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Molecular Analysis and Phylogeography of Neotropical Amphibians
Molecular analysis and Phylogeography of Neotropical Amphibians Von der Fakultät für Lebenswissenschaften der Technischen Universität Carolo-Wilhelmina zu Braunschweig zur Erlangung des Grades eines Doktors der Naturwissenschaften (Dr. rer. nat.) genehmigte D i s s e r t a t i o n von Marcelo Coelho Miguel Gehara aus Juiz de Fora - MG, Brasilien 1. Referentin oder Referent: Professor Dr. Miguel Vences 2. Referentin oder Referent: Professor Dr. Michael Veith eingereicht am: 01.10.2012 mündliche Prüfung (Disputation) am: 25.01.2013 Drukjahr 2013 2 Vorveröffentlichungen der Dissertation Teilergebnisse aus dieser Arbeit wurden mit Genehmigung der Fakultät für Lebenswissenschaften, vertreten durch den Mentor der Arbeit, in folgenden Beiträgen vorab veröffentlicht: Publikationen Keine Tagungsbeiträge Canedo, C; GEHARA, M ; Vences, M; HADDAD, CFB Molecular and acoustic analyses of Ischnocnema guentheri species complex (Anura: Brachycephalidae). In: IX Congresso Latinoamericano de Herpetologia, 2011 . Resumos do IX Congresso Latinoamericano de Herpetologia, 2011, Curitiba, Brazil (oral presentation) GEHARA, M ; Canedo, C; Haddad, C; Vences, M Molecular analysis of Ischnocnema guentheri highlights a complex of cryptic species. In: XI Congreso Luso-Espanol / XV Congreso Espanol de Herpetología. 2010 . Sevilla, Spain. (oral presentation) 3 When the mind is thinking it is talking to itself Plato 4 Table of contents I. Acknowledgments ............................................................................................................................... -
Contributions to the Natural History and Distribution of Dasypeltis
ZOBODAT - www.zobodat.at Zoologisch-Botanische Datenbank/Zoological-Botanical Database Digitale Literatur/Digital Literature Zeitschrift/Journal: Herpetozoa Jahr/Year: 2017 Band/Volume: 30_1_2 Autor(en)/Author(s): Jimenez-Robles Octavio, Leon Raul, Soto Cardenas Manuel, Rebollo Baudilio, Martinez Gabriel Artikel/Article: Contributions to the natural history and distribution of Dasypeltis sahelensis TRAPE & MANÉ, 2006, in Morocco 80-86 All_Short_Notes_(Seiten 59-112):SHORT_NOTE.qxd 07.08.2017 19:05 Seite 22 80 SHORT NOTE HERPETOZOA 30 (1/2) Wien, 30. Juli 2017 SHORT NOTE Ministry of Enviroment), pp. 14, 214. BARAN , İ. & quences.- Molecular Ecology, Oxford; 14: 2433-2443. IlgAZ , Ç. & A vcI , A. & K uMluTAş , Y. & OlguN , K. ScHREIBER , E. (1912): Herpetologia Europaea. Eine (2012): Türkiye amfibi ve sürüngenleri [Amphibians systematische Bearbeitung der Amphibien und and reptiles of Turkey]. Ankara (TÜBİTAK Popüler Reptilien welche bisher in Europa aufgefunden sind. Bilim Kitapları), pp. 208. BARAN , İ. & Y IlMAZ , İ. & 2nd edition. Jena (gustav Fischer), pp. X, 960. KETE , R. & D uR Muş , H. (1992) : Batı ve orta Karadeniz SINDAcO , R. & J EREMčENKO , v. K. (2008): The reptiles Bölgesinin herpetofaunası.- Turkish Journal of Zoology, of the western Palearctic. 1. Annotated checklist and Ankara; 16: 275-288. BAşOğlu , M. & B ARAN , İ. distributional atlas of the turtles, crocodiles, amphis - (1977): Türkiye sürüngenleri. Kısım I. Kaplumbağa ve baenians and lizards of Europe, North Africa, Middle kertenkeleler.- Ege Üniversitesi Fen Fakültesi Kitaplar East and central Asia.latina (Edizioni Belvedere), pp. Serisi, İzmir; 76: vI, 272. BERgMANN , J. & N ORSTRöM , 579. SINDAcO , R. & v ENcHI , A. & c ARPANETO , g. M. M. (1990): Neues über Podarcis taurica (PAllAS , 1814) & B OlOgNA , M. -
The Promise of Next-Generation Taxonomy
