CGH Results of Four ACC and Seven ACA Samples

Supplementary Table 4.

CGH results of four ACC and seven ACA samples

NoOfProb NoOfSampl Chr StartPos EndPos Size es Pval dir Score es 1607398 chr1 554068 16628054 7 657 0.01923 -1 -4.95 3 4578414 chr1 1089337 46873484 8 1919 0.03345 -1 -3.67 3 chr1 1592855 8846568 7253714 296 0.007296 -1 -8.19 3 chr1 8855808 16596605 7740798 303 0.04369 -1 -3.16 3 14272106 23876800 9604694 chr1 4 5 2 3387 0.02961 1 10.72 2 14525835 24692865 1.02E+0 chr1 8 4 8 3652 0.01768 1 17.99 2 14808154 15412168 chr1 1 5 6040145 379 0.04033 1 7.85 2 19501114 19506606 chr1 4 7 54924 4 0.04036 -1 -7.84 2 24064029 24168355 chr1 4 0 1043257 25 0.02345 1 13.55 2 24274835 24449576 chr1 8 4 1747407 65 0.03906 1 8.11 2 chr2 27309255 27334876 25622 3 0.007296 -1 -5.1 4 chr2 74545218 74585475 40258 6 0.01974 -1 -3.5 4 chr2 89387396 90999212 1611817 12 0.03934 1 8.05 2 chr2 94794045 94912717 118673 6 0.03933 1 3.35 3 10723042 1203242 chr2 95198004 3 0 399 0.008773 -1 -7.45 3 chr2 96143659 96221465 77807 5 0.02125 -1 -4.69 3 10418210 10689050 chr2 1 7 2708407 75 0.04102 -1 -3.27 3 13247170 13283072 chr2 9 7 359019 8 0.01343 1 5.98 3 24235888 24246479 chr2 6 3 105908 7 0.02107 -1 -3.41 4 3564636 chr3 38866 35685231 6 1181 0.01916 -1 -16.59 2 1225469 chr3 224527 12479222 6 464 0.03975 -1 -7.97 2 2293664 chr3 12603863 35540505 3 701 0.03324 -1 -9.54 2 1120777 chr3 46770835 57978612 8 594 0.02671 -1 -4.15 3 chr3 46879283 46942263 62981 3 0.008164 -1 -4.89 4 13310673 13314583 chr3 3 3 39101 3 0.01137 -1 -4.33 4 chr3 16399702 16410197 104949 4 0.02962 1 10.71 2 8 6 19690556 19694235 chr3 7 8 36792 3 0.005616 1 5.6 4 4856694 chr4 211249 48778188 0 1448 0.01470 1 21.64 2 chr4 618300 9375984 8757685 375 0.03938 1 8.04 2 chr4 618300 9375984 8757685 375 0.004352 -1 -73.13 2 chr4 949742 974593 24852 3 0.01145 -1 -6.49 3 chr4 39182209 40443311 1261103 51 0.01235 1 25.75 2 19111275 1.39E+0 chr4 52383658 0 8 4134 0.009331 1 34.1 2 12072166 6833800 chr4 52383658 6 9 2152 0.02363 1 13.45 2 1354351 chr4 57390074 70933588 5 297 0.003088 1 103.08 2 chr4 68901010 69643472 742463 7 0.02308 1 13.77 2 14369835 18216475 3846640 chr4 3 3 1 1117 0.03916 1 8.09 2 14940044 14946487 chr4 9 8 64430 4 0.04632 -1 -3.05 3 18193225 18391433 chr4 0 0 1982081 44 0.04841 -1 -6.52 2 18221662 18239032 chr4 1 6 173706 4 0.02606 -1 -12.18 2 18221662 18391433 chr4 1 0 1697710 40 0.01160 -1 -27.44 2 4519350 chr5 942758 46136265 8 1285 0.02823 1 3.03 4 2521907 chr5 1789692 27008762 1 686 0.04040 1 2.59 4 chr5 3672014 5553222 1881209 59 0.02576 1 3.14 4 3244587 chr5 13690393 46136265 3 901 0.02067 1 3.44 4 3633491 chr5 