Asian Journal of Chemistry Asian Journal

Total Page:16

File Type:pdf, Size:1020Kb

Asian Journal of Chemistry Asian Journal Asian Journal of Chemistry; Vol. 28, No. 3 (2016), 555-561 ASIAN JOURNAL OF CHEMISTRY http://dx.doi.org/10.14233/ajchem.2016.19405 Chemical Evolution of Aminoacetonitrile to Glycine under Discharge onto Primitive Hydrosphere: Simulation Experiments Using Glow Discharge T. MUNEGUMI Department of Science Education, Naruto University of Education, Naruto, Tokushima 772-8502, Japan Corresponding author: Fax: +81 88 6876022; Tel: +81 88 6876418; E-mail: [email protected] Received: 15 June 2015; Accepted: 31 July 2015; Published online: 5 December 2015; AJC-17650 Aminoacetonitrile is an important precursor of abiotic amino acids, as shown in the mechanism that was developed to explain the results of the Miller-type spark-discharge experiment. In present experimental setup, a spark discharge is generated in a simulated reducing atmosphere to yield hydrogen cyanide, aldehyde and ammonia; in a second step, a solution-phase reaction proceeds via aminoacetonitrile to give amino acids. However, when the same experiment is carried out in a non-reducing atmosphere, the yield of amino acids is very low. Contact glow discharge electrolysis onto the aqueous phase, which simulates an energy source for chemical evolution, converted aminoacetonitrile via glycinamide to glycine. The mechanism of glycinamide formation was explained by considering the addition of hydrogen and hydroxyl radicals to the C-N triple bond and subsequent transformation into the amide, which was then oxidized to the amino acid. This research suggests that amino acid amides and amino acids can be obtained through oxidation-reduction with H and OH radicals in the primitive hydrosphere whether under reducing or non-reducing conditions. Keywords: Aminoacetonitrile, Chemical evolution, Contact glow discharge electrolysis. INTRODUCTION have actually proceeded in a primitive hydrosphere, if the primitive atmosphere would have supplied the majority of The formation of primitive amino acids has been discussed materials for amino acid formation on the primitive earth. with respect to both terrestrial [1,2] and extra terrestrial [2,3] On the other hand, the presence of amino acids and their origins. The results of simulation experiments involving Miller- precursors in interstellar solid medium [15,16], interstellar gas type spark-discharge [4,5] in an assumed reducing atmosphere phase [17-20], comets [21,22] and meteorites [23-25] has been (CH4, NH3, H2O, H2), glow discharge onto aqueous solutions reported. Experiments involving use of high-energy particles [6] and other energy sources [2,7,8] have supported the [26,27] and ultraviolet light [28-30] to irradiate simulated conclusion of a terrestrial origin of amino acids. Although the interstellar media have provided results that support formation same Miller-type spark-discharge experiment gave very low of amino acids and their precursors. The survival of such yield of amino acids [9] in an assumed non-reducing [10] compounds within extra terrestrial bodies during atmospheric atmosphere (CO2, N2, H2O), the value of Miller-type spark- entry to earth has been discussed [31,32]. Several experiments discharge has been supported by the research results [11] that that have been designed to simulate atmospheric entry have the early earth atmosphere would have been more hydrogen- supported the conclusion that amino acids remain intact, rich and reducing rather than non-reducing. On the contrary, although the amount of degradation might depend on the size a recent report [12] on the oxidation state of Hadean magmas of the extra terrestrial bodies and on the nature of the amino suggests that the early earth atmosphere would have been acids [33-42]. oxidizing. Discussion about whether the early atmosphere had