Environmental Management Plan Water Mouse (Xeromys Myoides)

Total Page:16

File Type:pdf, Size:1020Kb

Environmental Management Plan Water Mouse (Xeromys Myoides) Environmental Management Plan Water Mouse (Xeromys myoides) QCLNG-AUS-PMT-ENV-PLN-0675 Rev 6 June 2013 Controlled Uncontrolled Restricted Confidential Environmental Management Plan – Water Mouse QCLNG-AUS-PMT-ENV-PLN-0675 Revision 6– June 2013 Uncontrolled when printed QUEENSLAND CURTIS LNG PROJECT 2 of 36 Environmental Management Plan – Water Mouse QCLNG-AUS-PMT-ENV-PLN-0675 Revision 6– June 2013 DOCUMENT INFORMATION SHEET TITLE: Environmental Management Plan – Water Mouse (Xeromys myoides) PURPOSE AND SCOPE: This document is prepared and submitted for approval to SEWPC in response to and in satisfaction of: Conditions 16 and 17 of Queensland Curtis LNG Project - LNG Marine Facilities, EPBC No 2008/4401. Conditions 32 and 33 of Queensland Curtis LNG Project - LNG Plant and Onshore Facilities, EPBC No 2008/4402. Condition 12 and 29 (a) of Queensland Curtis LNG Project – Pipeline Network, EPBC No 2008/4399. In accordance with these conditions, this document applies to actions and approvals necessary prior to commencement and relates to the LNG facility and associated infrastructure. This Plan also has relevance to Condition 1 of Queensland Curtis LNG Project – Shipping Activity associated with the Queensland Curtis LNG Project, EPBC No 2008/4405, inasmuch as it serves to identify any Water Mouse nesting in proximity to the QCLNG site, and therefore is relevant to the transit of vessels associated with construction and operation of these facilities. Conservation Status Given that fauna surveys carried out in accordance Biology with EPBC Act guidelines prior to this Management Distribution Habitat Preference Plan, by QGC and others, were unable to confirm the Phase One Threats and threatening processes presence of the Water Mouse, the current Plan utilized Confirmatory Pre-Clearance Survey Methods a two-phased Management Plan approach (opposite). Pre‐Clearance Survey Scope of Work Given the recent identification of Water Mouse in the (If local presence is confirmed) QCLNG project threats vicinity of the Narrows bundled crossing, this plan has Mitigating actions Phase Two Offsets been updated and impact mitigations have been Finalise Management Monitoring & management developed specific to this activity. 3 of 36 Environmental Management Plan – Water Mouse QCLNG-AUS-PMT-ENV-PLN-0675 Revision 6– June 2013 Table of Contents 1.0 INTRODUCTION 5 1.1 Scope of Document 5 1.2 Background 5 1.3 Document Revisions and Approval 6 1.4 Distribution and Intended Audience 6 1.5 Definitions 7 1.6 Referenced / Associated Documents 8 1.7 Responsibilities 8 1.7.1 Implementation of the Plan 8 1.7.2 Performance of survey field work 8 2.0 WATER MOUSE ENVIRONMENTAL MANAGEMENT PLAN 10 2.1 Structure of the Plan 10 2.2 Relevant Ecology 10 2.2.1 Current legal status 10 2.2.2 Known Distribution 10 2.2.3 Known populations and regional relationships 11 2.2.4 LNG Industry EIS Surveys (pre October 2010) 12 2.2.5 Confirmed sightings from QGC pre-clearance surveys 14 2.2.6 Biology & Reproduction 14 2.2.7 Habitat Preferences 18 2.2.8 Known Threats 24 2.2.9 Threats Related to the QCLNG Project 25 2.2.10 Relevant Management Practices to Minimise Impacts 28 2.2.11 Proposed Offsets to Compensate for Impacts 33 3.0 REFERENCES 34 Table of Contents – Appendices Appendix A – Statement of Site Survey Findings 35 4 of 36 Environmental Management Plan – Water Mouse QCLNG-AUS-PMT-ENV-PLN-0675 Revision 6– June 2013 1.0 INTRODUCTION 1.1 Scope of Document This document is prepared and submitted for approval to the Federal Government Department of Sustainability, Environment, Water, Population and Communities (SEWPC) in response to and in satisfaction of: Conditions 16 and 17 of Queensland Curtis LNG Project - LNG Marine Facilities, EPBC No 2008/4401. Conditions 32 and 33 of Queensland Curtis LNG Project - LNG Plant and Onshore Facilities, EPBC No 2008/4402. Condition 12 and 29 (a) of