Increases in GABA Concentrations During Cerebral Ischaemia: A
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Monitoring Flavor Quality, Composition and Ripening Changes of Cheddar Cheese Using Fourier-Transform Infrared Spectroscopy
MONITORING FLAVOR QUALITY, COMPOSITION AND RIPENING CHANGES OF CHEDDAR CHEESE USING FOURIER-TRANSFORM INFRARED SPECTROSCOPY DISSERTATION Presented in Partial Fulfillment of the Requirements for Degree Doctor of Philosophy in the Graduate School of The Ohio State University By Anand S. Subramanian, M.S. ***** The Ohio State University 2009 Dissertation Committee: Approved by Dr. Luis E. Rodriguez-Saona, Advisor Dr. W. James Harper _______________________ Dr. V.M Balasubramaniam Advisor Dr. David B. Min Food Science and Nutrition Graduate Program Copyright by Anand Swaminathan Subramanian 2009 ABSTRACT Cheese flavor develops during the ripening process, when complex changes take place, leading to the formation of flavor compounds, including amino acids and organic acids. However, cheese ripening is not completely understood, making it difficult to produce cheese of uniform flavor quality. Currently, cheese characteristics are determined using sensory panels and chromatography, which are expensive, time- consuming, and laborious. The objective was to develop a rapid and cost-effective technique based on Fourier-transform infrared spectroscopy (FTIR) for simultaneous analysis of cheese composition and flavor quality and identify some of the biochemical changes occurring during ripening. Cheddar cheese samples were obtained from a cheese manufacturer, along with their composition, age and flavor quality data. The samples were powdered using liquid nitrogen and water-soluble compounds were extracted using water, chloroform and ethanol. The extracts were analyzed by reverse phase HPLC for 3 organic acids, GC-FID for 20 amino acids, and FTIR to collect the mid-infrared spectra (4000-700 cm-1). The collected spectra were correlated with flavor quality and composition data to develop classification models based on soft independent modeling of class analogy (SIMCA) and regression models based on partial least squares (PLS). -
Searching for Inhibitors of the Protein Arginine Methyl Transferases: Synthesis and Characterisation of Peptidomimetic Ligands
SEARCHING FOR INHIBITORS OF THE PROTEIN ARGININE METHYL TRANSFERASES: SYNTHESIS AND CHARACTERISATION OF PEPTIDOMIMETIC LIGANDS by ASTRID KNUHTSEN B. Sc., Aarhus University, 2009 M. Sc., Aarhus University, 2012 A DISSERTATION SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in THE FACULTY OF GRADUATE AND POSTDOCTORAL STUDIES (Pharmaceutical Sciences) THE UNIVERSITY OF BRITISH COLUMBIA (Vancouver) March 2016 © Astrid Knuhtsen, 2016 UNIVERSITY OF COPENH AGEN FACULTY OF HEALTH A ND MEDICAL SCIENCES PhD Thesis Astrid Knuhtsen Searching for Inhibitors of the Protein Arginine Methyl Transferases: Synthesis and Characterisation of Peptidomimetic Ligands December 2015 This thesis has been submitted to the Graduate School of The Faculty of Health and Medical Sciences, University of Copenhagen ii Thesis submission: 18th of December 2015 PhD defense: 11th of March 2016 Astrid Knuhtsen Department of Drug Design and Pharmacology Faculty of Health and Medical Sciences University of Copenhagen Universitetsparken 2 DK-2100 Copenhagen Denmark and Faculty of Pharmaceutical Sciences University of British Columbia 2405 Wesbrook Mall BC V6T 1Z3, Vancouver Canada Supervisors: Principal Supervisor: Associate Professor Jesper Langgaard Kristensen Department of Drug Design and Pharmacology, University of Copenhagen, Denmark Co-Supervisor: Associate Professor Daniel Sejer Pedersen Department of Drug Design and Pharmacology, University of Copenhagen, Denmark Co-Supervisor: Assistant Professor Adam Frankel Faculty of Pharmaceutical -