Aminoacetonitrile is known to be an important precursor been reducing or non-reducing is still controversial. Amino for abiotic amino acid formation [3,43,44] and subsequent acid formation processes under Miller-type spark-discharge peptide formation (Fig. 2) [45] in the primitive earth and conditions has been explained by a two-step mechanism (Fig. interstellar medium [46]. Herein, the formation of glycine from 1): the first step is the formation of acetaldehyde and hydrogen aminoacetonitrile via glycinamide in aqueous solutions cyanide in the gas phase and the second step is a Strecker-type induced by contact glow discharge electrolysis (CGDE; also synthesis in the solution phase [13,14] to give aminoacetonitrile, termed Harada discharge [47-50]) as a simulation energy source which hydrolyzes to glycine. Amino acid formation would in a chemical evolutionary process is reported. The author uses 556 Munegumi Asian J. Chem. Contact glow discharge electrolysis (CGDE): A glass NH3 H2 reaction vessel (114 × 35 mm i.d.) was used for CGDE as Electric reported previously [49,50]. The reaction mixture (20 mL) Gas phase discharge CH4 H2O containing aminoacetonitrile (20 mM) and inorganic salt buffer (200 mM, pH 1-10) in the reaction vessel was cooled in an ice-water bath to 10-30 °C. After bubbling argon gas through the reaction mixture for 15 min, discharge electrolysis (440- 520 V, 20-30 mA) was carried out between the platinum anode O C H NH3 HC N above the solution and the platinum cathode in the solution H over bubbling argon gas. Electric power was supplied by a Model PS-1515 (Toyo Solid State, Tokyo) power supply. An H aliquot of the reaction solution was taken at regular time intervals and analyzed with an amino acid analyzer. H N C C N 2 Hydrolysis of aminoacetonitrile at room temperature Solution phase H Aminoacetonitrile without CGDE: Aqueous solutions containing 20 mM amino- +H2O acetonitrile in 200 mM buffer were stirred with bubbling argon. An aliquot (about 0.200 mL) of the reaction solution was taken H O at regular time intervals and analyzed with an amino acid H2NCC NH2 analyzer. H Glycinamide Amino acid analysis: The composition of amino compounds in the reaction mixtures were analyzed with a JLC-300 amino +H2O, -NH3 acid analyzer (JEOL, Tokyo, Japan). Typical chromatograms H O of standard compounds and of a reaction mixture are shown in Fig. 3. Glycine, aminoacetonitrile, glycinamide and ammonia H2NCC OH were almost baseline separated; their typical retention times H Glycine were as follows: glycine (39.6 min), aminoacetonitrile (73.9 min), glycinamide (77.0 min) and ammonia (80.1 min). Eluted Fig. 1. Plausible reaction pathway of amino acid formation in solution under Miller type discharge compounds were reacted with ninhydrin to enable detection by measuring absorption at 570 nm. Concentration of ammonia H in the reaction mixtures were determined by drawing the initial CH2O + NH3 + HCN H2N C C N concentration out of the actual concentration at each reaction H time. Aminoacetonitrile (a) Standard H H H HNCH-CONH H H 22 2 n H2N C C N N C C N C C OH H H NH n H O n R Polyglycine H 570 nm N C C OH H Polypeptide 0 O n 12 24 36 48 60 72 84 96 108 120 Fig. 2. Aminoacetonitrile as an important intermediate in the formation of (b) Standard HNCH-CN polypeptides 22 570 nm 0 an inert gas, argon atmosphere as a reaction condition to 12 24 36 48 60 72 84 96 monitor the solution phase reactions less susceptible to whether 108 120 HNCH-CONH the atmosphere is reducing or non-reducing. The results demons- (c) 22 2 HNCH-COOH 22 HNCH-CN22 NH trate that amino acid amides and amino acids are formed 570 nm 3 dominantly by oxidation-reduction rather than hydrolysis of 0 12 24 36 48 60 72 84 96 aminoacetonitrile. Retention time (min) 108 120 Fig. 3. Typical chromatograms (a, b) of standard compounds and (c) of a EXPERIMENTAL reaction