- bling efficient purification from both fresh and dried biomass, thus providing storable material for inexpensive production and scale-up on demand. Abstract The global HIV epidemic continues to grow, with 1.8 million new infections occurring per year. In the absence of a cure and an AIDS vaccine, there is a pressing need to prevent new infections in order to curb the disease. Topical microbicides that block viral entry into human cells can potentially prevent HIV infection. The antiviral lectin griffithsin has been identified as a highly potent inhibitor of HIV entry into human cells. Here we have explored the possibility to use transplastomic plants as an inexpensive production platform for griffithsin. We show that griffithsin accumulates in stably transformed tobacco chloroplasts to up to 5% of the total soluble protein of the plant. Griffithsin can be easily purified from leaf material and shows similarly high virus neutralization activity as griffithsin protein recombinantly expressed in bacteria. We also show that dried tobacco provides a storable source material for griffithsin purification, thus enabling quick scale-up of production on demand. -
THE CANCER WHICH SURVIVED: Insights from the Genome of an 11,000 Year-Old Cancer
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Apollo THE CANCER WHICH SURVIVED: Insights from the genome of an 11,000 year-old cancer Andrea Strakova and Elizabeth P. Murchison Department of Veterinary Medicine, University of Cambridge, Madingley Road, Cambridge, CB3 0ES, UK [email protected] and [email protected] ABSTRACT The canine transmissible venereal tumour (CTVT) is a transmissible cancer that is spread between dogs by the allogeneic transfer of living cancer cells during coitus. CTVT affects dogs around the world and is the oldest and most divergent cancer lineage known in nature. CTVT first emerged as a cancer about 11,000 years ago from the somatic cells of an individual dog, and has subsequently acquired adaptations for cell transmission between hosts and for survival as an allogeneic graft. Furthermore, it has achieved a genome configuration which is compatible with long-term survival. Here, we discuss and speculate on the evolutionary processes and adaptions which underlie the success of this remarkable lineage. INTRODUCTION The canine transmissible venereal tumour (CTVT) (Figure 1A) is a cancer that first emerged as a tumour affecting an individual dog that lived about 11,000 years ago [1-3]. Rather than dying together with its original host, the cells of this cancer are still alive today, having been passaged between dogs by the transfer of living cancer cells during coitus (Figure 1B). The genome of CTVT, which has recently been sequenced, bears the imprint of the evolutionary history of this extraordinary cell lineage [1]. -
Chemical Tools for Synthesis, Modification, and Analysis of Lipids
Chemical Society Reviews Chemical tools for synthesis, modification, and analysis of lipids Journal: Chemical Society Reviews Manuscript ID CS-TRV-02-2020-000154.R1 Article Type: Tutorial Review Date Submitted by the 12-May-2020 Author: Complete List of Authors: Flores, Judith; University of California, San Diego, Chemistry & Biochemistry White, Brittany; Cornell University, Chemistry and Chemical Biology Brea, Roberto; University of California, San Diego, Chemistry & Biochemistry Baskin, Jeremy; Cornell University, Chemistry and Chemical Biology Devaraj, Neal; University of California, San Diego, Chemistry and Biochemistry Page 1 of 13 PleaseChemical do not Society adjust Reviews margins TUTORIAL REVIEW Lipids: chemical tools for their synthesis, modification, and analysis †a †b a b, a, Received 00th January 20xx, Judith Flores, Brittany M. White, Roberto J. Brea, Jeremy M. Baskin * and Neal K. Devaraj * Accepted 00th January 20xx Lipids remain one of the most enigmatic classes of biological molecules. Whereas lipids are well known to form basic units DOI: 10.1039/x0xx00000x of membrane structure and energy storage, deciphering the exact roles and biological interactions of distinct lipid species rsc.li/chem-soc-rev has proven elusive. How these building blocks are synthesized, trafficked, and stored are also questions that require closer inspection. This tutorial review covers recent advances on the preparation, derivatization, and analysis of lipids. In particular, we describe several chemical approaches that form part of a powerful toolbox for controlling and characterizing lipid structure. We believe these tools will be helpful in numerous applications, including the study of lipid-protein interactions and the development of novel drug delivery systems. Key learning points 1. -
Breakdown of Hela Cell DNA Mediated by Vaccinia Virus (Viral DNA/Alkaline Sucrose Gradients) J
Proc. Nat. Acad. Sci. USA Vol. 70, No. 11, pp. 3200-3204, November 1973 Breakdown of HeLa Cell DNA Mediated by Vaccinia Virus (viral DNA/alkaline sucrose gradients) J. RODNEY PARKHURST, A. R. PETERSON, AND CHARLES HEIDELBERGER* McArdle Laboratory for Cancer Research, University of Wisconsin, Madison, Wis. 53706 Communicated by Kenneth B. Raper, July 9, 1973 ABSTRACT Breakdown of HeLa cell DNA begins within occurs as an early event in the infection process, and that 90 min after infection with vaccinia virus at a multiplicity host-cell DNA does not appear to be reutilized for the syn- of infection of 2-plaque-forming units per cell, and ends about 7.5 hr after infection. HeLa cell DNA is degraded thesis of class I viral DNA. to a uniform size of 1 to 2 X 107 daltons, as judged by MATERIALS AND METHODS alkaline sucrose sedimentation analysis. The rate of host- cell DNA degradation by vaccinia virus increased directly Cell Culture, Virus, and Mode of Infection. The basic tech- with the multiplicity of infection. Sedimentation pat- niques were the same as those described by Oki et al. (8). terns in neutral and alkaline sucrose gradients of viral DNA from infected cells, as well as from partially purified HeLa S3 cells and vaccinia virus (WR strain) used in these virions, indicated that two size classes of DNA were pres- experiments were shown to be free of mycoplasma by a modi- ent. Class 1 DNA sediments like T4 DNA in neutral gra- fied Hayflick method (11). dients and has a molecular weight twice that of T4 DNA in alkaline gradients. -