THE SPORULATION of PERONOSPORA TABAOINA ADAM. on TOBACCO LEAF DISKS by C
EFFECTS OF METABOLITES AND ANTlMETABOLITES ON THE SPORULATION OF PERONOSPORA TABAOINA ADAM. ON TOBACCO LEAF DISKS By C. J. SHEI'HERD* and M. MANDRYK* [Manuscript received ~arch 13, 1964] Summary . The effects of 148 metabolites and a~tinietabolites on the sporulation or" Peronospora tabacina Adam. on leaf disks of Nieotiand tubacum cv. Virginia Gold. have been determined. (1) Normal metabolites, with the exception of flavin adenine dinucleotide, had slight althoU:gh statistically significant effects on sporulation intensIty, which suggests that inhibition-nutrition phenomena play no part in the sporulation process of P. tabacina. (2) Seven uracil analogues had an inhibitory effect on sporulation, and the reversal of inhibition by uracil suggests the active involvement of this compound in the sporulation process. (3) Canavanine at a final concentrat.ion of 120 ftgjml showed complete inhibition of sporulation. The reversal of the canavanine inhibition of sporulation by arginine, citrulline, and ornithine suggests the involvement of arginine and the functioning of an ornithine cycle in the sporulating system. (4) White, instead of the normal blue, conidia were produced in the presence of a number of sUlphur-containing compounds. It is suggested that this phenomenon depends on the chelating properties of these compounds towards copper ions, with the subsequent inactivation of tyrosinase activity in the conidia. (5) Sporulation intensities of 68 X 10'-}53 X 104 conidia per sqnare centimetre of leaf area were observed during the present study. I. INTRODUCTION Clayton and Gaines (1933), Armstrong and Sumner (1935), and Dixon, McLean, and Wolf (1936) have shown that sporulation by Peronospora tabacina Adam. occurred only under conditions of high humidity. -
L-Norvaline Reverses Cognitive Decline and Synaptic Loss in a Murine Model of Alzheimer's Disease
bioRxiv preprint doi: https://doi.org/10.1101/354290; this version posted June 22, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. L-norvaline reverses cognitive decline and synaptic loss in a murine model of Alzheimer's disease. Baruh Polis1,2*, Kolluru D Srikanth2, Evan Elliott3, Hava Gil-Henn2 , Abraham O. Samson1 1 Drug Discovery Laboratory, The Azrieli Faculty of Medicine, Bar-Ilan University, Safed, 1311502, Israel. 2 Laboratory of Cell Migration and Invasion, The Azrieli Faculty of Medicine, Bar-Ilan University, Safed, 1311502, Israel. 3 Laboratory of Molecular and Behavioral Neuroscience, The Azrieli Faculty of Medicine, Bar-Ilan University, Safed, 1311502, Israel. * Correspondence should be addressed to: Baruh Polis, The Azrieli Faculty of Medicine, Bar-Ilan University, 8th Henrietta Szold Street, P.O. Box 1589, Safed 1311502, Israel. Phone: +972525654451, e-mail: [email protected] Keywords: Alzheimer’s disease, L-norvaline, L-arginine, arginase, memory, amyloid beta, ribosomal protein S6 kinase beta-1, mTOR. 1 bioRxiv preprint doi: https://doi.org/10.1101/354290; this version posted June 22, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Abstract The urea cycle plays a role in the pathogenesis of Alzheimer’s disease (AD). -
Effect of L-Norvaline on the Small Intestinal