mixture after exposure to CGDE. A JLC-300 amino acid analyzer was used for analysis. Eluted compounds were reacted with Inorganic buffer solutions (200 mM) were prepared from ninhydrin to enable detection by measuring absorption at 570 nm sulfuric acid (pH 1), sodium hydrogen phosphate (pH 4-7) and sodium carbonate (pH 10-11). The inorganic salts and RESULTS AND DISCUSSION aminoacetonitrile sulfate were purchased from Tokyo Kasei Co., Ltd. (Tokyo, Japan). Glycinamide hydrochloride was Contact glow discharge electrolysis onto aminoaceto- purchased from Kokusan Chemical Co., Ltd. (Tokyo, Japan). nitrile solution: The changes in concentration of amino- Glycine was purchased from Wako Pure Chemical Industries, acetonitrile and products during the CGDE at pH 10 were Ltd. (Osaka, Japan). plotted against the reaction time (Fig. 4(d)). After 60 min Vol. 28, No. 3 (2016) Chemical Evolution of Aminoacetonitrile to Glycine 557 (a) CGDE onto aminoacetonitrile solution at pH 1 (b) CGDE onto aminoacetonitrile solution at pH 6 100 100 80 80 ) % 60 60 HNCHCN22 H22 NCH CONH 2 HNCHCN22 Gly 40 H22 NCH CONH 2 40 Gly NH3 NH3 Yield and recovery ( Yield and recovery (%) recovery and Yield 20 20 0 0 0 20 40 60 80 0 20 40 60 80 Reaction time (min) Reaction time (min) (c) CGDE onto aminoacetonitrile solution at pH 8 (d) CGDE onto aminoacetonitrile solution at pH 10 100 Gly 100 H22 NCH CN H NCH CONH 80 22 2 80 NH3 60 60 H22 NCH CN H22 NCH CONH 2 40 40 Gly NH3 Yield and and recovery(%) Yield Yield and recovery(%) 20 20 0 0 0 20 40 60 80 0 20 40 60 80 Reaction time (min) Reaction time (min) Fig. 4. CGDE onto aqueous solutions containing aminoacetonitrile (20 mM) at pH 1, 6, 8 and 10. Conditions of CGDE: 400-440 V, 20 A reaction, the amount of aminoacetonitrile decreased to 45 % into other compounds. The identities of these compounds are (9 mM) compared with the initial concentration; at this point, not known; however, the negative response to analysis with amino acid analysis revealed the presence of glycine (0.14 ninhydrin suggests that the compounds do not contain an amino mM, 0.7 %) and glycinamide (2.9 mM, 14.5 %).
Recommended publications
  • Transport of Dangerous Goods
    ST/SG/AC.10/1/Rev.16 (Vol.I) Recommendations on the TRANSPORT OF DANGEROUS GOODS Model Regulations Volume I Sixteenth revised edition UNITED NATIONS New York and Geneva, 2009 NOTE The designations employed and the presentation of the material in this publication do not imply the expression of any opinion whatsoever on the part of the Secretariat of the United Nations concerning the legal status of any country, territory, city or area, or of its authorities, or concerning the delimitation of its frontiers or boundaries. ST/SG/AC.10/1/Rev.16 (Vol.I) Copyright © United Nations, 2009 All rights reserved. No part of this publication may, for sales purposes, be reproduced, stored in a retrieval system or transmitted in any form or by any means, electronic, electrostatic, magnetic tape, mechanical, photocopying or otherwise, without prior permission in writing from the United Nations. UNITED NATIONS Sales No. E.09.VIII.2 ISBN 978-92-1-139136-7 (complete set of two volumes) ISSN 1014-5753 Volumes I and II not to be sold separately FOREWORD The Recommendations on the Transport of Dangerous Goods are addressed to governments and to the international organizations concerned with safety in the transport of dangerous goods. The first version, prepared by the United Nations Economic and Social Council's Committee of Experts on the Transport of Dangerous Goods, was published in 1956 (ST/ECA/43-E/CN.2/170). In response to developments in technology and the changing needs of users, they have been regularly amended and updated at succeeding sessions of the Committee of Experts pursuant to Resolution 645 G (XXIII) of 26 April 1957 of the Economic and Social Council and subsequent resolutions.