Megataxa 001 (1): 035–038 ISSN 2703-3082 (print edition) https://www.mapress.com/j/mt/ MEGATAXA Copyright © 2020 Magnolia Press Correspondence ISSN 2703-3090 (online edition) https://doi.org/10.11646/megataxa.1.1.6 The promise of next-generation taxonomy MIGUEL VENCES Zoological Institute, Technische Universität Braunschweig, Mendelssohnstr. 4, 38106 Braunschweig, Germany �[email protected]; https://orcid.org/0000-0003-0747-0817 Documenting, naming and classifying the diversity and concepts. We should meet three main challenges, of life on Earth provides baseline information on the using new technological developments without throwing biosphere, which is crucially important to understand and the well-tried and successful foundations of Linnaean mitigate the global changes of the Anthropocene. Since nomenclature overboard. Linnaeus, taxonomists have named about 1.8 million species (Roskov et al. 2019) and continue doing so at 1. Fully embrace cybertaxonomy, machine learning a rate of about 15,000–20,000 species per year (IISE and DNA taxonomy to ease, not burden the workflow 2011). Natural history collections—museums, herbaria, of taxonomists. culture collections and others—hold billions of collection specimens (Brooke 2000) and have teamed up to Computer power and especially, DNA sequencing capacity assemble a cybertaxonomic infrastructure that mobilizes increases faster than exponentially (e.g., Rupp 2018) metadata and images of voucher specimens, now even and new technologies offer unprecedented opportunities at the scale of digitizing entire collections of millions for classifying specimens based on molecular evidence of insect or herbaria vouchers in automated imaging or image analysis. Yet, the vast majority of species lines (e.g., Tegelberg et al. -
Journal of the East Africa Natural History Society and National Museum
JOURNAL OF THE EAST AFRICA NATURAL HISTORY SOCIETY AND NATIONAL MUSEUM 15 October, 1978 Vol. 31 No. 167 A CHECKLIST OF mE SNAKES OF KENYA Stephen Spawls 35 WQodland Rise, Muswell Hill, London NIO, England ABSTRACT Loveridge (1957) lists 161 species and subspecies of snake from East Mrica. Eighty-nine of these belonging to some 41 genera were recorded from Kenya. The new list contains some 106 forms of 46 genera. - Three full species have been deleted from Loveridge's original checklist. Typhlops b. blanfordii has been synonymised with Typhlops I. lineolatus, Typhlops kaimosae has been synonymised with Typhlops angolensis (Roux-Esteve 1974) and Co/uber citeroii has been synonymised with Meizodon semiornatus (Lanza 1963). Of the 20 forms added to the list, 12 are forms collected for the first time in Kenya but occurring outside its political boundaries and one, Atheris desaixi is a new species, the holotype and paratypes being collected within Kenya. There has also been a large number of changes amongst the 89 original species as a result of revisionary systematic studies. This accounts for the other additions to the list. INTRODUCTION The most recent checklist dealing with the snakes of Kenya is Loveridge (1957). Since that date there has been a significant number of developments in the Kenyan herpetological field. This paper intends to update the nomenclature in the part of the checklist that concerns the snakes of Kenya and to extend the list to include all the species now known to occur within the political boundaries of Kenya. It also provides the range of each species within Kenya with specific locality records . -
Sudan Snakes