13690393 50025303 1 912 0.02069 1 3.44 4 1331837 chr5 13690393 27008762 0 340 0.03132 1 2.9 4 chr5 21991471 22038575 47105 3 0.02186 1 14.54 2 chr5 24224007 28783564 4559558 74 0.04592 1 2.45 4 chr5 27223555 28783564 1560010 21 0.009237 1 34.45 2 chr5 27223555 30911017 3687463 49 0.01385 1 22.97 2 chr5 31352972 34092141 2739170 119 0.03459 1 2.78 4 1564408 chr5 34345067 49989152 6 385 0.009350 1 34.03 2 1179119 chr5 34345067 46136265 9 376 0.009391 1 4.65 4 chr5 46008494 46136265 127772 2 0.03227 1 2.86 4 chr5 46008494 50025303 4016810 13 0.04470 1 2.48 4 17522607 1.25E+0 chr5 50058777 2 8 3952 0.02499 1 3.18 4 14438444 9406001 chr5 50324434 4 1 2914 0.02411 1 3.23 4 chr5 50692492 50724331 31840 4 0.03729 1 3.45 3 chr5 69741118 70422497 681380 4 0.001968 1 15.89 3 11861074 11871996 chr5 1 0 109220 5 0.004696 1 67.78 2 13870591 13904320 chr5 5 4 337290 18 0.03434 1 9.23 2 14488835 18015373 3526537 chr5 5 3 9 1259 0.001495 1 212.89 2 14488835 17522607 3033771 chr5 5 2 8 1025 0.002698 1 118 2 15003028 15005756 chr5 9 8 27280 4 0.03380 -1 -9.38 2 17577208 18015373 chr5 7 3 4381647 215 0.002988 1 106.53 2 chr6 4434596 4882939 448344 18 0.02777 -1 -4.06 3 1438134 chr6 29962649 44343991 3 781 0.02023 -1 -4.82 3 chr6 32071623 32104760 33138 3 0.01285 -1 -4.13 4 chr6 40248389 44343991 4095603 214 0.01184 -1 -6.38 3 1248379 chr6 40248389 52732186 8 490 0.02197 -1 -14.47 2 11806187 11822116 chr6 3 1 159289 5 0.02162 -1 -14.7 2 5768127 chr7 178208 57859486 9 1996 0.01014 1 31.38 2 chr7 4568304 6807033 2238730 108 0.01382 1 23.01 2 chr7 56593582 57859486 1265905 28 0.01321 1 4.09 4 15861310 9714402 chr7 61469075 2 8 3549 0.01334 1 23.84 2 1248824 chr7 64137180 76625428 9 412 0.03788 1 2.67 4 chr7 65963225 75223572 9260348 285 0.03870 1 2.64 4 chr7 75982431 76159610 177180 5 0.01376 -1 -5.9 3 chr7 87376199 87505782 129584 8 0.02227 1 4.58 3 10091325 chr7 97326092 5 3587164 207 0.03486 1 3.59 3 10091325 chr7 98773512 5 2139744 147 0.03444 1 3.61 3 13258885 13340106 chr7 9 4 812206 39 0.03112 1 3.82 3 13981409 13985177 chr7 1 0 37680 4 0.02997 1 10.59 2 chr8 23447536 23481279 33744 3 0.04861 -1 -2.38 4 chr8 39356395 39499952 143558 7 0.007907 1 40.25 2 chr8 39356395 39499952 143558 7 0.02298 -1 -13.83 2 14223287 9429628 chr8 47936583 0 8 2857 0.04036 1 7.85 2 14373920 14571842 chr8 8 5 1979218 128 0.02623 -1 -12.11 2 14373920 14453768 chr8 8 4 798477 50 0.007313 -1 -43.52 2 14553319 14555007 chr8 2 9 16888 3 0.001063 -1 -21.65 3 0.000798 chr9 34651641 34671086 19446 4 5 -1 -11.03 4 chr9 42348757 47002387 4653631 12 0.03556 1 2.74 4 chr9 68173032 70091853 1918822 7 0.03742 1 2.68 4 12826735 5982394 