Queensland Curtis LNG Project – Pipeline Network, EPBC No 2008/4399. This Plan also has relevance to Condition 1 of Queensland Curtis LNG Project – Shipping Activity associated with the Queensland Curtis LNG Project, EPBC No 2008/4405, inasmuch as it serves to identify any Water Mouse nesting in proximity to the QCLNG site, and therefore is relevant to the transit of vessels associated with construction and operation of these facilities. Given the presence of EPBC Act designated ‘likely habitat’ at the LNG site and along the Narrows bundled crossing section of QGC’s pipeline, this document applies to relevant portions of both Pipeline and Midstream works. QCLNG have divided the Narrows bundled crossing into five sections: Phillipies Landing Road Section – includes the linear pipeline corridor from approximately KP 334 to KP 336 and proposed associated infrastructure laydown area within the bushland environment on the western, ‘mainland’, side of the Narrows bundled crossing corridor. Creek Section – includes Humpy and Targinie Creeks, which are both tidal creeks fringed by tidal mangroves and adjacent mudflats. This section runs from approximately KP 336 to KP 337. Marshland Section – includes the tidally inundated, non-vegetated mudflats and mangrove environments to the south of Kangaroo Island between Targinie Creek and Friend Point. This section runs from approximately KP 337 to KP 339. The Narrows Section – refers to the deep body of water associated with the Narrows channel. This section runs from approximately KP 339 to KP 341. The Curtis Island Section – includes the linear corridor extending from south of Laird Point to the QCLNG LNG plant facility from approximately KP 341 to KP 346. Targeted surveys for Water Mouse were undertaken in the Phillipies Landing Road Section, the Creek Section, the Marshland Section, and the Curtis Island Section. The full text of the relevant SEWPC Conditions can be found at: http://www.environment.gov.au/epbc/notices/index.html 1.2 Background This Water Mouse Environmental Management Plan (the Plan) has been prepared in response to confirmation of the presence of Water Mouse within the Narrows bundled crossing section of the QCLNG pipeline corridor footprint. Prior to May 2011 there were no confirmed sightings of the Water Mouse on the QCLNG sites (pipeline corridor or LNG site). The following is a brief description of the events that have occurred that have contributed to the development of this revised Plan: 5 of 36 Environmental Management Plan – Water Mouse QCLNG-AUS-PMT-ENV-PLN-0675 Revision 6– June 2013 Pre-clearance surveys for Water Mouse were conducted in September and October of 2010 to determine the likelihood of occurrence and extent of potential habitat within the Project site. The Water Mouse was not detected during these surveys, however potential habitat was identified. QGC developed an Environmental Management Plan for the Water Mouse (revisions 1 – 3) based on the results of the 2010 pre-clearance surveys and submitted it to SEWPC for approval. Revision 3 of the Environmental Management Plan was approved by SEWPC on the 29th January 2011. Additional pre-clearance surveys for the Water Mouse and other threatened species were conducted in May, June and July 2011. The Water Mouse was identified to occur adjacent to the alignment on the Creek and Marshland sections of the Narrows bundled crossing from trapping surveys. In response to information about confirmed presence of Water Mouse, and according to Revision 3, this Plan was prepared to identify and manage potential impacts of the Project on the local Water Mouse population. This plan reflects QGC’s commitment to improving knowledge of the distribution and abundance of the Water Mouse in the Port Curtis region. 