David M. Raup 1933–2015
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
The MBL Model and Stochastic Paleontology
216 Chapter seven ised exciting new avenues for research, that insights from biology and ecology could more profi tably be applied to paleontology, and that the future lay in assembling large databases as a foundation for analysis of broad-scale patterns of evolution over geological history. But in compar- ison to other expanding young disciplines—like theoretical ecology— paleobiology lacked a cohesive theoretical and methodological agenda. However, over the next ten years this would change dramatically. Chapter Seven One particular ecological/evolutionary issue emerged as the central unifying problem for paleobiology: the study and modeling of the his- “Towards a Nomothetic tory of diversity over time. This, in turn, motivated a methodological question: how reliable is the fossil record, and how can that reliability be Paleontology”: The MBL Model tested? These problems became the core of analytical paleobiology, and and Stochastic Paleontology represented a continuation and a consolidation of the themes we have examined thus far in the history of paleobiology. Ultimately, this focus led paleobiologists to groundbreaking quantitative studies of the inter- The Roots of Nomotheticism play of rates of origination and extinction of taxa through time, the role of background and mass extinctions in the history of life, the survivor- y the early 1970s, the paleobiology movement had begun to acquire ship of individual taxa, and the modeling of historical patterns of diver- Bconsiderable momentum. A number of paleobiologists began ac- sity. These questions became the central components of an emerging pa- tively building programs of paleobiological research and teaching at ma- leobiological theory of macroevolution, and by the mid 1980s formed the jor universities—Stephen Jay Gould at Harvard, Tom Schopf at the Uni- basis for paleobiologists’ claim to a seat at the “high table” of evolution- versity of Chicago, David Raup at the University of Rochester, James ary theory. -
Spatial Criteria Used in IUCN Assessment Overestimate Area of Occupancy for Freshwater Taxa
Spatial Criteria Used in IUCN Assessment Overestimate Area of Occupancy for Freshwater Taxa By Jun Cheng A thesis submitted in conformity with the requirements for the degree of Masters of Science Ecology and Evolutionary Biology University of Toronto © Copyright Jun Cheng 2013 Spatial Criteria Used in IUCN Assessment Overestimate Area of Occupancy for Freshwater Taxa Jun Cheng Masters of Science Ecology and Evolutionary Biology University of Toronto 2013 Abstract Area of Occupancy (AO) is a frequently used indicator to assess and inform designation of conservation status to wildlife species by the International Union for Conservation of Nature (IUCN). The applicability of the current grid-based AO measurement on freshwater organisms has been questioned due to the restricted dimensionality of freshwater habitats. I investigated the extent to which AO influenced conservation status for freshwater taxa at a national level in Canada. I then used distribution data of 20 imperiled freshwater fish species of southwestern Ontario to (1) demonstrate biases produced by grid-based AO and (2) develop a biologically relevant AO index. My results showed grid-based AOs were sensitive to spatial scale, grid cell positioning, and number of records, and were subject to inconsistent decision making. Use of the biologically relevant AO changed conservation status for four freshwater fish species and may have important implications on the subsequent conservation practices. ii Acknowledgments I would like to thank many people who have supported and helped me with the production of this Master’s thesis. First is to my supervisor, Dr. Donald Jackson, who was the person that inspired me to study aquatic ecology and conservation biology in the first place, despite my background in environmental toxicology. -
Detecting Patterns of Species Diversification in the Presence of Both Rate Shifts and Mass Extinctions
Version dated: August 3, 2021 Detecting patterns of species diversification in the presence of both rate shifts and mass extinctions Sacha Laurent12, Marc Robinson-Rechavi12, and Nicolas Salamin12 1Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland 2Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland (Keywords: Phylogeny, Diversification, Mass Extinctions) Abstract Background: Recent methodological advances allow better examination of speciation and extinction processes and patterns. A major open question is the origin of large discrepancies in species number between groups of the same age. Existing frameworks to model this diversity either focus on changes between lineages, neglecting global effects such as mass arXiv:1404.5441v3 [q-bio.PE] 31 Aug 2015 extinctions, or focus on changes over time which would affect all lineages. Yet it seems probable that both lineages differences and mass extinctions affect the same groups. Results: Here we used simulations to test the performance of two widely used methods under complex scenarios of diversification. We report good performances, although with a tendency to over-predict events with increasing complexity of the scenario. Conclusion: Overall, we find that lineage shifts are better detected than mass extinctions. This work has significance to assess the methods currently used to estimate changes in diversification using phylogenetic trees. Our results also point toward the need to develop new models of diversification to expand our capabilities to analyse realistic and complex evolutionary scenarios. Background The estimation of the rates of speciation and extinction provides important information on the macro-evolutionary processes shaping biodiversity through time (Ricklefs 2007). Since the seminal paper by Nee et al: Nee et al. -
What Really Happened in the Late Triassic?
