Hints at the Applicability of Microalgae and Cyanobacteria for the Biodegradation of Plastics
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The 2014 Golden Gate National Parks Bioblitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event
National Park Service U.S. Department of the Interior Natural Resource Stewardship and Science The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 ON THIS PAGE Photograph of BioBlitz participants conducting data entry into iNaturalist. Photograph courtesy of the National Park Service. ON THE COVER Photograph of BioBlitz participants collecting aquatic species data in the Presidio of San Francisco. Photograph courtesy of National Park Service. The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 Elizabeth Edson1, Michelle O’Herron1, Alison Forrestel2, Daniel George3 1Golden Gate Parks Conservancy Building 201 Fort Mason San Francisco, CA 94129 2National Park Service. Golden Gate National Recreation Area Fort Cronkhite, Bldg. 1061 Sausalito, CA 94965 3National Park Service. San Francisco Bay Area Network Inventory & Monitoring Program Manager Fort Cronkhite, Bldg. 1063 Sausalito, CA 94965 March 2016 U.S. Department of the Interior National Park Service Natural Resource Stewardship and Science Fort Collins, Colorado The National Park Service, Natural Resource Stewardship and Science office in Fort Collins, Colorado, publishes a range of reports that address natural resource topics. These reports are of interest and applicability to a broad audience in the National Park Service and others in natural resource management, including scientists, conservation and environmental constituencies, and the public. The Natural Resource Report Series is used to disseminate comprehensive information and analysis about natural resources and related topics concerning lands managed by the National Park Service. -
(WHO) Report on Microplastics in Drinking Water
Microplastics in drinking-water Microplastics in drinking-water ISBN 978-92-4-151619-8 © World Health Organization 2019 Some rights reserved. This work is available under the Creative Commons Attribution-NonCommercial-ShareAlike 3.0 IGO licence (CC BY-NC-SA 3.0 IGO; https://creativecommons.org/licenses/by-nc-sa/3.0/igo). Under the terms of this licence, you may copy, redistribute and adapt the work for non-commercial purposes, provided the work is appropriately cited, as indicated below. In any use of this work, there should be no suggestion that WHO endorses any specific organization, products or services. The use of the WHO logo is not permitted. If you adapt the work, then you must license your work under the same or equivalent Creative Commons licence. If you create a translation of this work, you should add the following disclaimer along with the suggested citation: “This translation was not created by the World Health Organization (WHO). WHO is not responsible for the content or accuracy of this translation. The original English edition shall be the binding and authentic edition”. Any mediation relating to disputes arising under the licence shall be conducted in accordance with the mediation rules of the World Intellectual Property Organization. Suggested citation. Microplastics in drinking-water. Geneva: World Health Organization; 2019. Licence: CC BY-NC-SA 3.0 IGO. Cataloguing-in-Publication (CIP) data. CIP data are available at http://apps.who.int/iris. Sales, rights and licensing. To purchase WHO publications, see http://apps.who.int/bookorders. To submit requests for commercial use and queries on rights and licensing, see http://www.who.int/about/licensing. -
Salmon Mortalities at Inver Bay and Mcswyne’S Bay Finfish Farms, County Donegal, Ireland, During 2003 ______
6$/0210257$/,7,(6$7,19(5%$<$1'0&6:<1(¶6%$< ),1),6+)$506&2817<'21(*$/,5(/$1''85,1* )HEUXDU\ 0V0DUJRW&URQLQ 'U&DUROLQH&XVDFN 0V)LRQD*HRJKHJDQ 'U'DYH-DFNVRQ 'U(YLQ0F*RYHUQ 'U7HUU\0F0DKRQ 'U)UDQFLV2¶%HLUQ 0U0LFKHiOÏ&LQQHLGH 0U-RH6LONH &KHPLVWU\6HFWLRQ0DULQH,QVWLWXWH*DOZD\ (G 3K\WRSODQNWRQ8QLW0DULQH,QVWLWXWH*DOZD\ )LVK+HDOWK8QLW0DULQH,QVWLWXWH'XEOLQ $TXDFXOWXUH8QLW0DULQH,QVWLWXWH*DOZD\ &KHPLVWU\6HFWLRQ0DULQH,QVWLWXWH*DOZD\ %LRWR[LQ8QLW0DULQH,QVWLWXWH'XEOLQ %HQWKLF0RQLWRULQJ8QLW0DULQH,QVWLWXWH*DOZD\ 0DULQH(QYLURQPHQW )RRG6DIHW\6HUYLFHV0DULQH,QVWLWXWH*DOZD\ %LRWR[LQ8QLW0DULQH,QVWLWXWH*DOZD\ ,66112 Salmon Mortalities at Inver Bay and McSwyne’s Bay Finfish farms, County Donegal, Ireland, during 2003 ________________________________________________________________________ 2 Marine, Environment and Health Series, No.15, 2004 ___________________________________________________________________________________ Page no. CHAPTER 1 INTRODUCTION 6 1.1 Summary 6 1.2 Background 6 1.3 Summary mortalities by farm 8 1.4 Pattern of mortality development 9 1.5 Phases of MI investigation 10 1.6 Alternative scenarios 11 CHAPTER 2 ENVIRONMENTAL CONDITIONS 12 2.1 Summary 12 2.2 Currents 12 2.3 Water column structure 17 2.4 Wind data 19 2.5 Temperatures recorded in Inver and McSwynes Bay during 2003 21 2.6 References 24 CHAPTER 3 FISH HEALTH AND FARM MANAGEMENT, 2003 25 3.1 Data sources and approach 25 3.2 Site visits and Veterinary investigations 25 3.3 Farm management 36 3.4 Feed 36 3.5 Cage analysis 37 3.6 Sea lice (counts and treatments) 37 3.7 Discussion -
Potential for and Distribution of Enzymatic Biodegradation of Polystyrene by Environmental Microorganisms
materials Communication Potential for and Distribution of Enzymatic Biodegradation of Polystyrene by Environmental Microorganisms Liyuan Hou and Erica L.-W. Majumder * Department of Chemistry, SUNY College of Environmental Science and Forestry, Syracuse, NY 13210, USA; [email protected] * Correspondence: [email protected] or [email protected]; Tel.: +1-3154706854 Abstract: Polystyrene (PS) is one of the main polymer types of plastic wastes and is known to be resistant to biodegradation, resulting in PS waste persistence in the environment. Although previous studies have reported that some microorganisms can degrade PS, enzymes and mechanisms of microorganism PS biodegradation are still unknown. In this study, we summarized microbial species that have been identified to degrade PS. By screening the available genome information of microorganisms that have been reported to degrade PS for enzymes with functional potential to depolymerize PS, we predicted target PS-degrading enzymes. We found that cytochrome P4500s, alkane hydroxylases and monooxygenases ranked as the top potential enzyme classes that can degrade PS since they can break C–C bonds. Ring-hydroxylating dioxygenases may be able to break the side-chain of PS and oxidize the aromatic ring compounds generated from the decomposition of PS. These target enzymes were distributed in Proteobacteria, Actinobacteria, Bacteroidetes, and Firmicutes, suggesting a broad potential for PS biodegradation in various earth environments and microbiomes. Our results provide insight into the enzymatic degradation of PS and suggestions for realizing the biodegradation of this recalcitrant plastic. Citation: Hou, L.; Majumder, E.L. Keywords: plastics; polystyrene biodegradation; enzymatic biodegradation; monooxygenase; alkane Potential for and Distribution of hydroxylase; cytochrome P450 Enzymatic Biodegradation of Polystyrene by Environmental Microorganisms. -
Response of Heterotrophic Stream Biofilm Communities to a Gradient of Resources
The following supplement accompanies the article Response of heterotrophic stream biofilm communities to a gradient of resources D. J. Van Horn1,*, R. L. Sinsabaugh1, C. D. Takacs-Vesbach1, K. R. Mitchell1,2, C. N. Dahm1 1Department of Biology, University of New Mexico, Albuquerque, New Mexico 87131, USA 2Present address: Department of Microbiology & Immunology, University of British Columbia Life Sciences Centre, Vancouver BC V6T 1Z3, Canada *Email: [email protected] Aquatic Microbial Ecology 64:149–161 (2011) Table S1. Representative sequences for each OTU, associated GenBank accession numbers, and taxonomic classifications with bootstrap values (in parentheses), generated in mothur using 14956 reference sequences from the SILVA data base Treatment Accession Sequence name SILVA taxonomy classification number Control JF695047 BF8FCONT18Fa04.b1 Bacteria(100);Proteobacteria(100);Gammaproteobacteria(100);Pseudomonadales(100);Pseudomonadaceae(100);Cellvibrio(100);unclassified; Control JF695049 BF8FCONT18Fa12.b1 Bacteria(100);Proteobacteria(100);Alphaproteobacteria(100);Rhizobiales(100);Methylocystaceae(100);uncultured(100);unclassified; Control JF695054 BF8FCONT18Fc01.b1 Bacteria(100);Planctomycetes(100);Planctomycetacia(100);Planctomycetales(100);Planctomycetaceae(100);Isosphaera(50);unclassified; Control JF695056 BF8FCONT18Fc04.b1 Bacteria(100);Proteobacteria(100);Gammaproteobacteria(100);Xanthomonadales(100);Xanthomonadaceae(100);uncultured(64);unclassified; Control JF695057 BF8FCONT18Fc06.b1 Bacteria(100);Proteobacteria(100);Betaproteobacteria(100);Burkholderiales(100);Comamonadaceae(100);Ideonella(54);unclassified; -