1.3 Document Revisions and Approval This document has been prepared by the QCLNG Environment team with assistance from GHD and RPS ecology experts. This document shall be reviewed and endorsed in accordance with the Document Information Sheet on Page 2 and the Project Document Approval Procedure. Activities that would require a revision to this document would include a significant scale change in construction methodology, or the identification of water mouse nests within the construction footprint. The revised management plan will then be submitted for the approval of the Minister. This document bears a revision status identifier that will change with each revision. All revisions to this document (after approval and distribution) will be subject to review and endorsement by the same functions as the original. The plan will be reviewed every 2 years for information relating to construction activity, ongoing fauna surveys and results and, if required, a plan revision will be initiated following each review. It is expected that this plan will be implemented over the construction period and subsequent monitoring period (5 years) post construction. 1.4 Distribution and Intended Audience This document is intended for Midstream and Pipeline Project Team members as well as other Project stakeholders. The document will be made available via the Document Management System and by direct distribution to relevant external parties. This document will be updated during subsequent project lifecycle stages and changes communicated to the project team as applicable. 6 of 36 Environmental Management Plan – Water Mouse QCLNG-AUS-PMT-ENV-PLN-0675 Revision 6– June 2013 1.5 Definitions In this document, the following definitions apply: Term Meaning Commencement of the As defined in the relevant Referral Conditions at action http://www.environment.gov.au/epbc/notices/index.html . SEWPC Department of Sustainability, Environment, Water, Population and Communities Department Department means the Australian Government department responsible for administering Part 4 of the EPBC Act. SEWPC Conditions Conditions 16 and 17 of Queensland Curtis LNG Project – LNG Marine Facilities, EPBC No 2008/4401. Conditions 32 and 33 of Queensland Curtis LNG Project – LNG Plant and Onshore Facilities, EPBC No 2008/4402. Condition 1 of Queensland Curtis LNG Project – Shipping Activity associated with the Queensland Curtis LNG Project, EPBC No 2008/4405.
Recommended publications
  • Rodents Bibliography
    Calaby’s Rodent Literature Abbott, I.J. (1974). Natural history of Curtis Island, Bass Strait. 5. Birds, with some notes on mammal trapping. Papers and Proceedings of the Royal Society of Tasmania 107: 171–74. General; Rodents Abbott, I. (1978). Seabird islands No. 56 Michaelmas Island, King George Sound, Western Australia. Corella 2: 26–27. (Records rabbit and Rattus fuscipes). General; Rodents; Lagomorphs Abbott, I. (1981). Seabird Islands No. 106 Mondrain Island, Archipelago of the Recherche, Western Australia. Corella 5: 60–61. (Records bush-rat and rock-wallaby). General; Rodents Abbott, I. and Watson, J.R. (1978). The soils, flora, vegetation and vertebrate fauna of Chatham Island, Western Australia. Journal of the Royal Society of Western Australia 60: 65–70. (Only mammal is Rattus fuscipes). General; Rodents Adams, D.B. (1980). Motivational systems of agonistic behaviour in muroid rodents: a comparative review and neural model. Aggressive Behavior 6: 295–346. Rodents Ahern, L.D., Brown, P.R., Robertson, P. and Seebeck, J.H. (1985). Application of a taxon priority system to some Victorian vertebrate fauna. Fisheries and Wildlife Service, Victoria, Arthur Rylah Institute of Environmental Research Technical Report No. 32: 1–48. General; Marsupials; Bats; Rodents; Whales; Land Carnivores Aitken, P. (1968). Observations on Notomys fuscus (Wood Jones) (Muridae-Pseudomyinae) with notes on a new synonym. South Australian Naturalist 43: 37–45. Rodents; Aitken, P.F. (1969). The mammals of the Flinders Ranges. Pp. 255–356 in Corbett, D.W.P. (ed.) The natural history of the Flinders Ranges. Libraries Board of South Australia : Adelaide. (Gives descriptions and notes on the echidna, marsupials, murids, and bats recorded for the Flinders Ranges; also deals with the introduced mammals, including the dingo).