Historical Biology, 1991, Vol. 5, pp. 263-278 © 1991 Harwood Academic Publishers, GmbH Reprints available directly from the publisher Printed in the United Kingdom Photocopying permitted by license only WHAT REALLY HAPPENED IN THE LATE TRIASSIC? MICHAEL J. BENTON Department of Geology, University of Bristol, Bristol, BS8 1RJ, U.K. (Received January 7, 1991) Major extinctions occurred both in the sea and on land during the Late Triassic in two major phases, in the middle to late Carnian and, 12-17 Myr later, at the Triassic-Jurassic boundary. Many recent reports have discounted the role of the earlier event, suggesting that it is (1) an artefact of a subsequent gap in the record, (2) a complex turnover phenomenon, or (3) local to Europe. These three views are disputed, with evidence from both the marine and terrestrial realms. New data on terrestrial tetrapods suggests that the late Carnian event was more important than the end-Triassic event. For tetrapods, the end-Triassic extinction was a whimper that was followed by the radiation of five families of dinosaurs and mammal- like reptiles, while the late Carnian event saw the disappearance of nine diverse families, and subsequent radiation of 13 families of turtles, crocodilomorphs, pterosaurs, dinosaurs, lepidosaurs and mammals. Also, for many groups of marine animals, the Carnian event marked a more significant turning point in diversification than did the end-Triassic event. KEY WORDS: Triassic, mass extinction, tetrapod, dinosaur, macroevolution, fauna. INTRODUCTION Most studies of mass extinction identify a major event in the Late Triassic, usually placed at the Triassic-Jurassic boundary. -
Low-Latitude Origins of the Four Phanerozoic Evolutionary Faunas
bioRxiv preprint doi: https://doi.org/10.1101/866186; this version posted December 6, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Low-Latitude Origins of the Four Phanerozoic Evolutionary Faunas A. Rojas1*, J. Calatayud1, M. Kowalewski2, M. Neuman1, and M. Rosvall1 1Integrated Science Lab, Department of Physics, Umeå University, SE-901 87 Umeå, Sweden 5 2Florida Museum of Natural History, Division of Invertebrate Paleontology, University of Florida, Gainesville, FL 32611, USA *Correspondence to: [email protected] Abstract: Sepkoski’s hypothesis of Three Great Evolutionary Faunas that dominated 10 Phanerozoic oceans represents a foundational concept of macroevolutionary research. However, the hypothesis lacks spatial information and fails to recognize ecosystem changes in Mesozoic oceans. Using a multilayer network representation of fossil occurrences, we demonstrate that Phanerozoic oceans sequentially harbored four evolutionary faunas: Cambrian, Paleozoic, Mesozoic, and Cenozoic. These mega-assemblages all emerged at low latitudes and dispersed 15 out of the tropics. The Paleozoic–Mesozoic transition was abrupt, coincident with the Permian mass extinction, whereas the Mesozoic–Cenozoic transition was protracted, concurrent with gradual ecological shifts posited by the Mesozoic Marine Revolution. These findings support the notion that long-term ecological changes, historical contingencies, and major geological events all have played crucial roles in shaping the evolutionary history of marine animals. 20 One Sentence Summary: Network analysis reveals that Phanerozoic oceans harbored four evolutionary faunas with variable tempo and underlying causes. -
Prominent Role of Invasive Species in Avian Biodiversity Loss