    [Show full text]
  • The Reaction of Aminonitriles with Aminothiols: a Way to Thiol-Containing Peptides and Nitrogen Heterocycles in the Primitive Earth Ocean
    life Article The Reaction of Aminonitriles with Aminothiols: A Way to Thiol-Containing Peptides and Nitrogen Heterocycles in the Primitive Earth Ocean Ibrahim Shalayel , Seydou Coulibaly, Kieu Dung Ly, Anne Milet and Yannick Vallée * Univ. Grenoble Alpes, CNRS, Département de Chimie Moléculaire, Campus, F-38058 Grenoble, France; [email protected] (I.S.); [email protected] (S.C.); [email protected] (K.D.L.); [email protected] (A.M.) * Correspondence: [email protected] Received: 28 September 2018; Accepted: 18 October 2018; Published: 19 October 2018 Abstract: The Strecker reaction of aldehydes with ammonia and hydrogen cyanide first leads to α-aminonitriles, which are then hydrolyzed to α-amino acids. However, before reacting with water, these aminonitriles can be trapped by aminothiols, such as cysteine or homocysteine, to give 5- or 6-membered ring heterocycles, which in turn are hydrolyzed to dipeptides. We propose that this two-step process enabled the formation of thiol-containing dipeptides in the primitive ocean. These small peptides are able to promote the formation of other peptide bonds and of heterocyclic molecules. Theoretical calculations support our experimental results. They predict that α-aminonitriles should be more reactive than other nitriles, and that imidazoles should be formed from transiently formed amidinonitriles. Overall, this set of reactions delineates a possible early stage of the development of organic chemistry, hence of life, on Earth dominated by nitriles and thiol-rich peptides (TRP). Keywords: origin of life; prebiotic chemistry; thiol-rich peptides; cysteine; aminonitriles; imidazoles 1. Introduction In ribosomes, peptide bonds are formed by the reaction of the amine group of an amino acid with an ester function.
    [Show full text]
  • Temporal and Spacial Variation of the Organic Particles in the Proto-Solar
    46th Lunar and Planetary Science Conference (2015) 2591.pdf TEMPORAL AND SPATIAL VARIATION OF THE ORGANIC PARTICLES IN THE PROTO-SOLAR DISK M. Numata1 and H. Nagahara1, 1Department of Earth and Planetary Science, the University of Tokyo Introduction: More than 80 distinct amino acids Model: We calculate evolution of a viscous disk are discovered in meteorites, which, in addition to their with special interests on the location of individual precursors, are suggested to be extraterrestrial origin particles-in order to know the chemical change of (e.g., [1-3]). Even the detection of glycine, the simplest organic materials. The disk evolution model and amino acid, has been claimed in samples from comet particle-tracking model by Ciesla [12, 13] were applied. 81P/Wild 2 returned by NASA’s Stardust spacecraft Disk temperature is determined by balancing vertical [4]. These discoveries suggest that interstellar energy flux assuming that all of the energy dissipation chemistry can produce such complex molecules. occurs at the midplane [14]. We use alpha-prescription Motivated by these studies, some observational search of Shakura & Sunyaev [15] for viscosity. for complex molecules in the interstellar medium The initial gas density is assumed to distribute as a reported to detect acetic acid [5], acetamide [6], self-similar solution [16] and particles containing aminoacetonitrile [7], and ethyl formate [8] in organic materials are released at each 10AU from 10A Sagittarius B2 molecular cloud. More recently, ALMA to 100AU at t = 0. Disk vertical temperature gradient is observation is expected to find more complexity of neglected. Particles are supposed to be small enough to such organic materials [9].