Effect of L-norvaline on the small intestinal wall blood perfusion in a model of acute segmental mesenteric thrombosis Effecto de L-norvalina en la perfusión sanguínea de la pared del intestino delgado en el modelo de trombosis mesentérica segmentaria aguda Elena N. Bezhina; Sergey A. Alekhin; Elena B. Artyushkova; Angelika Y. Orlova; Lev N. Sernov; Tatyana A. Denisuk; Anna A. Peresypkina 1Belgorod State University, Pobedy St., 85, Belgorod, 308015, Russia *Corresponding author: Sergey A. Alekhin, Belgorod State University, Pobedy St., 85, Belgorod, 308015, Russia; e-mail: [email protected] Received/Recibido: 06/28/2020 Accepted/Aceptado: 07/15/2020 Published/Publicado: 09/09/2020 DOI: 10.5281/zenodo.4266263 Abstract Introduction. Ischemic and reperfusion injury play one of the before occlusion of segmental mesenteric arteries. The most important roles in the pathogenesis of many disorders. speed of microcirculation was measured using laser Doppler Especially severe changes in the wall of the small intestine flowmetry by Biopac systems MP100 with TSD144 probe and are observed in acute mesenteric thrombosis, and restora- Acknowledge 3.9.0 program. tion of blood flow to the ischemic tissue initiates a cascade of events that may lead to additional cell injury known as reper- Results. Arginase inhibitor, L-norvaline, in doses of 5, 10, 15, fusion injury. This reperfusion damage frequently exceeds the 20 mg/kg decreased the level of post-occlusive hyperemia original ischemic insult. L-norvaline, as an arginase inhibitor from 1846.25± 54.97 BPU to 1738.49± 42.67, 1622.91± 17.15, was shown to be potentially strategy to combat hepatic isch- and 1412,88 ± 38,08 BPU, respectively. -
Microdialysis of Dopamine Interpreted with Quantitative Model Incorporating Probe Implantation Trauma
Journal of Neurochemistry, 2003, 86, 932–946 doi:10.1046/j.1471-4159.2003.01904.x Microdialysis of dopamine interpreted with quantitative model incorporating probe implantation trauma Peter M. Bungay,* Paige Newton-Vinson, Wanda Isele,* Paul A. Garrisà and Joseph B. Justice, Jr *Division of Bioengineering & Physical Science, National Institutes of Health, DHHS, Bethesda, Maryland, USA Department of Chemistry, Emory University, Atlanta, Georgia, USA àDepartment of Biological Science, Illinois State University, Normal, Illinois, USA Abstract identified by histology and proposed to distort measurements Although microdialysis is widely used to sample endogenous of extracellular DA levels by the no-net-flux method. To and exogenous substances in vivo, interpretation of the address this issue, an existing quantitative mathematical results obtained by this technique remains controversial. The model for microdialysis was modified to incorporate a trau- goal of the present study was to examine recent criticism of matized tissue layer interposed between the probe and sur- microdialysis in the specific case of dopamine (DA) meas- rounding normal tissue. The tissue layers are hypothesized to urements in the brain extracellular microenvironment. The differ in their rates of neurotransmitter release and uptake. A apparent steady-state basal extracellular concentration and post-implantation traumatized layer with reduced uptake and extraction fraction of DA were determined in anesthetized rat no release can reconcile the discrepancy between DA uptake striatum by the concentration difference (no-net-flux) micro- measured by microdialysis and voltammetry. The model pre- dialysis technique. A rate constant for extracellular clearance dicts that this trauma layer would cause the DA extraction of DA calculated from the extraction fraction was smaller than fraction obtained from microdialysis in vivo calibration tech- the previously determined estimate by fast-scan cyclic vol- niques, such as no-net-flux, to differ from the DA relative tammetry for cellular uptake of DA. -
Enzymatic Aminoacylation of Trna with Unnatural Amino Acids