Biological Conservation 142 (2009) 2043–2049 Contents lists available at ScienceDirect Biological Conservation journal homepage: www.elsevier.com/locate/biocon Prominent role of invasive species in avian biodiversity loss Miguel Clavero a,b,*, Lluís Brotons a, Pere Pons b, Daniel Sol c a Grup d’Ecologia del Paisatge, Àrea de Biodiversitat, Centre Tecnològic Forestal de Catalunya, Pujada del Seminari s/n. 25280 Solsona, Catalonia, Spain b Departament de Ciències Ambientals, Universitat de Girona, Campus de Montilivi, 17071 Girona, Catalonia, Spain c CREAF-CSIC (Centre for Ecological Research and Applied Forestries—Spanish National Research Council), Autonomous University of Barcelona, E-08193 Bellaterra, Catalonia, Spain article info abstract Article history: The rise of extinction rates associated with human activities has led to a growing interest in identifying Received 20 January 2009 extinction-prone taxa and extinction-promoting drivers. Previous work has identified habitat alterations Received in revised form 23 March 2009 and invasive species as the major drivers of recent bird extinctions. Here, we extend this work to ask how Accepted 29 March 2009 these human-driven impacts differentially affect extinction-prone taxa, and if any specific driver pro- Available online 28 April 2009 motes taxonomic homogenization of avifauna. Like most previous studies, our analysis is based on global information of extinction drivers affecting threatened and extinct bird species from the IUCN Red List. Keywords: Unlike previous studies, we employ a multivariate statistical framework that allows us to identify the Extinction risk main gradients of variation in extinction drivers. By using these gradients, we show that bird families Extinction drivers Biotic homogenization with the highest extinction risk are primarily associated with threats posed by invasive species, once spe- Invasive species cies richness and phylogeny are taken into account. -
Fish-Movement Ecology in High-Gradient Headwater Streams: Its Relevance to Fish Passage Restoration Through Stream Culvert Barriers
Fish-Movement Ecology in High-Gradient Headwater Streams: Its Relevance to Fish Passage Restoration Through Stream Culvert Barriers Hoffman, R., and Dunham, J. Open-File Report 2007–1140 U.S. Department of the Interior U.S. Geological Survey U.S. Department of the Interior DIRK KEMPTHORNE, Secretary U.S. Geological Survey Mark D. Myers, Director U.S. Geological Survey, Reston, Virginia 2007 Revised and reprinted: 2007 For product and ordering information: World Wide Web: http://www.usgs.gov/pubprod Telephone: 1-888-ASK-USGS For more information on the USGS—the Federal source for science about the Earth, its natural and living resources, natural hazards, and the environment: World Wide Web: http://www.usgs.gov Telephone: 1-888-ASK-USGS Suggested citation: Hoffman, R., and Dunham, J., 2007, Fish Movement Ecology in High Gradient Headwater Streams: Its Relevance to Fish Passage Restoration Through Stream Culvert Barriers: U.S. Geological Survey, OFR 2007- 1140, p. 40. Any use of trade, product, or firm names is for descriptive purposes only and does not imply endorsement by the U.S. Government. Although this report is in the public domain, permission must be secured from the individual copyright owners to reproduce any copyrighted material contained within this report. ii Contents Contents ..............................................................................................................................................................................iii Executive Summary............................................................................................................................................................1 -
Long Term Evolutionary Responses to Whole Genome Duplication
Unicentre CH-1015 Lausanne http://serval.unil.ch Year : 2016 Long term evolutionary responses to whole genome duplication Sacha Laurent Sacha Laurent, 2016, Long term evolutionary responses to whole genome duplication Originally published at : Thesis, University of Lausanne Posted at the University of Lausanne Open Archive http://serval.unil.ch Document URN : urn:nbn:ch:serval-BIB_8E5536BAC6042 Droits d’auteur L'Université de Lausanne attire expressément l'attention des utilisateurs sur le fait que tous les documents publiés dans l'Archive SERVAL sont protégés par le droit d'auteur, conformément à la loi fédérale sur le droit d'auteur et les droits voisins (LDA). A ce titre, il est indispensable d'obtenir le consentement préalable de l'auteur et/ou de l’éditeur avant toute utilisation d'une oeuvre ou d'une partie d'une oeuvre ne relevant pas d'une utilisation à des fins