Survivin Mediates Paclitaxel Effect in Hela That Survivin May Play an Important Role in Hela Western Blot Cells Apoptosis17
European Review for Medical and Pharmacological Sciences 2017; 21: 3504-3509 Down-regulation of survivin enhances paclitaxel-induced Hela cell apoptosis F. GU1, L. LI2, Q.-F. YUAN3, C. LI4, Z.-H. LI4 1Department of Obstetrics, Affiliated Hospital of Qingdao University, Qingdao, Shandong Province, China 2Department of Pediatrics, Affiliated Hospital of Qingdao University, Qingdao, Shandong Province, China 3Department of Gynecology and Obstetrics, Huangdao Qingdao District Wang Tai Center Hospital, Qingdao, China 4Department of Gynecology, Qingdao Haici Hospital, Qingdao, Shandong Province, China Abstract. – OBJECTIVE: Paclitaxel is one of success rate of cervical cancer treatment is a big the common anticancer drugs in the treatment challenge in the medical field. Targeted therapy of cervical cancer, while the mechanism of re- is the first choice in clinic8,9. The curative effect straining and killing cancer cells is still unclear. This study aimed to investigate the molecular of current molecular targeting anti-apoptotic pro- mechanism of paclitaxel in regulating prolifera- teins, such as survivin and apollon on cervical tion and apoptosis of cervical cancer Hela cells. cancer, is still not satisfactory. Therefore, it is MATERIALS AND METHODS: Paclitaxel at 2 urgently required to explore more effective mole- μmol/L was used to treat Hela cells for 48 h. MTT cular targets for the treatment of cervical cancer assay and flow cytometry were applied to test He- in clinic. Paclitaxel is a kind of important first-li- la cells proliferation and apoptosis respective- ne anticancer drug for the treatment of cervical ly. Western blot was adopted to determine the ex- 10 pression of survivin. SiRNA was performed to cancer . -
Common Read the Immortal Life of Henrietta Lacks Our Common Read
Common Read The Immortal Life of Henrietta Lacks Our common read book has inter-disciplinary value/relevance, covering social and biological sciences as well as humanities and education including scientific/medical ethics, nursing, biology, genetics, psychology, sociology, communication, business, criminal justice, history, deaf studies and social justice. Below are chapter summaries that focus on the above disciplines to give respective faculty ideas about how the book can be used for their courses. Part One: Life 1. The Exam….1951: A medical visit at Johns Hopkins, Baltimore, the “northern most Southern city.” Although Johns Hopkins is established as an indigent hospital, Jim Crow era policies/ideologies are pervasive in the care/treatment of black patients. 2. Clover…1920-1942: Birthplace of Henrietta and several of the Lacks family members, including Day, Henrietta’s cousin, husband, and father of her children. A “day in the life” snapshot of life and work in this rural agricultural small town with distinct social/economic divisions across race and socioeconomic status. 3. Diagnosis and Treatment…1951: Henrietta’s diagnosis of cervical carcinomas with a history/statistical profile of diagnostic techniques and prevailing treatment regime of the time. Henrietta’s statement of consent to operative procedures is given along with removal of cancerous tissue and subsequent radium insertion into her cervix. 4. The Birth of HeLa…1951: In depth discussion of the Johns Hopkins lab including the development of an appropriate medium to grow cells. HeLa cells, the first immortal line, are born in this meticulously sterilized lab by the Geys. 5. “Blackness Be Spreadin All Inside”…1951: A look back at the lively, fun loving youthful Henrietta compared to some of the heartache of the birth of Henrietta’s second daughter, Elsie, who was born “special” (epileptic, deaf, and unable to speak). -
9Ways to Reduce Your Cancer Risk
9 ways to reduce your cancer risk Up to half of cancer cases in the United States could be prevented through healthy lifestyle behaviors. Maintain a healthy weight Being overweight or obese increases your risk for certain cancers, including uterine, colorectal and post-menopausal breast cancer. Eat a plant-based diet Fill 2/3 of your plate with vegetables, fruits and whole grains. Fill the remaining 1/3 with lean animal protein or plant-based protein. Limit red meat and processed meat. Stay active Sit less. Aim for at least 150 minutes of moderate or 75 minutes of vigorous physical activity each week. Do muscle-strengthening exercises at least twice a week. Don’t smoke or use tobacco If you do smoke, quit by using a program that includes a combination of medications, nicotine replacement like patches or gum, and counseling. Vaping has not been proven as a safe alternative to smoking or as a smoking cessation tool. Limit alcohol For cancer prevention, it’s best not to drink alcohol. It is linked to several cancers, including breast, colorectal and liver cancer. Get vaccinated All males and females ages 9–26 should get the HPV vaccine. It is most effective when given at ages 11–12. Unvaccinated men and women ages 27–45 should talk to their doctor about the benefits of the vaccine. Children and adults should be vaccinated against hepatitis B. Get screened Screening exams can find cancer early, when it is most treatable. They also find viruses that increase your cancer risk. Ask your doctor about screening exams for you based on your age, gender and risk factors.