    [Show full text]
  • Diaminomaleonitrile
    PREBIOLOGICAL PROTEIN SYNTHESIS BY CLIFFORD N. MATTHEWS AND ROBERT E. MOSER CENTRAL RESEARCH DEPARTMENT, MONSANTO COMPANY, ST. LOUIS, MISSOURI Communicated by Charles A. Thomas, July 18, 1966 A major concern of chemical evolution research1 4 is to find an answer to the question: How were proteins originally formed on Earth before the appearance of life? A widely held view stimulated by the speculations of Oparin,5 Haldane,6 Bernal,7 and Urey8 is that the formation of polypeptides occurred via two essential steps, a-amino acid synthesis initiated by the action of natural high-energy sources on the components of a reducing atmosphere, followed by polycondensations in the oceans or on land. The results of a dozen years of simulation experiments1-4 appear to support this view. Experiments in which high-energy radiations were applied to reduced mixtures of gases have yielded many of the 20 a-amino acids commonly found in proteins. The pioneering research of M\iller9 showed that glycine, alanine, aspartic acid, and glutamic acid were among the products obtained by passing electric discharges through a refluxing mixture of hydrogen, methane, ammonia, and water. Exten- sions of these studies by Abelson10 and others'-4 showed that a-amino acid synthesis could be effected by almost any source of high energy so long as the starting mix- ture contained water and was reducing. Since mechanism studies by Miller9 indicated that aldehydes and hydrogen cyanide were transient intermediates during the course of the reaction, it was concluded that the a-amino acids were formed by the well-known Strecker route involving hydrolysis of aminoacetonitriles arising from the interactions of aldehydes, hydrogen cyanide, and ammonia.
    [Show full text]
  • Carbon Tetrachloride
    CARBON TETRACHLORIDE Data were last reviewed in IARC (1979) and the compound was classified in IARC Monographs Supplement 7 (1987a). 1. Exposure Data 1.1 Chemical and physical data 1.1.1 Nomenclature Chem. Abstr. Serv. Reg. No.: 56-23-5 Chem. Abstr. Name: Tetrachloromethane IUPAC Systematic Name: Carbon tetrachloride Synonyms: Benzinoform; carbona 1.1.2 Structural and molecular formulae and relative molecular mass Cl Cl CCl Cl CCl4 Relative molecular mass: 153.82 1.1.3 Chemical and physical properties of the pure substance (a) Description: Colourless, clear, nonflammable, liquid with a characteristic odour (Budavari, 1996) (b) Boiling-point: 76.8°C (Lide, 1997) (c) Melting-point: –23°C (Lide, 1997) (d) Solubility: Very slightly soluble in water (0.05% by volume); miscible with benzene, chloroform, diethyl ether, carbon disulfide and ethanol (Budavari, 1996) (e) Vapour pressure: 12 kPa at 20°C; relative vapour density (air = 1), 5.3 at the boiling-point (American Conference of Governmental Industrial Hygienists, 1991) (f) Conversion factor: mg/m3 = 6.3 × ppm 1.2 Production and use Production in the United States in 1991 was reported to be approximately 143 thousand tonnes (United States International Trade Commission, 1993). Information –401– 402 IARC MONOGRAPHS VOLUME 71 available in 1995 indicated that carbon tetrachloride was produced in 24 countries (Che- mical Information Services, 1995). Carbon tetrachloride is used in the synthesis of chlorinated organic compounds, including chlorofluorocarbon refrigerants. It is also used as an agricultural fumigant and as a solvent in the production of semiconductors, in the processing of fats, oils and rubber and in laboratory applications (Lewis, 1993; Kauppinen et al., 1998).
    [Show full text]
  • Aminoacetonitrile Characterization in Astrophysical-Like Conditions
    A&A 541, A114 (2012) Astronomy DOI: 10.1051/0004-6361/201218949 & c ESO 2012 Astrophysics Aminoacetonitrile characterization in astrophysical-like conditions F. Borget, G. Danger, F. Duvernay, M. Chomat, V. Vinogradoff, P. Theulé, and T. Chiavassa Aix-Marseille Université et CNRS, Laboratoire de Physique des Interactions Ioniques et Moléculaires, UMR 7345, Centre de St-Jérôme, case 252, Avenue Escadrille Normandie-Niémen, 13397 Marseille Cedex 20, France e-mail: [email protected] Received 2 February 2012 / Accepted 23 March 2012 ABSTRACT Context. Aminoacetonitrile (AAN) has been detected in 2008 in the hot core SgrB2. This molecule is of particular interest because it is a central molecule in the Strecker synthesis of amino acids. This molecule can be formed from methanimine (CH2NH), ammonia (NH3) and hydrogen cyanide (HCN) in astrophysical icy conditions. Nevertheless, few studies exist about its infrared (IR) identifica- tion or its astrophysical characterization. Aims. We present in this study a characterization of the pure solid AAN and when it is diluted in water to study the influence of H2O on the main IR features of AAN. The reactivity with CO2 and its photoreactivity are also studied and the main products were characterized. Methods. Fourier transformed infrared (FTIR) spectroscopy of AAN molecular ice was performed in the 10–300 K temperature range. We used temperature-programmed desorption coupled with mass spectrometry detection techniques to evaluate the desorption energy value. The influence of water was studied by quantitative FTIR spectroscopy and the main reaction and photochemical products were identified by FTIR spectroscopy. Results. We determined that in our experimental conditions, the IR limit of AAN detection in the water ice is about 1 × 1016 molecule cm−2, which means that the AAN detection is almost impossible within the icy mantle of interstellar grains.