personnelles au sens de la LDA (art. 19, al. 1 lettre a). A défaut, tout contrevenant s'expose aux sanctions prévues par cette loi. Nous déclinons toute responsabilité en la matière. Copyright The University of Lausanne expressly draws the attention of users to the fact that all documents published in the SERVAL Archive are protected by copyright in accordance with federal law on copyright and similar rights (LDA). Accordingly it is indispensable to obtain prior consent from the author and/or publisher before any use of a work or part of a work for purposes other than personal use within the meaning of LDA (art. 19, para. 1 letter a). Failure to do so will expose offenders to the sanctions laid down by this law. -
Biodiversity Conservation and Phylogenetic Systematics Preserving Our Evolutionary Heritage in an Extinction Crisis Topics in Biodiversity and Conservation
Topics in Biodiversity and Conservation Roseli Pellens Philippe Grandcolas Editors Biodiversity Conservation and Phylogenetic Systematics Preserving our evolutionary heritage in an extinction crisis Topics in Biodiversity and Conservation Volume 14 More information about this series at http://www.springer.com/series/7488 Roseli Pellens • Philippe Grandcolas Editors Biodiversity Conservation and Phylogenetic Systematics Preserving our evolutionary heritage in an extinction crisis With the support of Labex BCDIV and ANR BIONEOCAL Editors Roseli Pellens Philippe Grandcolas Institut de Systématique, Evolution, Institut de Systématique, Evolution, Biodiversité, ISYEB – UMR 7205 Biodiversité, ISYEB – UMR 7205 CNRS MNHN UPMC EPHE, CNRS MNHN UPMC EPHE, Muséum National d’Histoire Naturelle Muséum National d’Histoire Naturelle Sorbonne Universités Sorbonne Universités Paris , France Paris , France ISSN 1875-1288 ISSN 1875-1296 (electronic) Topics in Biodiversity and Conservation ISBN 978-3-319-22460-2 ISBN 978-3-319-22461-9 (eBook) DOI 10.1007/978-3-319-22461-9 Library of Congress Control Number: 2015960738 Springer Cham Heidelberg New York Dordrecht London © The Editor(s) (if applicable) and The Author(s) 2016 . The book is published with open access at SpringerLink.com. Chapter 15 was created within the capacity of an US governmental employment. US copyright protection does not apply. Open Access This book is distributed under the terms of the Creative Commons Attribution Noncommercial License, which permits any noncommercial use, distribution, and reproduction in any medium, provided the original author(s) and source are credited. All commercial rights are reserved by the Publisher, whether the whole or part of the material is concerned, specifi cally the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfi lms or in any other physical way, and transmission or information storage and retrieval, electronic adaptation, computer software, or by similar or dissimilar methodology now known or hereafter developed. -
A New Picture of Life's History on Earth
Commentary A new picture of life’s history on Earth Mark Newman* Santa Fe Institute, 1399 Hyde Park Road, Santa Fe, NM 87501 hen most people think of paleon- his primary source (2, 3). Other compila- database is as exhaustive as possible, sub- Wtology, they picture the field pale- tions also have been published (4, 5), but stantial biases are introduced. For exam- ontologist digging up fossils with a tooth- Sepkoski’s database has received more ple, it is quite feasible that the increase in brush and publishing descriptions of the attention by far than any other. Sepkoski’s diversity toward recent times seen in Fig. anatomies of uncovered specimens in the database was simple in structure: it re- 1 is a result primarily of the greater vol- trade literature. New discoveries of dino- corded the first and last known occur- ume of rock available from recent times, saurs even make the national headlines. rences in the fossil record of more than and the greater amount of effort that has For many decades the discovery and de- 30,000 marine invertebrate genera in been put into studying these rocks. A scription of a previously unknown fossil about 4,000 families. Marine invertebrates number of studies over the years have species was the calling card that gained have been the focus of most statistical presented evidence showing that apparent would-be paleontologists professional ac- studies, because preservation is much diversity is closely correlated with the ceptance. However, in the last quarter of more reliable in marine environments and intensity with which different periods of a century or so, many of the most intrigu- invertebrates are much more numerous geologic time have been sampled (6, 7). -