NOTES ON SUDAN SNAKES A GUIDE TO THE SPECIES REPRESENTED IN THE COLLECTION IN THE NATURAL HISTORY MUSEUM KHARTOUM BY N. L. CORKILL, M.D. Sudan Medical Service. SUDAN GOVERNMENT MUSEUM (NATURAL HISTORY) PUBLICATION No. 3 AUGUST, 1935 PRICE - - - P:T. 10(2/-). NOTES ON SUDAN SNAKES A GUIDE TO THE SPECIES REPRESENTED IN THE COLLECTION IN THE NATURAL HISTORY MUSEUM KHARTOUM BY N. L. GORKILL, M.D. Sudan Medical Service. SUDAN GOVERNMENT MUSEUM (NATURAL HISTORY) PUBLICATION No. 3 AUGUST, 1935 PRICE - - - P.T. 10(2/-). PRINTED BY M*CORQUODALE & CO. J CONTENTS. PAGE Foreword ... ... ... ... ... ... ••• ••• 4 Preface ... 5 Introduction... ... ... ... ... ... ... ... 6 Systematic Index ... ... ... ... ... ... ... 9 Family Typhlopidge, the Blind Snakes 11 Family Leptotyphlopidse, the Earth Snakes ... ... ... n Family Boidae, the Boas and Pythons ... ... ... ... 12 Family Colubridae, the Colubrids 14 (a) Series Aglypha, the Fangless Colubrids ... ... 14 (b) Series Opisthoglypha, the Back-fanged Colubrids ... 19 Family Elapidae, the Cobras 23 Family Viperidas, the Vipers ... ... ... ... ... 26 Key to the Identification of Sudanese Thanat ophidians ... 31 Snake Bite in the Sudan 33 First Aid and Treatment of Snake Bite 34 Index to Snake Names :—• (a) Scientific ... ... ... ... ... ... ... 36 (b) Popular English 37 (c) Vernacular Sudanese 38 Appendix I. List of additional Sudanese Species ... ... 39 Appendix II. Instructions for Collectors 40 3 FOREWORD. HE Sudan Government collection of snakes was first started in 1920, and by 1930 contained 220 specimens. In the latter year T Mr. N. L. Corkill of the Sudan Medical Service, who had recently completed a survey of snakes and snake bite in Iraq, undertook to classify all specimens in the collection and subsequent additions thereto. -
Taxonomy and Geographic Distribution of Malagasy Frogs of the Gephyromantis Asper Clade, with Description of a New Subgenus
SALAMANDRA 53(1) Taxonomy77–98 and15 Februarydistribution 2017 of MalagasyISSN 0036–3375frogs of the Gephyromantis asper clade Taxonomy and geographic distribution of Malagasy frogs of the Gephyromantis asper clade, with description of a new subgenus and revalidation of Gephyromantis ceratophrys Miguel Vences1, Jörn Köhler2, Maciej Pabijan3, Molly C. Bletz1, Philip-Sebastian Gehring1,4, Oliver Hawlitschek5,6, Andolalao Rakotoarison1, Fanomezana M. Ratsoavina7, Franco Andreone8, Angelica Crottini9 & Frank Glaw5 1) Division of Evolutionary Biology, Zoological Institute, Technical University of Braunschweig, Mendelssohnstr. 4, 38106 Braunschweig, Germany 2) Hessisches Landesmuseum Darmstadt, Friedensplatz 1, 64283 Darmstadt, Germany 3) Department of Comparative Anatomy, Institute of Zoology, Jagiellonian University, ul. Gronostajowa 9, 30–87, Kraków, Poland 4) Faculty of Biology / Biologiedidaktik, University Bielefeld, Universitätsstr. 25, 33615 Bielefeld, Germany 5) Zoologische Staatssammlung München (ZSM-SNSB), Münchhausenstr. 21, 81247 München, Germany 6) Institute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Passeig Marítim de la Barceloneta 37–49, 08003 Barcelona, Spain 7) Mention Zoologie et Biodiversité Animale, Faculté des Sciences, Université d’Antananarivo, BP 906, Antananarivo, 101 Madagascar 8) Museo Regionale di Scienze Naturali, Via G. Giolitti, 36, 10123 Torino, Italy 9) CIBIO, Research Centre in Biodiversity and Genetic Resources, InBIO, Universidade do Porto, Campus Agrário de Vairão, Rua Padre Armando Quintas, Nº 7, 4485-661 Vairão, Portugal Corresponding author: Miguel Vences, e-mail: [email protected] Manuscript received: 17 April 2016 Accepted: 31 May 2016 by Stefan Lötters Abstract. We integrate molecular, bioacoustic and morphological data to provide a systematic revision of the frogs classi- fied in the Gephyromantis asper clade (Anura: Mantellidae), endemic to Madagascar. Based on concordant differentiation in a mitochondrial and a nuclear gene (16S rRNA and Rag1) we distinguish six different species in this clade: G. -
Snake Communities Worldwide
