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INSTRUCTOR: Dr. Katherine Siegler Office: CL NM 131 Phone: 791-5993 Email: [email protected] Office Hours: LSC M/W 10:45 to 12:00

ACADEMIC DEPARTMENT:

Dean: John Chapin Office Location: SE Office Number: UP-337B Phone: 727 394-6995

Academic Chair: Amanda Gilleland Office Location: SE Office Number: UP-337F Phone: 727 394-6024

Microbiology consists of the study of microorganisms and their role in our environment from a cellular and molecular point of view. Topics include microbial cell biology, microbial genetics, classification, identification, microbial control, and infectious disease. MEETING INFORMATION:

Class meets in SE-UP 325 Monday and Wednesday from 9:30 to 10:45am ATTENDANCE: Attending class and being an active participant are crucial to your success in this class. The majority of the exam material will come from notes presented in class, so regular attendance should improve your exam scores. Attendance will be taken every class period and students who miss are responsible for all work due that day as well as any material presented in class that day. If you must miss class due to a serious illness or other event, please let me know so that I am aware of the situation SPECIAL ACCOMMODATIONS:

If you wish to request accommodations as a student with a documented disability, please make an appointment with the Learning Specialist on campus. If you have a documented hearing loss, please contact the Program for the Deaf/Hard of Hearing at 791-2628. If you need assistance during an emergency classroom evacuation, please contact your campus learning specialist immediately about arrangements for your safety. The Office of Services for Students with Disabilities can be reached at 791-2628 or 791-2710 (CL), 341-4758 (SP/G), 394-6108 (SE) 712-5789 (TS) or 341-4532 (AC).

COURSE GOALS: 1. The student will demonstrate an understanding of microbial cell biology and microbial function in various environments

2. The student will gain and understanding of microbial genetics.

3. The student will demonstrate an understanding of microbial interactions and the impact of microorganisms on humans.

COURSE OBJECTIVES: 1. The student will demonstrate an understanding of microbial cell biology and microbial function in various environments by:

a. identifying, comparing, and contrasting Prokaryotic microbes, Eukaryotic microbes, and subcellular viruses and other agents on the basis of structure and function.

b. explaining the information flow within a cell and the regulation of cellular activity.

c. identifying and summarizing cell energy metabolism , growth, and reproduction.

d. characterizing, identifying, and classifying selected microorganisms.

e. recognizing microbial diversity.

f. defining phylogeny and evaluating current theories of microbial evolution.

g. describing microbial interactions and their impact on the environment such as adaptation, natural selection, microbial recycling, and bioremediation.

2. The student will demonstrate an understanding of microbial genetics by:

a. explaining the processes of replication, transcription and translation.

b. illustrating, through case studies or examples, the central molecular framework of biology; that is, DNARNAproteintrait.

c. identifying cause, consequence, and uses of mutation.

d. explaining exchange and acquisition of genetic information.

e. discussing the role of plasmid DNA in antibiotic resistance

3. The student will demonstrate an understanding of microbial interactions and the impact of microorganisms on humans by:

a. discussing selected historical events and their relationship to microbiology.

b. explaining the relationships in various ecological situations including normal microbiota, pathogenicity, infection, food intoxications symbiosis, and parasitism.

c. evaluating host defense mechanisms in relation to microbial pathogenicity mechanisms

d. characterizing the mode of action and side effects of antimicrobial drugs and chemotherapy.

e. defining and examining biotechnology and methods of genetic engineering.

f. working individually or in groups to solve case studies or problems related to infectious disease and the concepts of microbial control PREREQUISITES : Prerequisite: (BSC 1086 and BSC 1086L) or (BSC 2010 and BSC 2010L). Corequisite: MCB 2010L.

GRADING: Grading System: Grading Scale: 3 Lecture Exams (100pts each) 300 90-100% = A (630-700) 1 Final Exam (100pts) 100 80-89% = B (560-629) Homework 200 70-79% = C (490-559) Group Presentations 50 60-69% = D (420-489) Attendance 50 below 60% = F (below 420)

Total Points: 700

Exams: The lecture exams will primarily focus on material presented in lecture with some reading material included from your text book (main emphasis will be on lecture material). The exams will consist of a combination of multiple choice, short answer and essay questions. The Final Exam will consist of questions from the last lecture material as well as a comprehensive portion. If you are more than 10 minutes late for an exam you will not be able to take the exam that day. There is a 10% penalty for taking exams late.

Homework: For each chapter you will complete a pre-class assignment that will require submission of a written component prior to class. The assignment must be uploaded into the appropriate Turn It In dropbox one hour prior to the scheduled class time (8:30 AM).

Group Presentations: Within the first month of classes you will select a topic with your fellow classmates for a group presentation. Group size will depend on total enrollment of the class at the time the groups are made up. This presentation HAS TO BE POWER POINT and should be 10-15 minutes long. In addition to the Oral presentation, a SHORT write up of the topic is also required. If during the course of the semester you are not interacting with your fellow group mates to put together this presentation I will require you to write a 10 page, single spaced, APA formatted term paper instead of participating in the group project.