    [Show full text]
  • The Ecology and Conservation of the Water Mouse (Xeromys Myoides) Along the Maroochy River Catchment in Southeast Queensland
    The ecology and conservation of the water mouse (Xeromys myoides) along the Maroochy River Catchment in southeast Queensland. Janina Lyn Deborah Kaluza Bachelor of Environmental Science A thesis submitted for the degree of Master of Philosophy at The University of Queensland in 2018 School of Agriculture, Food and Sciences i Abstract The water mouse is one of Australia’s most enigmatic, intriguing and little-known vertebrate species. It is also in decline and confronted with a wide range of threats. Locally, the demise of one water mouse population along the Coomera River was documented in 2006 within an area where urban and industrial development pressures are paramount for this species and their associated habitat. Improvement of its conservation status is supported by a National Recovery Plan aimed at habitat protection. However, direct human actions threatening water mouse recovery are poorly monitored and inhibit conservation efforts. Therefore, new research methods are required that include an understanding of population dynamics, gestation cycles, but most importantly, the life span of this elusive species as the additional knowledge on this species association to habitat is critical to its survival. In order to address these deficiencies, logically developed research projects form the framework of this thesis that link new locality records of the species distribution and density across southeast Queensland. The exhausted survey efforts located 352 nests in coastal wetlands between Eurimbula National Park and the Pumicestone Passage to determine the species nest structure and association with plant presence. Consistent monitoring of individual water mouse nests investigated nest building and seasonal behavior; movements and habitat use of the water mouse; impacts and management of foxes, pigs and cats within water mouse territory.
    [Show full text]
  • A Global-Scale Evaluation of Mammalian Exposure and Vulnerability to Anthropogenic Climate Change
    A Global-Scale Evaluation of Mammalian Exposure and Vulnerability to Anthropogenic Climate Change Tanya L. Graham A Thesis in The Department of Geography, Planning and Environment Presented in Partial Fulfillment of the Requirements for the Degree of Master of Science (Geography, Urban and Environmental Studies) at Concordia University Montreal, Quebec, Canada March 2018 © Tanya L. Graham, 2018 Abstract A Global-Scale Evaluation of Mammalian Exposure and Vulnerability to Anthropogenic Climate Change Tanya L. Graham There is considerable evidence demonstrating that anthropogenic climate change is impacting species living in the wild. The vulnerability of a given species to such change may be understood as a combination of the magnitude of climate change to which the species is exposed, the sensitivity of the species to changes in climate, and the capacity of the species to adapt to climatic change. I used species distributions and estimates of expected changes in local temperatures per teratonne of carbon emissions to assess the exposure of terrestrial mammal species to human-induced climate change. I evaluated species vulnerability to climate change by combining expected local temperature changes with species conservation status, using the latter as a proxy for species sensitivity and adaptive capacity to climate change. I also performed a global-scale analysis to identify hotspots of mammalian vulnerability to climate change using expected temperature changes, species richness and average species threat level for each km2 across the globe. The average expected change in local annual average temperature for terrestrial mammal species is 1.85 oC/TtC. Highest temperature changes are expected for species living in high northern latitudes, while smaller changes are expected for species living in tropical locations.