Enzymatic aminoacylation of tRNA with unnatural amino acids Matthew C. T. Hartman, Kristopher Josephson, and Jack W. Szostak* Department of Molecular Biology and Center for Computational and Integrative Biology, Simches Research Center, Massachusetts General Hospital, 185 Cambridge Street, Boston, MA 02114 Edited by Peter G. Schultz, The Scripps Research Institute, La Jolla, CA, and approved January 24, 2006 (received for review October 21, 2005) The biochemical flexibility of the cellular translation apparatus applicable to screening large numbers of unnatural amino acids. offers, in principle, a simple route to the synthesis of drug-like The commonly used ATP-PPi exchange assay, although very modified peptides and novel biopolymers. However, only Ϸ75 sensitive, does not actually measure the formation of the AA- unnatural building blocks are known to be fully compatible with tRNA product (13). A powerful assay developed by Wolfson and enzymatic tRNA acylation and subsequent ribosomal synthesis of Uhlenbeck (14) allows the observation of AA-tRNA synthesis modified peptides. Although the translation system can reject even with unnatural amino acids through the use of tRNA which substrate analogs at several steps along the pathway to peptide is 32P-labeled at the terminal C-p-A phosphodiester linkage (4, synthesis, much of the specificity resides at the level of the 15). Because the assay is based on the separation of AMP and aminoacyl-tRNA synthetase (AARS) enzymes that are responsible esterified AA-AMP by TLC, each amino acid analog must be for charging tRNAs with amino acids. We have developed an AARS tested in a separate assay mixture; moreover, this assay cannot assay based on mass spectrometry that can be used to rapidly generally distinguish between tRNA charged with the desired identify unnatural monomers that can be enzymatically charged unnatural amino acid or with contaminating natural amino acid. -
Analysis of Amino Acids by HPLC
Analysis of Amino Acids by HPLC Rita Steed Agilent Technologies, Inc. 800-227-9770 opt 3/opt3/opt 2 Amino Acid Analysis - Agilent Restricted Page 1 June 24, 2010 Outline • Amino Acids – Structure, Chemistry • Separation Considerations • Challenges • Instrumentation • Derivatization – OPA, FMOC • Overview of Separations • Examples Amino Acid Analysis - Agilent Restricted Page 2 June 24, 2010 Amino Acids – Structure, Chemistry CH3 Alanine (()Ala) Glutamic Acid (()Glu) Amino Acid Analysis - Agilent Restricted Page 3 June 24, 2010 Amino Acids – Zwitterionic Amino Acid Analysis - Agilent Restricted Page 4 June 24, 2010 Separation Considerations • Zwitterions - poor solubility near iso- …electric point • Most have poor UV absorbance • Derivatization – OPA, FMOC •Reduce polarity – increases retention in reversed-phase chromatoggpyraphy •Improve sensitivity – UV, Fluorescence • Detector; DAD, FLD, MS, ELSD Amino Acid Analysis - Agilent Restricted Page 5 June 24, 2010 Ortho Phthalaldehyde (OPA) and Fluorenylmethoxy chloroformate (FMOC) Reactions with Amines OPA O SR’ R’SH H NR +RNH2 H Room Temperature O Fluorescence: Ex 340nm, Em 450nm Non-fluorescent DAD: 338 , 10nm; Ref . 390 , 20nm Does not absorb at 338nm FMOC RR’NH - HCl + or Room Temperature RNH2 NRR’ or NHR Fluorescence: Ex 260nm, Em 325nm Fluorescent DAD: 262, 16nm; Ref. 324,8nm Absorbs at 262nm and Fluorescences at 324nm Group/Presentation Title Agilent Restricted Month ##, 200X Names and Order of Elution for OPA and FMOC Derivatives of Amino Acids Peak # AA Name AA Abbreviation Derivative Type Peak # AA Name AA Abbreviation Derivative Type Group/Presentation Title Agilent Restricted Month ##, 200X Agilent AAA Methods - They’ve Evolved • Automated Amino Acid Analysis – AminoQuant I & II (1987) •1090 •1100, Pub. -
Lack of Discrimination Against Non-Proteinogenic Amino Acid Norvaline by Elongation Factor Tu from Escherichia Coli †