Web Ecology 6: 44–58. Testing hypotheses on the ecological patterns of rarity using a novel model of study: snake communities worldwide L. Luiselli Luiselli, L. 2006. Testing hypotheses on the ecological patterns of rarity using a novel model of study: snake communities worldwide. – Web Ecol. 6: 44–58. The theoretical and empirical causes and consequences of rarity are of central impor- tance for both ecological theory and conservation. It is not surprising that studies of the biology of rarity have grown tremendously during the past two decades, with particular emphasis on patterns observed in insects, birds, mammals, and plants. I analyse the patterns of the biology of rarity by using a novel model system: snake communities worldwide. I also test some of the main hypotheses that have been proposed to explain and predict rarity in species. I use two operational definitions for rarity in snakes: Rare species (RAR) are those that accounted for 1% to 2% of the total number of individuals captured within a given community; Very rare species (VER) account for ≤ 1% of individuals captured. I analyse each community by sample size, species richness, conti- nent, climatic region, habitat and ecological characteristics of the RAR and VER spe- cies. Positive correlations between total species number and the fraction of RAR and VER species and between sample size and rare species in general were found. As shown in previous insect studies, there is a clear trend for the percentage of RAR and VER snake species to increase in species-rich, tropical African and South American commu- nities. This study also shows that rare species are particularly common in the tropics, although habitat type did not influence the frequency of RAR and VER species. -
Herpetological Survey of Cangandala National Park, with a Synoptic List of the Amphibians and Reptiles of Malanje Province, Central Angola
408 ARTICLES ———, M.A. BANGOURA, AND W. BÖHME. 2004. The amphibians of the frogs: vocal sac glands of reed frogs (Anura: Hyperoliidae) contain south-eastern Republic of Guinea (Amphibia: Gymnophiona, An- species-specific chemical cocktails. Biol. J. Linn. Soc. 110:828–838. ura). Herpetozoa 17:99–118. ———, P. M. MAIER, W. HÖDL, AND D. PREININGER. 2018. Multimodal sig- ———, K. P. LAMPERT, AND K. E. LINSENMAIR. 2006. Reproductive biol- nal testing reveals gestural tapping behavior in spotted reed frogs. ogy of the West African savannah frog Hyperolius nasutus Günther, Herpetologica 74:127–134. 1864. Herpetozoa 19:3–12. TELFORD, S. R. 1985. Mechanisms of evolution and inter-male spacing SCHICK, S., M. VEITH, AND S. LÖTTERS. 2005. Distribution patterns of amphib- in the painted reedfrog (Hyperolius marmoratus). Anim. Behav. ians from the Kakamega forest, Kenya. Afr. J. Herpetol. 54:185–190. 33:1353–1361. SCHIØTZ A. 1967. The treefrogs (Rhacophoridae) of West Africa. Spolia ———, AND M. L. DYSON. 1988. Some determinants of the mating sys- Zoologica Musei Hauniensis 25:1–346. tem in a population of painted reed frogs (Hyperolius marmora- ———. 1999. Treefrogs of Africa. Edition Chimaira, Frankfurt, Ger- tus). Behaviour 106:265–278. many. 350 pp. ———, ———, AND N. I. PASSMORE. 1989. Mate choice occurs only in SCHMITZ, A., O. EUSKIRCHEN, AND W. BÖHME. 1999. Zur Herpetofauna small choruses of painted reed frogs Hyperolius marmoratus. Bio- einer montanen Regenwaldregion in SW-Kamerun (Mt. Kupe und acoustics 2:47–53. Bakossi-Bergland). I. Einleitung, Bufonidae, und Hyperoliidae. ———, AND N. I. PASSMORE. 1981. Selective phonotaxis of four sympat- Herpetofauna (Weinstadt) 21(121):5–17. -
Reconciling Molecular Phylogeny, Morphological Divergence and Classification of Madagascan Narrow-Mouthed Frogs (Amphibia: Micro