    [Show full text]
  • Niche Differentiation, Rarity, and Commonness in the Sympatric Australian White-Tailed Rats: Uromys Caudimaculatus and Uromys Hadrourus
    This file is part of the following reference: Moore, Leslie Allan (2010) Niche differentiation, rarity, and commonness in the sympatric Australian white-tailed rats: Uromys caudimaculatus and Uromys hadrourus. PhD thesis, James Cook University. Access to this file is available from: http://eprints.jcu.edu.au/17434 CHAPTER 1. INTRODUCTION AND AIMS OF STUDY Animal communities are typically comprised of a few common species and many rare ones (Krebs 2005). But why are some animal species rare and others common, and are there identifiable ecological and behavioural characteristics that predispose some animal species to rarity and others to commonness? These are increasingly important questions as continuing habitat destruction and over-exploitation significantly decrease populations of what were common species and threaten the existence of many rare species (Gaston and Fuller 2008). Rare species are generally considered more at risk because of the inability of small population sizes to recover from stochastic events or habitat loss (Hutchinson 1959; Caughley and Sinclair 1994; Davies et al. 2004). While many rare species are not currently at risk of imminent extinction, threatened species are typically rare. Consequently, conservation at the species level is primarily focussed on rare species with common species, often in the same taxonomic group, generally receiving less attention (Gaston and Fuller 2008). However, species that are currently common and widespread are also under pressure from human population growth and the predicted effects of climate change (Gaston and Fuller 2008). Moreover, studies have shown commonness in animal and plant populations is itself rare and that there are fewer common species than rare ones (Hutchinson 1957, 1959; Gaston and Fuller 2008).
    [Show full text]
  • Conservation Genetics of the Water Mouse, Xeromys Myoides Thomas, 1889
    This may be the author’s version of a work that was submitted/accepted for publication in the following source: Benfer, David, Baker, Andrew, Ball, Tina, Gynther, Ian, Janetzki, Heather, & Fuller, Susan (2014) Conservation genetics of the water mouse, Xeromys myoides Thomas, 1889. Australian Journal of Zoology, 62(5), pp. 382-392. This file was downloaded from: https://eprints.qut.edu.au/79908/ c Consult author(s) regarding copyright matters This work is covered by copyright. Unless the document is being made available under a Creative Commons Licence, you must assume that re-use is limited to personal use and that permission from the copyright owner must be obtained for all other uses. If the docu- ment is available under a Creative Commons License (or other specified license) then refer to the Licence for details of permitted re-use. It is a condition of access that users recog- nise and abide by the legal requirements associated with these rights. If you believe that this work infringes copyright please provide details by email to [email protected] Notice: Please note that this document may not be the Version of Record (i.e. published version) of the work. Author manuscript versions (as Sub- mitted for peer review or as Accepted for publication after peer review) can be identified by an absence of publisher branding and/or typeset appear- ance. If there is any doubt, please refer to the published source. https://doi.org/10.1071/ZO14019 Conservation genetics of the water mouse, Xeromys myoides Thomas, 1889 5 David BenferA, E, Andrew M.
    [Show full text]
  • Appendices Image on Reverse: Australian Old Endemic Rodent, Leggadina Lakedownensis
    Appendices Image on reverse: Australian Old Endemic rodent, Leggadina lakedownensis. Modified image from Strahan, 2002 Appendix 1: Nucleotide sequence of exon 6, intron 6 and exon 7 of Zp3 from New Guinean and Australasian murine rodents. Exons are indicated in bold. Polymorphic sites are highlighted in grey.