chr9 68443412 1 0 2004 0.01388 1 22.91 2 13900795 7056454 chr9 68443412 1 0 2550 0.03995 1 3.32 3 chr9 68443412 70091853 1648442 6 0.02381 1 3.25 4 chr9 94749581 94843953 94373 4 0.04232 -1 -7.48 2 chr9 94749581 94866211 116631 5 0.03909 -1 -8.1 2 13165211 13195464 chr9 1 8 302538 17 0.01699 1 18.72 2 13902129 13906255 chr9 0 4 41265 3 0.001669 -1 -17.27 3 13902129 13907410 0.000213 chr9 0 9 52820 4 2 -1 -48.41 3 3888100 chr10 138006 39019005 0 1342 0.04413 1 3.14 3 2414006 chr10 14878938 39019005 8 803 0.03710 1 3.46 3 chr10 18914740 19971296 1056557 21 0.002121 1 150.06 2 1810356 chr10 20915446 39019005 0 600 0.005604 1 56.79 2 13350385 9135330 chr10 42150559 8 0 3179 0.001277 1 249.32 2 chr11 186766 4631507 4444742 236 0.005132 -1 -62.02 2 chr11 609339 3625883 3016545 154 0.006265 -1 -8.85 3 chr11 47339668 47465537 125870 9 0.01247 -1 -4.18 4 chr11 47433041 47465537 32497 3 0.002052 -1 -7.98 4 1564891 chr11 60580122 76229031 0 827 0.02631 -1 -4.19 3 chr11 82898217 83157343 259127 11 0.005208 1 61.12 2 13388664 13420412 chr11 2 4 317483 11 0.01814 -1 -5.11 3 3406391 chr12 84918 34148829 2 1277 0.01663 1 5.35 3 13228929 9601963 chr12 36269653 0 8 3394 0.002115 1 15.33 3 3847786 chr12 36269653 74747516 4 1465 0.02555 1 4.25 3 chr12 47324587 56941949 9617363 587 0.04558 1 3.08 3 chr12 47645163 47651523 6361 3 0.01095 -1 -6.64 3 chr12 53083123 54361873 1278751 66 0.01645 1 5.38 3 12374458 13228929 chr12 9 0 8544702 296 0.01626 1 3.78 4 13058219 13228929 chr12 3 0 1707098 86 0.001027 1 309.89 2 13070084 13097142 chr12 0 6 270587 14 0.008546 1 4.81 4 5471150 chr13 18241965 72953467 3 1869 0.01288 1 24.7 2 7538839 chr13 18241965 93630357 3 2412 0.02570 1 12.36 2 chr13 51485145 51734666 249522 16 0.02650 1 11.98 2 chr14 18624183 18864761 240579 3 0.01282 1 24.82 2 chr14 19273089 19484213 211125 12 0.03252 1 9.75 2 10634995 8683437 chr14 19515581 6 6 3408 0.01081 1 6.69 3 chr14 21411948 22066342 654395 33 0.02599 1 3.13 4 chr14 23700668 23888497 187830 29 0.01346 1 23.63 2 chr14 23700668 24349000 648333 50 0.02694 1 3.09 4 chr14 75940575 76019863 79289 4 0.02483 -1 -3.19 4 10423760 10425673 chr14 5 1 19127 3 0.02936 -1 -2.98 4 10512848 10532239 chr14 8 1 193904 9 0.01812 -1 -5.11 3 10594679 10597814 chr14 3 6 31354 3 0.03362 1 9.43 2 7875066 chr15 18450362 97201021 0 3197 0.01307 1 24.34 2 chr15 18668097 20250086 1581990 40 0.03427 1 3.62 3 chr15 76316678 76345832 29155 3 0.01863 -1 -5.03 3 chr15 76316678 76350243 33566 4 0.01358 -1 -5.94 3 chr16 36566 5565917 5529352 332 0.04626 -1 -6.83 2 chr16 70150 3168094 3097945 216 0.03210 -1 -9.88 2 chr16 640061 5565917 4925857 291 0.04303 -1 -7.35 