    [Show full text]
  • Safety Data Sheet
    SAFETY DATA SHEET Revision Date 04-Feb-2021 Revision Number 2 SECTION 1: IDENTIFICATION OF THE SUBSTANCE/MIXTURE AND OF THE COMPANY/UNDERTAKING 1.1. Product identifier Product Description: Aminoacetonitrile hydrochloride Cat No. : 41984 Synonyms Glycinonitrile Hydrochloride. CAS-No 6011-14-9 EC-No. 227-865-9 Molecular Formula C2H4N2.HCl Reach Registration Number - 1.2. Relevant identified uses of the substance or mixture and uses advised against Recommended Use Laboratory chemicals. Uses advised against No Information available 1.3. Details of the supplier of the safety data sheet Company Alfa Aesar . Avocado Research Chemicals, Ltd. Shore Road Port of Heysham Industrial Park Heysham, Lancashire LA3 2XY United Kingdom Office Tel: +44 (0) 1524 850506 Office Fax: +44 (0) 1524 850608 E-mail address [email protected] www.alfa.com Product Safety Department 1.4. Emergency telephone number Call Carechem 24 at +44 (0) 1865 407333 (English only); +44 (0) 1235 239670 (Multi-language) SECTION 2: HAZARDS IDENTIFICATION 2.1. Classification of the substance or mixture CLP Classification - Regulation (EC) No 1272/2008 Physical hazards Based on available data, the classification criteria are not met ______________________________________________________________________________________________ ALFAA41984 Page 1 / 10 SAFETY DATA SHEET Aminoacetonitrile hydrochloride Revision Date 04-Feb-2021 ______________________________________________________________________________________________ Health hazards Acute oral toxicity Category 3 (H301) Skin Corrosion/Irritation
    [Show full text]
  • Preparation and Characterization of the Enol of Acetamide: 1-Aminoethenol, a High-Energy Cite This: Chem
    Chemical Science View Article Online EDGE ARTICLE View Journal | View Issue Preparation and characterization of the enol of acetamide: 1-aminoethenol, a high-energy Cite this: Chem. Sci., 2020, 11,12358 † All publication charges for this article prebiotic molecule have been paid for by the Royal Society of Chemistry Artur Mardyukov, Felix Keul and Peter R. Schreiner * Amide tautomers, which constitute the higher-energy amide bond linkage, not only are key for a variety of biological but also prebiotic processes. In this work, we present the gas-phase synthesis of 1-aminoethenol, the higher-energy tautomer of acetamide, that has not been spectroscopically identified to date. The title compound was prepared by flash vacuum pyrolysis of malonamic acid and was characterized employing Received 4th September 2020 matrix isolation infrared as well as ultraviolet/visible spectroscopy. Coupled-cluster computations at the Accepted 19th October 2020 AE-CCSD(T)/cc-pVTZ level of theory support the spectroscopic assignments. Upon photolysis at l > DOI: 10.1039/d0sc04906a 270 nm, the enol rearranges to acetamide as well as ketene and ammonia. As the latter two are even rsc.li/chemical-science higher in energy, they constitute viable starting materials for formation of the title compound. Creative Commons Attribution 3.0 Unported Licence. Introduction molecules24 have been identied in the interstellar medium (ISM) through their rotational and vibrational transitions and Complex molecular structures typically form from thermody- there is evidence for the existence of larger structures that await 15,25 namically very stable and thus unreactive small molecules that their identication. The interstellar presence of (pre)biotic oen have to be transformed rst into more reactive isomers molecules suggests that these may have extraterrestrial origin 26 before they can react.