    [Show full text]
  • Chapter 8 Biodiversity and Biogeography of the Moss-Mice of New Guinea: a Taxonomic Revision of Pseudohydromys (Muridae: Murinae
    Chapter 8 Biodiversity and Biogeography of the Moss-Mice of New Guinea: A Taxonomic Revision of Pseudohydromys (Muridae: Murinae) KRISTOFER M. HELGEN1 AND LAUREN E. HELGEN2 ABSTRACT Morphological investigations involving nearly all available museum material representing New Guinea ‘‘moss-mice’’ (rodents traditionally classified in the genera Pseudohydromys, Neohydromys, Mayermys,andMicrohydromys) reveal outstanding undiagnosed taxic diversity (a minimum of 16 species, versus the eight species previously described) and allow for redefinition of generic boundaries among these little-studied rodents. Apart from Micro- hydromys Tate and Archbold, 1941 (comprising two species, as recently revised by Helgen et al., in press), herein we recognize two genera of New Guinea moss-mice: Pseudohydromys Ru¨mmler, 1934 (now incorporating Neohydromys Laurie, 1952, Mayermys Laurie and Hill, 1954, and ‘‘Microhydromys’’ musseri Flannery, 1989) and a newly described genus, Mirzamys. Species of Pseudohydromys are recorded from montane areas throughout New Guinea (elevations spanning 600 to at least 3800 meters), including the mountain ranges of the Central Cordillera, the Huon Peninsula, and the North Coastal ranges. We diagnose and review 12 species of Pseudohydromys, including six species described as new. The new genus Mirzamys is erected to accommodate two newly described species of small terrestrial rodents from middle and upper montane forests and subalpine grassland edges (1900–3450 m) in the mountains of central New Guinea. Together these two new species represent a distinctive hydromyin lineage that resembles the terrestrial New Guinea hydromyin genera Pseudohydromys and Paraleptomys in various traits. Ecological attributes of all recognized moss-mice taxa, both previously and newly described, are reviewed in light of all information currently available about their biology.
    [Show full text]
  • Sahul): Multilocus Systematics of the Old Endemic Rodents (Muroidea: Murinae)
    Available online at www.sciencedirect.com Molecular Phylogenetics and Evolution 47 (2008) 84–101 www.elsevier.com/locate/ympev Pliocene colonization and adaptive radiations in Australia and New Guinea (Sahul): Multilocus systematics of the old endemic rodents (Muroidea: Murinae) Kevin C. Rowe a,b,*, Michael L. Reno b, Daniel M. Richmond b, Ronald M. Adkins c, Scott J. Steppan b a Museum of Vertebrate Zoology, University of California, 3101 Valley Life Sciences Building, Berkeley, CA 94720-3160, USA b Department of Biological Science, The Florida State University, Tallahassee, FL 32306-1100, USA c Children’s Foundation Research Center and Center of Genomics and Bioinformatics, University of Tennessee Health Science Center, Memphis, TN 38103, USA Received 19 April 2007; revised 27 December 2007; accepted 3 January 2008 Available online 11 January 2008 Abstract The old endemic rodents of Australia and New Guinea (Sahul) represent one or more large adaptive radiations including novel mor- phological adaptations to aquatic, arboreal, hopping, and arid ecologies. Four tribes recognized among the Sahulian old endemics (Hydromini, Conilurini, Anisomyini, and Uromyini) reflect distinct biogeographic and ecomorphological hypotheses about diversifica- tion within the Old Endemics. We present the first character-based phylogeny of the Sahulian Old Endemic rodents with broad sampling, nested within a broader phylogeny of the Murinae. We estimated phylogenies from >2500 nucleotides of mtDNA sequence and >9500 nucleotides from six autosomal nuclear loci, for individual genes and for the full concatenated data using parsimony, likelihood, and Bayesian methods. Our results strongly supported monophyly of the group and its sister relationship to the Philippine old endemics of the Chrotomys division.