Cyprinidae): Contributes to the Restocking of Wild Populations
UNIVERSIDADE DE LISBOA FACULDADE DE CIÊNCIAS DEPARTAMENTO DE BIOLOGIA ANIMAL Habitat use, growth and reproductive behaviour of the western ruivaco (Cyprinidae): contributes to the restocking of wild populations Mestrado em Biologia da Conservação Daniel Chagas Roquette Mameri Dissertação orientada por: Doutora Carla Sousa Santos (ISPA–MARE) Doutora Maria Filomena Magalhães (FCUL–CE3C) 2015 This page was intentionally left in blank 2015 UNIVERSIDADE DE LISBOA FACULDADE DE CIÊNCIAS DEPARTAMENTO DE BIOLOGIA ANIMAL Habitat use, growth and reproductive behaviour of the western ruivaco (Cyprinidae): contributes to the restocking of wild populations Mestrado em Biologia da Conservação Daniel Chagas Roquette Mameri Dissertação orientada por: Doutora Carla Sousa Santos (ISPA–MARE) Doutora Maria Filomena Magalhães (FCUL–CE3C) 2015 INDEX Collaborations ............................................................................................................................. 2 Agradecimentos ........................................................................................................................... 3 Resumo ......................................................................................................................................... 4 Abstract ........................................................................................................................................ 8 1. Introduction ......................................................................................................................... 9 1.1. -
Palaeontologia Electronica the Paleobiological Revolution
Palaeontologia Electronica http://palaeo-electronica.org The Paleobiological Revolution: Essays on the Growth of Modern Paleontology Reviewed by Brian Switek David Sepkoski and Michael Ruse (editors) belief that paleon- University of Chicago Press, 2009 tology was more 584 pp., $65.00 (hardcover) closely related to ISBN 978-0-226-74861-0 geology rein- By the middle of the 20th century a great forced the idea divide had opened within evolutionary biology. As that it had little to summarized by paleontologist George Gaylord contribute to the Simpson, many geneticists “said that paleontology life sciences. had no further contributions to make to biology”, Despite this wide- while paleontologists believed that the emerging spread reticence science of genetics “had no significance for the to treat paleontol- true biologist.” (Simpson, 1944). Simpson, for his ogy as an evolu- own part, attempted to bring the disciplines into tionary discipline, accord in his classic Tempo and Mode in Evolution, however, paleon- but despite his efforts genetics eventually out- tologists such as stripped paleontology as the evolutionary science G.G. Simpson and du jour. Paleontology, some evolutionary theorists Norman Newell believed, could only testify to the fact of evolution fostered paleobiological research through the while telling us nothing of how such changes actu- 1950’s and 1960’s, setting a long fuse that finally ally occurred. Fortunately, however, some paleon- exploded in the 1970’s. Thomas Schopf, Niles tologists were not satisfied with this blinkered view Eldredge, Stephen Jay Gould, Elisabeth Vrba, of their discipline, and they began what historians David Raup, James Valentine, Jack Sepkoski, and David Sepkoski and Michael Ruse have called The many others transformed paleontology from a rela- Paleobiological Revolution.