    [Show full text]
  • Dissociation Constants of Organic Acids and Bases
    DISSOCIATION CONSTANTS OF ORGANIC ACIDS AND BASES This table lists the dissociation (ionization) constants of over pKa + pKb = pKwater = 14.00 (at 25°C) 1070 organic acids, bases, and amphoteric compounds. All data apply to dilute aqueous solutions and are presented as values of Compounds are listed by molecular formula in Hill order. pKa, which is defined as the negative of the logarithm of the equi- librium constant K for the reaction a References HA H+ + A- 1. Perrin, D. D., Dissociation Constants of Organic Bases in Aqueous i.e., Solution, Butterworths, London, 1965; Supplement, 1972. 2. Serjeant, E. P., and Dempsey, B., Ionization Constants of Organic Acids + - Ka = [H ][A ]/[HA] in Aqueous Solution, Pergamon, Oxford, 1979. 3. Albert, A., “Ionization Constants of Heterocyclic Substances”, in where [H+], etc. represent the concentrations of the respective Katritzky, A. R., Ed., Physical Methods in Heterocyclic Chemistry, - species in mol/L. It follows that pKa = pH + log[HA] – log[A ], so Academic Press, New York, 1963. 4. Sober, H.A., Ed., CRC Handbook of Biochemistry, CRC Press, Boca that a solution with 50% dissociation has pH equal to the pKa of the acid. Raton, FL, 1968. 5. Perrin, D. D., Dempsey, B., and Serjeant, E. P., pK Prediction for Data for bases are presented as pK values for the conjugate acid, a a Organic Acids and Bases, Chapman and Hall, London, 1981. i.e., for the reaction 6. Albert, A., and Serjeant, E. P., The Determination of Ionization + + Constants, Third Edition, Chapman and Hall, London, 1984. BH H + B 7. Budavari, S., Ed., The Merck Index, Twelth Edition, Merck & Co., Whitehouse Station, NJ, 1996.
    [Show full text]
  • Bernstein, MP, Sandford, SA Mattioda, AL, Allamandola, LJ
    Here is an almost complete list of Max’s publications: Bernstein, M.P., Sandford, S.A. Mattioda, A.L., Allamandola, L. J. (2007) Near- and Mid-Infrared Laboratory Spectra of PAH Cations in Solid H2O ApJ, in press Elsila, J.E.; Dworkin, J.P.; Bernstein, M.P., Martin, M.P.; Sandford, S.A. (2007) Mechanisms of Amino Acid Formation in Interstellar Ice Analogs ApJ, 660, 911-918. Chaban, G.M.; Bernstein, M.P., Cruikshank, D.P. (2007) Carbon dioxide on planetary bodies: Theoretical and experimental studies of molecular complexes Icarus, 187, 592-599. Bernstein, M.P., (2006) Prebiotic materials from on and off the early Earth. Phil. Trans. R. Soc. B 361, 1689–1702. Bernstein, M.P., Cruikshank, D.P., Sandford, S.A., (2006) Near-infrared spectra of laboratory H2O CH4 ice mixtures. Icarus, 181, 302-308. Elsila, J.E., Hammond, M.R., Bernstein, M.P Sandford S.A.. Zare, Richard N. (2006) UV photolysis of quinoline in interstellar ice analogs Meteoritics, 41, 785-796. Bernstein, M.P., Cruikshank, D.P., Sandford, S.A., (2005) Near-infrared laboratory spectra of solid H2O/CO2 and CH3OH/CO2 ice mixtures. Icarus, 179, 527-534. Bernstein, M.P., Mattioda, A.L., Sandford, S.A., and Hudgins, D.M.H., (2005) Laboratory Infrared Spectra of Polycyclic Aromatic Nitrogen Heterocycles: Quinoline, and Phenanthridine in Solid Argon and H2O ApJ 626, 909-918.. Bernstein, M.P., Sandford, S.A., and Allamandola, L. J. (2005) The Mid-Infrared Absorption Spectra of Neutral PAHs in Dense Interstellar Clouds. ApJSS 161 53-64. Bernstein, M.P., Sandford, S.A., and Walker R.