    [Show full text]
  • Zootaxa, Mammalia, Rodentia, Muridae
    Zootaxa 913: 1–20 (2005) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA 913 Copyright © 2005 Magnolia Press ISSN 1175-5334 (online edition) The amphibious murines of New Guinea (Rodentia, Muridae): the generic status of Baiyankamys and description of a new species of Hydromys KRISTOFER M. HELGEN1,2 1 School of Earth and Environmental Sciences, University of Adelaide, Adelaide, SA 5005 Australia; E-mail: [email protected] 2 South Australian Museum, North Terrace, Adelaide, SA 5000 Australia Abstract The amphibious murine rodents of New Guinea have traditionally been classified in three genera: Hydromys E. Geoffroy, 1804, Parahydromys Poche, 1906, and Crossomys Thomas, 1907. Species currently classified in Hydromys can be further divided into two cladistic groups: species distrib- uted in lowland habitats (below 2000 m) with glossy, dark brown dorsal pelage, and species restricted to upper montane rivers and lakes (generally above 2000 m) with soft, silvery grey dorsal pelage. These two groups differ not only in pelage traits and habitat association but also in cranio- dental and phallic anatomy. The generic-level name Baiyankamys Hinton, 1943, is resurrected for the latter cluster (which includes two species, B. shawmayeri of eastern New Guinea and B. habbema of west-central New Guinea). Additionally, a new species of Hydromys (H. ziegleri n. sp.) is described from the southern foothills of the Prince Alexander Range of Papua New Guinea. Mammalian zoogeography in the North Coast Ranges, an area of considerable geographically- restricted mammalian endemism, is reviewed. Key words: Hydromys, Baiyankamys, New Guinea, taxonomy, North Coast Ranges, amphibious rat Introduction The murine tribe Hydromyini comprises the amphibious “water-rats” and the terrestrial “moss-mice” of the Australo-Papuan region, a group of species currently classified in 10 genera (Ellerman 1941; Menzies and Dennis 1979; Flannery 1995), with greatest diversity in the mid-montane forests along the Central Dividing Ranges of New Guinea (Flannery 1995).
    [Show full text]
  • A New Genus of Rodent from Wallacea (Rodentia: Muridae: Murinae: Rattini), and Its Implication for Biogeography and Indo-Pacific Rattini Systematics
    bs_bs_banner Zoological Journal of the Linnean Society, 2013, 169, 408–447. With 10 figures A new genus of rodent from Wallacea (Rodentia: Muridae: Murinae: Rattini), and its implication for biogeography and Indo-Pacific Rattini systematics PIERRE-HENRI FABRE1*, MARIE PAGÈS2,3, GUY G. MUSSER4†, YULI S. FITRIANA5, JON FJELDSÅ1, ANDY JENNINGS6, KNUD A. JØNSSON1, JONATHAN KENNEDY1, JOHAN MICHAUX3, GONO SEMIADI5, NANANG SUPRIATNA5 and KRISTOFER M. HELGEN7 1Center for Macroecology, Evolution and Climate (CMEC, Department of Biology), Zoological Museum, University of Copenhagen, Universitetsparken 15, DK-2100 Copenhagen, Denmark 2Laboratoire de génétique des microorganismes, Université de Liège, 4000 Liège, Belgique 3INRA, UMR CBGP (INRA/IRD/Cirad/Montpellier SupAgro), Campus International de Baillarguet, CS 30016, 34988 Montferrier-sur-Lez Cedex, France 4Division of Vertebrate Zoology (Mammalogy), American Museum of Natural History, New York, NY 10024, USA 5Museum Zoologicum Bogoriense, Research Center For Biology, Indonesian Institute of Sciences (LIPI), Jl.Raya Jakarta-Bogor Km.46 Cibinong 16911 Indonesia 6Muséum National d’Histoire Naturelle, Département Systématique et Evolution CP 51, 57 Rue Cuvier, 75231 Paris, France 7National Museum of Natural History, Smithsonian. Institution, P.O. Box 37012, MRC 108, Washington, DC 20013-7012, USA Received 31 January 2013; revised 4 June 2013; accepted for publication 6 June 2013 We describe Halmaheramys bokimekot Fabre, Pagès, Musser, Fitriana, Semiadi & Helgen gen. et sp. nov.,a new genus and species of murine rodent from the North Moluccas, and study its phylogenetic placement using both molecular and morphological data. We generated a densely sampled mitochondrial and nuclear DNA data set that included most genera of Indo-Pacific Murinae, and used probabilistic methodologies to infer their phylogenetic relationships.