CROATICA CHEMICA ACTA CCACAA, ISSN 0011-1643, e-ISSN 1334-417X Croat. Chem. Acta 86 (1) (2013) 73–82. http://dx.doi.org/10.5562/cca2173 Original Scientific Article Lack of Discrimination Against Non-proteinogenic Amino Acid Norvaline by Elongation Factor Tu from Escherichia coli † Nevena Cvetešić, Irena Akmačić, and Ita Gruić-Sovulj* Department of Chemistry, Faculty of Science, University of Zagreb, Horvatovac 102a, HR-10000 Zagreb, Croatia RECEIVED SEPTEMBER 30, 2012; REVISED DECEMBER 14, 2012; ACCEPTED JANUARY 14, 2013 Abstract. The GTP-bound form of elongation factor Tu (EF-Tu) brings aminoacylated tRNAs (aa-tRNA) to the A-site of the ribosome. EF-Tu binds all cognate elongator aa-tRNAs with highly similar affinities, and its weaker or tighter binding of misacylated tRNAs may discourage their participation in translation. Norvaline (Nva) is a non-proteinogenic amino acid that is activated and transferred to tRNALeu by leucyl- tRNA synthetase (LeuRS). No notable accumulation of Nva-tRNALeu has been observed in vitro, because of the efficient post-transfer hydrolytic editing activity of LeuRS. However, incorporation of norvaline in- to proteins in place of leucine does occur under certain conditions in vivo. Here we show that EF-Tu binds Nva-tRNALeu and Leu-tRNALeu with similar affinities, and that Nva-tRNALeu and Leu-tRNALeu dissociate from EF-Tu at comparable rates. The inability of EF-Tu to discriminate against norvaline may have driven evolution of highly efficient LeuRS editing as the main quality control mechanism against misincorporation of norvaline into proteins. (doi: 10.5562/cca2173) Keywords: EF-Tu, norvaline, non-proteinogenic amino acids, aminoacyl-tRNA synthetases, leucyl-tRNA synthetase, mistranslation INTRODUCTION fied amino acid.3–5 Thus, weak-binding amino acids are esterified to cognate tRNAs that bind EF-Tu tightly, Bacterial elongation factor Tu (EF-Tu) delivers while tight-binding amino acids are matched with elongator aminoacyl-tRNAs (aa-tRNA) to the ribosome, tRNAs that bind EF-Tu weakly. -
The Origin and Neuronal Function of in Vivo Nonsynaptic Glutamate
The Journal of Neuroscience, October 15, 2002, 22(20):9134–9141 The Origin and Neuronal Function of In Vivo Nonsynaptic Glutamate David A. Baker, Zheng-Xiong Xi, Hui Shen, Chad J. Swanson, and Peter W. Kalivas Department of Physiology and Neuroscience, Medical University of South Carolina, Charleston, South Carolina 29425 Basal extracellular glutamate sampled in vivo is present in Infusion of the mGluR2/3 antagonist (RS)-1-amino-5- micromolar concentrations in the extracellular space outside phosphonoindan-1-carboxylic acid (APICA) increased extracel- the synaptic cleft, and neither the origin nor the function of this lular glutamate levels, and previous blockade of the antiporter glutamate is known. This report reveals that blockade of gluta- prevented the APICA-induced rise in extracellular glutamate. mate release from the cystine–glutamate antiporter produced a This suggests that glutamate released from the antiporter is a significant decrease (60%) in extrasynaptic glutamate levels in source of endogenous tone on mGluR2/3. Blockade of the the rat striatum, whereas blockade of voltage-dependent Na ϩ antiporter also produced an increase in extracellular dopamine and Ca 2ϩ channels produced relatively minimal changes (0– that was reversed by infusing the mGluR2/3 agonist (2R,4R)-4- 30%). This indicates that the primary origin of in vivo extrasyn- aminopyrrolidine-2,4-dicarboxlylate, indicating that antiporter- aptic glutamate in the striatum arises from nonvesicular gluta- derived glutamate can modulate dopamine transmission via mate -
Arginase As a Potential Target in the Treatment of Alzheimer's Disease