Molecular Phylogenetics and Evolution 100 (2016) 372–381 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Reconciling molecular phylogeny, morphological divergence and classification of Madagascan narrow-mouthed frogs (Amphibia: Microhylidae) Mark D. Scherz a, Miguel Vences b, Andolalao Rakotoarison b, Franco Andreone c, Jörn Köhler d, ⇑ Frank Glaw a, Angelica Crottini e, a Zoologische Staatssammlung München (ZSM-SNSB), Münchhausenstr. 21, 81247 München, Germany b Zoologisches Institut, Technische Universität Braunschweig, Mendelssohnstraße 4, 38106 Braunschweig, Germany c Museo Regionale di Scienze Naturali, Via G. Giolitti, 36, 10123 Torino, Italy d Hessisches Landesmuseum Darmstadt, Friedensplatz 1, 64283 Darmstadt, Germany e CIBIO, Research Centre in Biodiversity and Genetic Resources, InBIO, Universidade do Porto, Campus Agrário de Vairão, Rua Padre Armando Quintas, N° 7, 4485-661 Vairão, Portugal article info abstract Article history: A recent study clarified several aspects of microhylid phylogeny by combining DNA sequences from Received 19 November 2015 Sanger sequencing and anchored phylogenomics, although numerous aspects of tree topology proved Revised 11 April 2016 highly susceptible to data partition and chosen model. Although the phylogenetic results of the study Accepted 12 April 2016 were in conflict with previous publications, the authors made several changes to the taxonomy of Available online 13 April 2016 Madagascar’s cophyline microhylids. We re-analyzed part of their data together with our own molecular and morphological data. Based on a supermatrix of 11 loci, we propose a new phylogeny of the Keywords: Cophylinae, and discuss it in the context of a newly generated osteological dataset. We found several Cophylinae sample misidentifications, partially explaining their deviant results, and propose to resurrect the genera Anilany gen. -
Echis Carinatus") : Epidemiological Studies in Nigeria and a Review of the World Literature
The importance of bites by the saw-scaled or carpet viper ("Echis carinatus") : epidemiological studies in Nigeria and a review of the world literature Autor(en): Warrell, David A. / Arnett, Charles Objekttyp: Article Zeitschrift: Acta Tropica Band (Jahr): 33 (1976) Heft 4 PDF erstellt am: 05.10.2021 Persistenter Link: http://doi.org/10.5169/seals-312237 Nutzungsbedingungen Die ETH-Bibliothek ist Anbieterin der digitalisierten Zeitschriften. Sie besitzt keine Urheberrechte an den Inhalten der Zeitschriften. Die Rechte liegen in der Regel bei den Herausgebern. Die auf der Plattform e-periodica veröffentlichten Dokumente stehen für nicht-kommerzielle Zwecke in Lehre und Forschung sowie für die private Nutzung frei zur Verfügung. Einzelne Dateien oder Ausdrucke aus diesem Angebot können zusammen mit diesen Nutzungsbedingungen und den korrekten Herkunftsbezeichnungen weitergegeben werden. Das Veröffentlichen von Bildern in Print- und Online-Publikationen ist nur mit vorheriger Genehmigung der Rechteinhaber erlaubt. Die systematische Speicherung von Teilen des elektronischen Angebots auf anderen Servern bedarf ebenfalls des schriftlichen Einverständnisses der Rechteinhaber. Haftungsausschluss Alle Angaben erfolgen ohne Gewähr für Vollständigkeit oder Richtigkeit. Es wird keine Haftung übernommen für Schäden durch die Verwendung von Informationen aus diesem Online-Angebot oder durch das Fehlen von Informationen. Dies gilt auch für Inhalte Dritter, die über dieses Angebot zugänglich sind. Ein Dienst der ETH-Bibliothek ETH Zürich, Rämistrasse 101, 8092 Zürich, Schweiz, www.library.ethz.ch http://www.e-periodica.ch The Importance of Bites by the Saw-Scaled or Carpet Viper (Echis carinatus): Epidemiological Studies in Nigeria and a Review of the World Literature* David A. Warrell1 and Charles Arnett2 Abstract The incidence of Echis carinatus (saw-scaled or carpet viper) bite and its mortality have been investigated in the Nigerian savanna region. -