    [Show full text]
  • Xeromys Myoides from CITES Appendix I to CITES Appendix II, in Accordance with Provisions of Resolution Conf
    Original language: English CoP18 Prop. XXX CONVENTION ON INTERNATIONAL TRADE IN ENDANGERED SPECIES OF WILD FAUNA AND FLORA ____________________ Eighteenth meeting of the Conference of the Parties Colombo (Sri Lanka), 23 May – 3 June 2019 CONSIDERATION OF PROPOSALS FOR AMENDMENT OF APPENDICES I AND II A. Proposal To transfer Xeromys myoides from CITES Appendix I to CITES Appendix II, in accordance with provisions of Resolution Conf. 9.24 (Rev CoP 17), Annex 4 precautionary measures A1 and A2a(i). B. Proponent Australia * C. Supporting statement 1. Taxonomy 1.1 Class: Mammalia 1.2 Order: Rodentia 1.3 Family: Muridae 1.4 Genus, species or subspecies, including author and year: Xeromys myoides Thomas, 1889 1.5 Scientific synonyms: No 1.6 Common names: English: Water Mouse, False Water-Rat, Yirrkoo French: Faux rat d'eau Spanish: Rata bastarda de agua, Falsa rata de agua 1.7 Code numbers: - 2. Overview At the 29th meeting of the Animals Committee (AC29 Com 7 Rev) the Committee selected Xeromys myoides (the Water Mouse) for review between CoP17 and CoP19 in accordance with Resolution Conf. 14.8 (Rev. CoP17) Periodic Review of the Appendices. Parties were notified of the Animals Committee’s selection in Notification 2017/069. Australia’s review was provided to the 30th meeting of Animals Committee, and the Committee asked the Secretariat to invite the proposal to be submitted to the 18th meeting of the Conference of the Parties. * The geographical designations employed in this document do not imply the expression of any opinion whatsoever on the part of the CITES Secretariat (or the United Nations Environment Programme) concerning the legal status of any country, territory, or area, or concerning the delimitation of its frontiers or boundaries.
    [Show full text]
  • And Quartet-Based Approaches in Phylogenomic Data
    Copyedited by: YS MANUSCRIPT CATEGORY: Systematic Biology Syst. Biol. 70(5):997–1014, 2021 © The Author(s) 2021. Published by Oxford University Press, on behalf of the Society of Systematic Biologists. All rights reserved. For permissions, please email: [email protected] DOI:10.1093/sysbio/syab011 Advance Access publication February 22, 2021 Dissecting Incongruence between Concatenation- and Quartet-Based Approaches in Phylogenomic Data , ,∗ XING-XING SHEN1 2 ,JACOB L. STEENWYK3 AND ANTONIS ROKAS3 1State Key Laboratory of Rice Biology and Ministry of Agriculture Key Lab of Molecular Biology of Crop Pathogens and Insects, Department of Plant Protection, Zhejiang University, 866 Yuhangtang Road, Hangzhou 310058, China; 2Institute of Insect Sciences, Department of Plant Protection, Zhejiang University, 866 Yuhangtang Road, Hangzhou 310058, China; and 3Department of Biological Sciences, Vanderbilt University, VU Station B #35-1634, Nashville, TN 37235, USA ∗ Correspondence to be sent to: State Key Laboratory of Rice Biology and Ministry of Agriculture Key Lab of Molecular Biology of Crop Pathogens and Insects, Zhejiang University, Hangzhou 310058, China; Downloaded from https://academic.oup.com/sysbio/article/70/5/997/6146422 by Vanderbilt University, Antonis Rokas on 28 August 2021 E-mail: [email protected] Received 8 January 2020; reviews returned 10 February 2021; accepted 17 February 2021 Associate Editor: Jeremy Brown Abstract.—Topological conflict or incongruence is widespread in phylogenomic data. Concatenation- and
    [Show full text]