Advances in Alzheimer’s Disease, 2018, 7, 119-140 http://www.scirp.org/journal/aad ISSN Online: 2169-2467 ISSN Print: 2169-2459 Arginase as a Potential Target in the Treatment of Alzheimer’s Disease Baruh Polis, Abraham O. Samson The Azrieli Faculty of Medicine, Bar-Ilan University, Safed, Israel How to cite this paper: Polis, B. and Abstract Samson, A.O. (2018) Arginase as a Poten- tial Target in the Treatment of Alzheimer’s Alzheimer’s disease (AD) is a slowly progressive, neurodegenerative disorder Disease. Advances in Alzheimer’s Disease, with an insidious onset that is characterized by severe decline in memory, 7, 119-140. thinking and reasoning skills. Advanced age is a prominent risk factor for AD https://doi.org/10.4236/aad.2018.74009 and other metabolic diseases, such as type II diabetes and atherosclerosis. Received: September 28, 2018 Their causal mechanisms are multifaceted and not fully understood. The pre- Accepted: November 19, 2018 cise pathophysiology of AD remains a mystery despite decades of intensive Published: November 22, 2018 investigation. Thus far, there is no truly successful AD therapy. Arginase is the central enzyme of the urea cycle. Recent studies have identified arginase Copyright © 2018 by authors and function in the brain and associated this enzyme with the development of Scientific Research Publishing Inc. This work is licensed under the Creative neurodegenerative diseases. Upregulation of arginase has been shown to con- Commons Attribution International tribute to endothelial dysfunction, ischemia-reperfusion, atherosclerosis, di- License (CC BY 4.0). abetes, and neurodegeneration. Other state-of-the-art discoveries of the pre- http://creativecommons.org/licenses/by/4.0/ cise molecular machinery of neurodegeneration have provided new directions Open Access for the rational development of innovative therapeutic strategies in the treat- ment of common neurodegenerative diseases. -
Regional Differences in Extracellular Dopamine and Serotonin Assessed by in Vivo Microdialysis in Mice Lacking Dopamine And/Or Serotonin Transporters
Neuropsychopharmacology (2004) 29, 1790–1799 & 2004 Nature Publishing Group All rights reserved 0893-133X/04 $30.00 www.neuropsychopharmacology.org Regional Differences in Extracellular Dopamine and Serotonin Assessed by In Vivo Microdialysis in Mice Lacking Dopamine and/or Serotonin Transporters 1 1 1 1 1 Hao-wei Shen , Yoko Hagino , Hideaki Kobayashi , Keiko Shinohara-Tanaka , Kazutaka Ikeda , 1 2 3 4 5 Hideko Yamamoto , Toshifumi Yamamoto , Klaus-Peter Lesch , Dennis L Murphy , F Scott Hall , 5 ,1,5,6 George R Uhl and Ichiro Sora* 1 2 Department of Molecular Psychiatry, Tokyo Institute of Psychiatry, Japan; Laboratory of Molecular Recognition, Graduate School of Integrated 3 4 Science, Yokohama City University, Japan; Department of Psychiatry and Psychotherapy, University of Wurzburg, Germany; Laboratory of Clinical Science, Intramural Research Program, National Institute of Mental Health, USA; 5Molecular Neurobiology Branch, Intramural Research Program, National Institute on Drug Abuse, USA; 6Division of Psychobiology, Department of Neuroscience, Tohoku University Graduate School of Medicine, Japan Cocaine conditioned place preference (CPP) is intact in dopamine transporter (DAT) knockout (KO) mice and enhanced in serotonin transporter (SERT) KO mice. However, cocaine CPP is eliminated in double-KO mice with no DAT and either no or one SERT gene copy. To help determine mechanisms underlying these effects, we now report examination of baselines and drug-induced changes of extracellular dopamine (DA ) and serotonin (5-HT ) levels in microdialysates from nucleus accumbens (NAc), caudate putamen ex ex (CPu), and prefrontal cortex (PFc) of wild-type, homozygous DAT- or SERT-KO and heterozygous or homozygous DAT/SERT double- KO mice, which are differentially rewarded by cocaine.