    [Show full text]
  • (2H, 13C, 15N, 17O and 18O) in Genetically Encoded Amino Acids
    Molecules 2013, 18, 482-519; doi:10.3390/molecules18010482 OPEN ACCESS molecules ISSN 1420-3049 www.mdpi.com/journal/molecules Review Access to Any Site Directed Stable Isotope (2H, 13C, 15N, 17O and 18O) in Genetically Encoded Amino Acids Prativa B. S. Dawadi and Johan Lugtenburg * Leiden Institute of Chemistry, Leiden University, P.O. Box 9502, 2300 RA, Leiden, The Netherlands; E-Mail: [email protected] * Author to whom correspondence should be addressed; E-Mail: [email protected]. Received: 25 October 2012; in revised form: 10 December 2012 / Accepted: 24 December 2012 / Published: 2 January 2013 Abstract: Proteins and peptides play a preeminent role in the processes of living cells. The only way to study structure-function relationships of a protein at the atomic level without any perturbation is by using non-invasive isotope sensitive techniques with site-directed stable isotope incorporation at a predetermined amino acid residue in the protein chain. The method can be extended to study the protein chain tagged with stable isotope enriched amino acid residues at any position or combinations of positions in the system. In order to access these studies synthetic methods to prepare any possible isotopologue and isotopomer of the 22 genetically encoded amino acids have to be available. In this paper the synthetic schemes and the stable isotope enriched building blocks that are available via commercially available stable isotope enriched starting materials are described. Keywords: amino acids; isotope labelling; [5-13C]-leucine; [4-13C]-valine; 13C or 15N-enriched L-lysine; [18O]-benzylchloromethyl ether; [13C]-benzonitrile 1. Introduction Proteins and peptides play a preeminent role in living cells, such as receptor action, enzyme catalysis, transport and storage, hormone action, mechanical support, immune protection, etc.
    [Show full text]
  • Chemical Segregation in Hot Cores with Disk Candidates: An
    Astronomy & Astrophysics manuscript no. Paper1Final c ESO 2018 October 27, 2018 Chemical Segregation in Hot Cores With Disk Candidates An investigation with ALMA V. Allen1; 2, F. F. S. van der Tak1; 2,, Á. Sánchez-Monge3, R. Cesaroni4, and M. T. Beltrán4 1 Kapteyn Astronomical Institute, University of Groningen, the Netherlands e-mail: [email protected], [email protected] 2 SRON, Groningen, the Netherlands 3 I. Physikalisches Institut, Köln, Germany 4 INAF, Osservatorio Astrofisico di Arcetri, Firenze, Italy Received June 2016; accepted May 2017 ABSTRACT Context. In the study of high-mass star formation, hot cores are empirically defined stages where chemically rich emission is detected toward a massive YSO. It is unknown whether the physical origin of this emission is a disk, inner envelope, or outflow cavity wall and whether the hot core stage is common to all massive stars. Aims. We investigate the chemical make up of several hot molecular cores to determine physical and chemical structure. We use high spectral and spatial resolution sub-millimeter observations to determine how this stage fits into the formation sequence of a high mass star. Methods. The sub-millimeter interferometer ALMA (Atacama Large Millimeter Array) was used to observe the G35.20-0.74N and G35.03+0.35 hot cores at 350 GHz in Cycle 0. We analyzed spectra and maps from four continuum peaks (A, B1, B2 and B3) in G35.20-0.74N, separated by 1000-2000 AU, and one continuum peak in G35.03+0.35. We made all possible line identifications across 8 GHz of spectral windows of molecular emission lines down to a 3σ line flux of 0.5 K and determined column densities and temperatures for as many as 35 species assuming local thermodynamic equilibrium (LTE).
    [Show full text]