First Record of Navicula Pelagica (Bacillariophyta) in the South Atlantic Ocean: the Intriguing Occurrence of a Sea-Ice-Dwelling Species in a Tropical Estuary
First record of Navicula pelagica (Bacillariophyta) in the South Atlantic Ocean: the intriguing occurrence of a sea-ice-dwelling species in a tropical estuary HELEN MICHELLE DE JESUS AFFE1*, DIOGO SOUZA BEZERRA ROCHA2, MARIÂNGELA MENEZES3 & JOSÉ MARCOS DE CASTRO NUNES1 1 Laboratório de Algas Marinhas, Instituto de Biologia, Universidade Federal da Bahia. Rua Barão de Jeremoabo s/n, Ondina, Salvador, Bahia, 40170-115. Brazil 2 Instituto de Pesquisa Jardim Botânico do Rio de Janeiro. Rua Pacheco Leão, nº 915, Rio de Janeiro, Rio de Janeiro, 22460-030. Brazil 3 Laboratório de Ficologia, Departamento de Botânica, Museu Nacional, Universidade Federal do Rio de Janeiro. Quinta da Boa Vista s/n, São Cristovão, Rio de Janeiro, Rio de Janeiro, 20940040. Brazil * Corresponding author: [email protected] Abstract. Despite the wide distribution of species of the genus Navicula in the most diverse habitats around the globe, Navicula pelagica Cleve (Bacillariophyceae) is reported almost exclusively as one of the main components of the diatom biota of Arctic sea-ice. The present study is the first record of N. pelagica in the South Atlantic Ocean (Brazil) and demonstrates an ecological niche model of the species. The analyzed specimens were rectangular, with rounded angles in pleural view, the pervalvar axis measured 7.9-9.5μm and the apical axis 22-25μm, an evident central nucleus and two comma-shaped chloroplasts, one on each side of the nucleus, were observed. The specimens formed chains of 35 cells, on average, arranged in the typical pattern of rotation about the chain axis relative to their neighboring cell. The applied ecological niche model indicated that the Brazilian coast has low environmental suitability (~12%) for the development of N. -
Recent Advances in Biocatalysts Engineering for Polyethylene Terephthalate Plastic Waste Green Recycling
Environment International 145 (2020) 106144 Contents lists available at ScienceDirect Environment International journal homepage: www.elsevier.com/locate/envint Review article Recent advances in biocatalysts engineering for polyethylene terephthalate plastic waste green recycling Nadia A. Samak a,b,c,1, Yunpu Jia a,b,1, Moustafa M. Sharshar a,b, Tingzhen Mu a, Maohua Yang a, Sumit Peh a,b, Jianmin Xing a,b,* a CAS Key Laboratory of Green Process and Engineering & State Key Laboratory of Biochemical Engineering, Institute of Process Engineering, Chinese Academy of Sciences, Beijing 100190, PR China b College of Chemical Engineering, University of Chinese Academy of Sciences, 19 A Yuquan Road, Beijing 100049, PR China c Processes Design and Development Department, Egyptian Petroleum Research Institute, Nasr City, 11727 Cairo, Egypt ARTICLE INFO ABSTRACT Handling Editor: Guo-ping Sheng The massive waste of poly(ethylene terephthalate) (PET) that ends up in the landfills and oceans and needs hundreds of years for degradation has attracted global concern. The poor stability and productivity of the Keywords: available PET biocatalysts hinder their industrial applications. Active PET biocatalysts can provide a promising Plastic waste avenue for PET bioconversion and recycling. Therefore, there is an urgent need to develop new strategies that Poly(ethylene terephthalate) could enhance the stability, catalytic activity, solubility, productivity, and re-usability of these PET biocatalysts Recycling under harsh conditions such as high temperatures, pH, and salinity. This has raised great attention in using Biocatalysts ’ Bioengineering bioengineering strategies to improve PET biocatalysts robustness and catalytic behavior. Herein, historical and forecasting data of plastic production and disposal were critically reviewed. -
Alpine Soil Bacterial Community and Environmental Filters Bahar Shahnavaz