2 chr16 640061 3168094 2528034 180 0.01230 -1 -25.87 2 1026656 chr16 23608948 33875513 6 361 0.006117 1 52.03 2 chr16 23608948 31601429 7992482 328 0.01240 1 25.66 2 chr16 28245968 31449816 3203849 170 0.04946 1 6.38 2 chr16 30362729 33875513 3512785 115 0.01502 1 21.17 2 chr16 30362729 34976629 4613901 131 0.02061 1 4.77 3 chr16 30362729 31449816 1087088 77 0.02956 1 3.93 3 chr16 30362729 31601429 1238701 82 0.03017 1 3.88 3 chr17 1315206 1391816 76611 5 0.03146 -1 -3.8 3 - chr17 6871763 7425810 554048 50 0.002904 -1 109.59 2 5511703 chr17 23345942 78462979 8 2260 0.02597 -1 -4.22 3 1612756 chr17 24190826 40318389 4 763 0.008186 -1 -38.88 2 chr17 41840987 42049740 208754 3 0.008694 1 7.48 3 chr18 14147874 15370831 1222958 20 0.03212 1 2.87 4 chr18 67862009 76083258 8221250 275 0.03345 -1 -9.48 2 chr19 806995 814468 7474 3 0.02515 -1 -4.29 3 2324250 chr19 890222 24132722 1 1081 0.03639 1 2.72 4 2059480 chr19 3537915 24132722 8 948 0.03235 1 2.86 4 chr19 5729496 5784084 54589 4 0.001928 -1 -16.06 3 chr19 8690911 9789558 1098648 39 0.01574 1 3.82 4 chr19 15131317 15440628 309312 16 0.01630 1 3.77 4 chr19 16009742 20099747 4090006 224 0.04570 1 2.45 4 chr19 18609777 24103375 5493599 197 0.01059 1 4.44 4 chr19 18609777 20099747 1489971 82 0.03444 1 2.78 4 chr19 20156151 24132722 3976572 116 0.004583 1 69.46 2 3035205 chr19 33432475 63784527 3 1383 0.005825 1 9.18 3 chr19 40703674 40937516 233843 18 0.02696 1 3.09 4 chr19 47055630 47103890 48261 5 0.006026 -1 -9.03 3 chr19 53802478 55072630 1270153 92 0.02478 1 3.19 4 chr19 54004563 55005012 1000450 69 0.03614 1 2.72 4 chr19 56018105 56055201 37097 4 0.01168 -1 -6.43 3 chr19 58929907 59358496 428590 27 0.04594 1 2.45 4 chr19 59337566 59358496 20931 4 0.02778 -1 -4.06 3 chr19 60447657 60731427 283771 20 0.01913 1 4.96 3 chr19 61385560 61864014 478455 23 0.01474 1 3.92 4 chr20 21685907 28075905 6389999 132 0.006476 1 8.7 3 chr20 21685907 26129366 4443460 131 0.006683 1 8.56 3 3412321 chr20 28220206 62343424 9 1314 0.04131 1 7.66 2 chr20 28265913 37664453 9398541 381 0.03002 1 10.57 2 chr20 42798391 42954170 155780 8 0.02126 1 14.95 2 chr21 13334760 13461750 126991 3 0.03552 1 2.74 4 chr22 14513294 15508654 995361 10 0.01060 1 30.01 2 chr22 14796808 15508654 711847 9 0.01077 1 29.55 2 chr22 14796808 15790005 993198 18 0.03858 1 2.65 4 chr22 31738950 35711756 3972807 161 0.02745 1 11.57 2 chr22 49258578 49294274 35697 6 0.04130 -1 -7.66 2 chrX 48050416 48956107 905692 64 0.02218 -1 -4.59 3 chrX 48202097 48981272 779176 61 0.02696 -1 -4.13 3 chrX 89740371 89865867 125497 3 0.03487 1 2.77 4 chrX 91445374 92184515 739142 16 0.02092 1 15.2 2 15268499 15334068 chrX 8 4 655687 46 0.02029 -1 -4.81 3 ACA