Echis Carinatus Complex Is Problematic Due to the Existence of Climatic Clines Affecting the Number of Ventral Scales (Cherlin, 1981)
Butll. Soc. Cat. Herp., 18 (2009) 55 Biogeography of the White-Bellied Carpet Viper Echis leucogaster Roman, 1972 in Morocco, a study combining mitochondrial DNA data and ecological niche modeling D. Escoriza1, M. Metallinou2, D. Donaire-Barroso3, F. Amat4 and S. Carranza2 1Institut d'Ecologia Aquàtica, Universitat de Girona, 17071 Girona, Catalonia, Spain; [email protected] 2Institute of Evolutionary Biology (CSIC-UPF), Passeig Marítim de la Barceloneta, 37-49, 08003 Barcelona, Spain. [email protected]; [email protected] 3Avenida Mar Egeo, 7; Jerez de la Frontera 11407. [email protected] 4Museu de Ciencies Naturals de Granollers, Àrea d‟Herpetologia, c/Francesc Macià 51, E-08400 Granollers, Spain. [email protected] Key words: biogeographic patterns; saharan discontinuity; subtropical snakes. Paraules clau: discontinuitat sahariana; patrons biogeogràfics; serps subtropicals. Abstract: In northwest Africa some species from Sahelian origin appear with relict populations and apparently isolated by the extreme aridity of the Sahara desert. However very tolerant to aridity species could maintain continuous populations as might be the case for Echis leucogaster as indicated by results from genetic analysis and bioclimatic models. Resum: Al nord-oest d'àfrica apareixen un grup d'espècies d'origen sahelià en poblacions relictes i aparentment aïllades pel desert del Sàhara. No obstant això espècies molt tolerants a l‟aridesa podrien mantenir poblacions contínues, com podria ser el cas de Echis leucogaster segons indiquen els resultats de l'anàlisi genètica i els models bioclimàtics. The carpet or saw-scaled vipers of the genus Echis Merrem, 1820 are nocturnal, small (less than 90 cm), fairly stout snakes with a pear-shaped head covered with small scales, prominent eyes with vertical pupils set near the front of the head, and a thin neck. -
08:30 – 09:15 09:20 – 10:40 09:20 – 09:40 09:40 – 10:00 10:00 – 10:20
Tuesday, September 19th – Morning Plenary Lecture: Nikolay Poyarkov: Herpetofaunal diversity and endemism in Indochina: new 08:30 – 09:15 discoveries and biogeographic patterns Chair: Peter Kaufmann Room 1 Room 2 09:20 – 10:40 Session 1a: Population Genetics, Genetic Diversity Session 2a: Anuran Larvae Chair: Peter Mikuliček Chair: Arne Schulze 09:20 – 09:40 Valerija Zakšek, Grega Makovec, Peter Trontelj: Arne Schulze, Jörn Köhler, Stefan Lötters, Bruno Viertel & Secondary contact and limited hybridization of two distinct Michael Veith: Proteus anguinus lineages in the underground of the Hidden treasures: old museum tadpole collections in the Classical Karst light of modern scientific research 09:40 – 10:00 Peter Trontelj, Valerija Zakšek: Jan M. Kaczmarek, Mikołaj Kaczmarski, Janusz Kloskowski: A leap forward in the conservation genetics of Proteus A matter of proportion? Associational effects in tadpole- populations fish predator system 10:00 – 10:20 Alejandro Ibáñez, Molly Bletz, Miguel Vences, Sebastian Veronika Bókony, Zsanett Mikó, Ágnes M. Móricz, Dániel Steinfartz: Krüzselyi, Attila Hettyey: Gut microbial diversity is related to host genetic diversity Chronic exposure to a glyphosate-based herbicide makes but is not affected by starvation during an el Niño event in common toad (Bufo bufo) larvae more toxic Galápagos marine iguanas 10:20 – 10:40 Hisanori Okamiya, Hirotaka Sugawara, Tamotsu Kusano: Dóra Holly, Zsanett Mikó, Attila Hettyey: Loss of genetic diversity prevents adaptation at the margin Effects of a glyphosate-based