Alpine soil bacterial community and environmental filters Bahar Shahnavaz To cite this version: Bahar Shahnavaz. Alpine soil bacterial community and environmental filters. Other [q-bio.OT]. Université Joseph-Fourier - Grenoble I, 2009. English. tel-00515414 HAL Id: tel-00515414 https://tel.archives-ouvertes.fr/tel-00515414 Submitted on 6 Sep 2010 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. THÈSE Pour l’obtention du titre de l'Université Joseph-Fourier - Grenoble 1 École Doctorale : Chimie et Sciences du Vivant Spécialité : Biodiversité, Écologie, Environnement Communautés bactériennes de sols alpins et filtres environnementaux Par Bahar SHAHNAVAZ Soutenue devant jury le 25 Septembre 2009 Composition du jury Dr. Thierry HEULIN Rapporteur Dr. Christian JEANTHON Rapporteur Dr. Sylvie NAZARET Examinateur Dr. Jean MARTIN Examinateur Dr. Yves JOUANNEAU Président du jury Dr. Roberto GEREMIA Directeur de thèse Thèse préparée au sien du Laboratoire d’Ecologie Alpine (LECA, UMR UJF- CNRS 5553) THÈSE Pour l’obtention du titre de Docteur de l’Université de Grenoble École Doctorale : Chimie et Sciences du Vivant Spécialité : Biodiversité, Écologie, Environnement Communautés bactériennes de sols alpins et filtres environnementaux Bahar SHAHNAVAZ Directeur : Roberto GEREMIA Soutenue devant jury le 25 Septembre 2009 Composition du jury Dr. -
Characteristic Microbiomes Correlate with Polyphosphate Accumulation of Marine Sponges in South China Sea Areas
microorganisms Article Characteristic Microbiomes Correlate with Polyphosphate Accumulation of Marine Sponges in South China Sea Areas 1 1, 1 1 2, 1,3, Huilong Ou , Mingyu Li y, Shufei Wu , Linli Jia , Russell T. Hill * and Jing Zhao * 1 College of Ocean and Earth Science of Xiamen University, Xiamen 361005, China; [email protected] (H.O.); [email protected] (M.L.); [email protected] (S.W.); [email protected] (L.J.) 2 Institute of Marine and Environmental Technology, University of Maryland Center for Environmental Science, Baltimore, MD 21202, USA 3 Xiamen City Key Laboratory of Urban Sea Ecological Conservation and Restoration (USER), Xiamen University, Xiamen 361005, China * Correspondence: [email protected] (J.Z.); [email protected] (R.T.H.); Tel.: +86-592-288-0811 (J.Z.); Tel.: +(410)-234-8802 (R.T.H.) The author contributed equally to the work as co-first author. y Received: 24 September 2019; Accepted: 25 December 2019; Published: 30 December 2019 Abstract: Some sponges have been shown to accumulate abundant phosphorus in the form of polyphosphate (polyP) granules even in waters where phosphorus is present at low concentrations. But the polyP accumulation occurring in sponges and their symbiotic bacteria have been little studied. The amounts of polyP exhibited significant differences in twelve sponges from marine environments with high or low dissolved inorganic phosphorus (DIP) concentrations which were quantified by spectral analysis, even though in the same sponge genus, e.g., Mycale sp. or Callyspongia sp. PolyP enrichment rates of sponges in oligotrophic environments were far higher than those in eutrophic environments. -
Center for Environmental Research and Coastal Oceans Monitoring (CERCOM)
Center for Environmental Research and Coastal Oceans Monitoring (CERCOM) Molloy College Great South Bay, Long Island, New York Summer Phytoplankton Identification & Monitoring Program Annual Inventory Report 2019 FINAL REPORT Director; Dr. John T. Tanacredi Scientific Research Technical Assistant; Mr. Kyle F. Maurelli Administrative Coordinator; Ms. Regina Gorney Address: 132 Clyde Street West Sayville, NY 11796 2019 Student Intern Participation: Drew O’Connor Earth & Environmental Molloy College Studies Thomas Nadraus Biology Molloy College Brian Ford Biology Molloy College Ryan Mehryari Biology Molloy College Daman Kaur Nursing Molloy College Nick Buscemi Earth & Environmental Boston University Studies/ Philosophy Desmond Smith Earth & Environmental Molloy College Studies Erin Tudryn Earth & Environmental Molloy College Studies/ ART Caroline Kane Earth & Environmental Molloy College Studies Mark Maurelli Biomedical Engineering Stevens Institute for Technology Phytoplankton Collection Methodologies: 80 micron Plankton Tow Net with sample bottle attachment Phytoplankton Protocol: 1. Gather Samples 2. Make one slide per sample 3. View slides using microscope connected with computer 4. Record findings using “ Row # “ and “ Colum letter “ 5. Record using “ Tally’s “ per species found within sample 6. Capture anything interesting “ Take Picture “ 7. Duplicate pictures taken 8. Make sure measurement of species found is taken 9. Email Jennifer Maucher at [email protected] , include pictures, questions and names of the species you “guess” you found. If requested by NOAA, Jennifer will ask for a water sample from our findings. Phytoplankton Monitoring Network Harmful Algae Bloom Screening Data Entry Navigate to https://coastalscience.noaa.gov/research/stressor-impacts- mitigation/pmn/data/submit-data-regions/ (using Google Chrome, it can be found on the bookmarks bar), and select Atlantic Region 1. -