Chr StartPos EndPos Size NoOfProbes Pval dir Score NoOfSamples chr1 59076473 59076873 401 1 0.00574 1 5,56 4 chr1 166450848 166451248 401 1 0.04782 -1 -3,00 3 chr1 230405032 230405432 401 1 0.0378 -1 -2,67 4 chr2 34638480 34638880 401 1 0.005774 -1 -4,42 5 chr2 70415402 70415802 401 1 0.04995 1 6,32 2 chr2 72432161 72432561 401 1 0.02392 -1 -2,48 7 chr2 158952898 158953298 401 1 0.01759 -1 -5,19 3 chr2 179895550 179895950 401 1 0.04617 -1 -2,08 6 chr2 226993565 226993965 401 1 0.001206 1 9,58 4 chr2 232900310 232900710 401 1 0.03436 -1 -2,78 4 chr3 15267641 15268041 401 1 0.04205 1 2,55 4 chr3 42564661 42565061 401 1 0.000779 -1 -408,41 2 chr3 68863463 68863863 401 1 0.009516 1 7,14 3 chr3 68863463 68863863 401 1 0.008916 -1 -4,74 4 chr3 121264505 121264905 401 1 0.02654 -1 -11,96 2 chr3 142651150 142651550 401 1 0.02329 -1 -2,85 5 chr3 152673664 152674064 401 1 0.001237 -1 -20,07 3 chr3 174020846 174021246 401 1 0.003779 1 11,44 3 chr3 174020846 174021246 401 1 0.01644 -1 -19,35 2 chr3 180852325 180852725 401 1 0.01232 1 6,25 3 chr3 191222699 191223099 401 1 0.001103 1 21,26 3 chr3 191222699 191223099 401 1 0.01541 -1 -20,64 2 chr4 69203706 69312185 108480 5 0.01067 1 29,82 2 chr4 69203706 69312185 108480 5 0.000362 -1 -879,79 2 chr4 72453249 72453649 401 1 0.03388 1 3,64 3 chr4 111169597 111169997 401 1 0.01909 -1 -2,65 7 chr5 873216 873616 401 1 0.000691 1 11,58 4 chr5 12872852 12873252 401 1 0.000721 -1 -26,31 3 chr5 135391811 135392211 401 1 0.03442 -1 -3,61 3 chr6 32558477 32660290 101814 5 0.000293 1 41,29 3 chr6 32558477 32660290 101814 5 0.000862 -1 -10,75 4 chr6 32595202 32660290 65089 4 0.01593 1 5,47 3 chr6 32595202 32660290 65089 4 4.04E-05 -1 -30,08 4 chr6 35866045 35873535 7491 2 0.01663 -1 -2,91 6 chr6 49328676 49329076 401 1 0.04427 -1 -3,13 3 chr6 55300107 55300507 401 1 0.01207 1 4,23 4 chr6 79058344 79058744 401 1 0.000614 1 28,50 3 chr6 105387516 105387916 401 1 0.03477 1 3,59 3 chr6 105387516 105387916 401 1 0.007502 -1 -5,05 4 chr6 160943801 160944201 401 1 0.01393 -1 -4,01 4 chr6 165695758 165696158 401 1 0.03073 1 2,92 4 chr7 47538409 47538809 401 1 0.002487 -1 -4,78 6 chr7 89455201 89455601 401 1 0.006595 -1 -5,29 4 chr7 97333835 97334235 401 1 9.72E-05 1 22,42 4 chr7 141518028 141518428 401 1 0.006044 -1 -5,46 4 chr7 152534841 152535241 401 1 0.03656 1 2,71 4 chr8 30809523 30809923 401 1 0.02113 -1 -4,71 3 chr8 39356395 39499952 143558 7 0.001369 1 4,89 7 chr9 4798591 4798991 401 1 0.01999 -1 -15,90 2 chr9 92089156 92089556 401 1 0.000618 1 8,15 5 chr9 134547108 134558520 11413 2 1.23E-05 1 201,27 