Photosymbiosis for Biomedical Applications
fbioe-08-577204 October 3, 2020 Time: 17:45 # 1 REVIEW published: 06 October 2020 doi: 10.3389/fbioe.2020.577204 Photosymbiosis for Biomedical Applications Myra N. Chávez1†, Nicholas Moellhoff2†, Thilo L. Schenck2, José Tomás Egaña3* and Jörg Nickelsen1* 1 Molecular Plant Science, Department Biology I, Ludwig-Maximilians-Universität München, Munich, Germany, 2 Division of Hand, Plastic and Aesthetic Surgery, University Hospital, Ludwig Maximilian Universität München, Munich, Germany, 3 Institute for Biological and Medical Engineering, Schools of Engineering, Biological Sciences and Medicine, Pontificia Universidad Católica de Chile, Santiago, Chile Without the sustained provision of adequate levels of oxygen by the cardiovascular system, the tissues of higher animals are incapable of maintaining normal metabolic activity, and hence cannot survive. The consequence of this evolutionarily suboptimal design is that humans are dependent on cardiovascular perfusion, and therefore highly susceptible to alterations in its normal function. However, hope may be at hand. Edited by: “Photosynthetic strategies,” based on the recognition that photosynthesis is the source Bruce Alan Bunnell, University of North Texas Health of all oxygen, offer a revolutionary and promising solution to pathologies related to Science Center, United States tissue hypoxia. These approaches, which have been under development over the past Reviewed by: 20 years, seek to harness photosynthetic microorganisms as a local and controllable Matjaž Jeras, source of oxygen to circumvent the need for blood perfusion to sustain tissue survival. University of Ljubljana, Slovenia Kar Wey Yong, To date, their applications extend from the in vitro creation of artificial human tissues to University of Alberta, Canada the photosynthetic maintenance of oxygen-deprived organs both in vivo and ex vivo, *Correspondence: while their potential use in other medical approaches has just begun to be explored. -
A Pilot Study to Determine the Potential Impacts of Plastics on Aotearoa-New Zealand's Marine Environment
A pilot study to determine the potential impacts of plastics on Aotearoa-New Zealand's marine environment Olga Pantos∗1, Francois Audrezet2, Fraser Doake1, Lloyd Donaldson3, Pierre Dupont1, Sally Gaw4, Joanne Kingsbury1, Louise Weaver1, Gavin Lear5, Grant Northcott6, Xavier Pochon2,5, Dawn Smith3, Beatrix Theobald3, Jessica Wallbank5, Anastasija Zaiko2,5, and Stefan Maday5 1The Institute of Environmental Science and Research { Christchurch, New Zealand 2Cawthron Institute { Nelson, New Zealand 3Scion { Rotorua, New Zealand 4The University of Canterbury { Christchurch, New Zealand 5University of Auckland [Auckland] { New Zealand 6Northcott Research Consultants Ltd { Hamilton, New Zealand Abstract Once in the ocean, plastics are rapidly colonised by complex communities. Due to the buoyant and resilient nature, ocean plastics pose a significant risk to ecosystems and fishery- based economies through their role in the translocation of invasive species and pathogens or changes in ecosystem function. Factors affecting the development and composition of these communities are still poorly understood, and there is currently no information on the biofilms that form on marine plastics in the southern hemisphere or their potential risks to the environment. This study aims to address this knowledge gap. To do this, two chemically and structurally distinct polymers, which are also common in marine plastic litter, nylon 6 and polyethylene, were deployed for 3-months in the Port of Lyttelton, Christchurch, New Zealand. Biofilm present after 2 weeks was dominated by diatoms and cyanobacteria. Metagenomic analysis showed that the plastisphere was distinct from the communities associated with glass control surfaces and the surrounding water. Polymer-specificity of the bacterial com- munities seen at 2-weeks was absent in subsequent time points, whereas fungal communities did not change over time.