3 chr9 134547108 134558520 11413 2 0.04092 -1 -7,74 2 chr9 136357899 136358299 401 1 0.04416 -1 -2,11 6 chr10 304439 304839 401 1 0.01937 1 4,93 3 chr10 29171440 29171840 401 1 0.03474 1 3,59 3 chr10 37508202 37508602 401 1 0.000657 1 484,88 2 chr10 46371043 46568696 197654 12 0.01797 -1 -2,69 7 chr10 106941029 106941429 401 1 0.007776 -1 -7,92 3 chr11 70455566 70455966 401 1 0.0405 -1 -2,32 5 chr11 75472732 75473132 401 1 0.003782 -1 -6,45 4 chr12 9528390 9528790 401 1 0.000246 1 10,35 5 chr12 9528390 9528790 401 1 0.01564 -1 -20,34 2 chr12 11404453 11444921 40469 3 0.009167 1 3,85 5 chr12 78321340 78347074 25735 2 0.04171 1 3,24 3 chr12 78321340 78347074 25735 2 0.03635 -1 -2,72 4 chr12 84987761 84988161 401 1 0.000642 -1 -8,07 5 chr12 107681874 107682274 401 1 0.005557 -1 -5,62 4 chr13 56663997 56664397 401 1 0.0384 -1 -2,22 6 chr13 97270028 97270428 401 1 0.0113 -1 -28,17 2 chr13 102053170 102053570 401 1 0.006378 1 8,77 3 chr13 102053170 102053570 401 1 0.01348 -1 -4,06 4 chr14 18864361 19484213 619853 16 0.001825 1 6,10 5 chr14 19273089 19484213 211125 12 0.00421 1 4,84 5 chr14 44651050 44651450 401 1 0.000233 -1 -10,50 5 chr14 82254469 82254869 401 1 0.03739 1 2,68 4 chr14 105609266 105623270 14005 2 0.03228 1 2,26 7 chr15 18668097 20220616 1552520 39 0.004697 1 4,69 5 chr15 18741516 20060261 1318746 37 0.003674 1 5,03 5 chr15 19108924 20060261 951338 31 0.003322 1 5,17 5 chr15 19108924 20220616 1111693 32 0.003758 1 5,00 5 chr15 80135959 80136359 401 1 0.02657 -1 -4,16 3 chr15 96481440 96481840 401 1 0.004779 1 4,66 5 chr15 100282619 100283019 401 1 0.0219 -1 -2,68 6 chr16 3910987 3911387 401 1 0.004174 1 76,25 2 chr16 81243295 81243695 401 1 0.03342 -1 -9,49 2 chr17 10068203 10068603 401 1 0.00581 -1 -9,20 3 chr17 41544024 41707070 163047 8 5.38E-05 1 96,41 3 chr17 73261601 73262001 401 1 0.01319 -1 -24,12 2 chr18 10472596 10472996 401 1 0.04821 -1 -2,39 4 chr18 20245755 20246155 401 1 2.63E-06 1 74,81 4 chr18 47708078 47708478 401 1 0.01595 1 5,46 3 chr18 56550273 56550673 401 1 0.02862 1 11,09 2 chr18 72055080 72055480 401 1 0.02427 1 4,37 3 chr19 40139819 40140219 401 1 0.02318 -1 -4,48 3 chr19 56229148 56229548 401 1 0.01367 1 3,40 5 chr20 10524244 10524644 401 1 0.01097 -1 -6,64 3 chr20 12837307 12837707 401 1 0.000799 -1 -7,61 5 chr20 17272758 17273158 401 1 0.00344 1 5,12 5 chr20 58219758 58220158 401 1 0.0135 -1 -4,06 4 chr21 39809085 39809358 274 1 0.001429 -1 -18,67 3 chr22 22676349 22706965 30617 3 0.01596 1 2,95 6 chr22 27779015 27779415 401 1 0.04779 -1 -3,00 3 chr22 32006312 32006712 401 1 0.00414 -1 -4,86 5 chr22 38265344 38265744 401 1 0.00517 -1 -61,57 2