Attendance: Attendance points are determined as follows: 50 points: 27 to 30 classes attended 25 points: 23 to 26 classes attended 0 points: less than 23 classes attended

Make-up Exams: Any student missing a lecture exam may take a make-up provided they have a legitimate excuse for missing class (i.e. severe illness with doctor’s note, family emergency). All scores on make-up exams will be reduced by 10% each time you need to take one. This penalty applies to ANYONE taking a make-up, No Exceptions! The 10% penalty is additive, so the first make-up is -10%, the 2nd -20%, the 3rd -30% etc… Make- up exams must be taken within one week of the original test date and note that make-up exams may be of a different format than the original.

Grades Changes: Please follow the guidelines listed below if you feel that an answer on an exam, quiz, homework, or other assignment has been erroneously marked incorrect. I will give you back your exam with written corrections. 1) Please circle the answer in question and return to me within one week from the day you receive the assignment/exam back. 2) I will review the appropriate answers and determine if your grade needs to be adjusted. I will return your assignment/exam back to you within one week from the time you give it to me. 3) The time frame therefore for changing a grade on any given assignment is TWO WEEKS. If for some reason you are ill or otherwise engaged, you may make an appointment with me, but the appointment needs to be made within the two week time frame.

Please do not ask me during class time to review your papers for a grade change as there is no time for me to assess the situation while in class.

Classroom Behavior: Success in this and any college class requires good note taking, test taking, and study skills. Please ask me for assistance with any of these areas. Do not wait until mid-term before trying to improve your work. Start asking questions and looking for help early on if you need it. In addition, attending class means more than just showing up. Come prepared to take notes, ask questions, and listen. Please be considerate of other students as well as myself during lecture. It is distracting to hear someone talking or laughing during lecture so please refrain from side conversations during lecture. Students who continue to cause disruptions in class will be asked to leave the classroom. For more detailed information on proper student conduct please see the code of conduct in your course catalog.

Please turn off all beepers and cell phones while in class except for answering Kahoot questions. Cell phones going off during class are a distraction during lecture and exams. You will be given one warning if your cell phone goes off during class before being asked to leave class for that period. If you need to use your phone please do so outside class even if this is during a break time.

Finally, coming late to class is distracting to me and, more importantly, your fellow students so please be on time for all class meetings. In addition, missing the first 10 minutes of class means you will miss important announcements about the schedule, assignments, quizzes, etc. If you do arrive late please enter the class and take your seat quietly. Do not ask students or myself questions at this time or copy notes that you missed. You can ask questions or copy notes after class.

Anyone arriving more than 10 minutes late for an exam will be asked to leave and will have to take the exam late with the 10% penalty as per the make-up exam policy. For more detailed information on proper student conduct please see the code of conduct in your course catalog.

ACADEMIC HONESTY:

St. Petersburg College has an academic honesty policy. It is your responsibility to be familiar with the policies, rules and consequences of violations. Read about the policy at: https://www.spcollege.edu/academichonesty/. There is no tolerance for cheating and academic dishonesty. The penalty can range from a zero on that assignment or exam to a grade of F in the class.

TEXTBOOK INFORMATION: Text: Microbiology Fundamentals (A clinical Approach, 2nd edition) By: Marjorie Kelly Cowan ISBN 9781259293160

IMPORTANT DATES: Course Dates: 8/15/16 to 12/9/16 Drop/Add: 8/19/16 Last Day to receive a W: 10/20/16 Final exams 12/5 to 12/8/16 Academic calendar: https://www.spcollege.edu/calendar/ Financial Aid: http://www.spcollege.edu/getfunds/

After reading this syllabus, read the below signature page, sign it (type your name) and upload it into the dropbox in MyCourses by the end of the second week of class (August 26, 2016)

Signature Page

I have read, understand, and agree to abide fully by the parameters set in this syllabus and Syllabus Addendum.

Student Signature: Date: . MCB2010 Tentative Lecture Schedule – Fall 2016 Section (2764) SE-UP325 M/W 9:30 – 10:45

Lec Date Topic Chapte r 1 8/15 Introduction to the Class 2 8/17 Introduction to Microbes and Their building Blocks 1 3 8/22 Prokaryotic Cell Structure 3 4 8/24 Eukaryotic Cell Structure 4 5 8/29 Viral Structure and Life Cycles 5 6 8/31 Microbial Nutrition and Growth 6 9/5 Labor Day – No Class 7 9/7 EXAM 1 (chapters 1, 3-5) 8 9/12 Microbial Metabolism 7 9 9/14 Microbial Genetics and Genetic engineering 8 10 9/19 Physical and Chemical Control of Microbes 9 11 9/21 Antimicrobial Treatment 10 12 9/26 EXAM 2 (Chapters 6-10) 13 9/28 Interactions between Microbes and Humans 11 14 10/3 Host Defenses I: Overview and Nonspecific Defenses 12 15 10/5 Host Defenses II: Specific Immunity and Immunization 13 16 10/10 Host Defenses II: Specific Immunity and Immunization ” 17 10/12 Disorders in Immunity 14 18 10/17 EXAM 3 (Chapters 11-14) 19 10/19 Diagnosing Infections 15 20 10/24 Infectious Diseases affecting the Skin and Eyes 16 21 10/26 Infectious Diseases affecting the Nervous System 17 22 10/31 Cardiovascular and Lymphatic Systems 18 23 11/2 Infectious Diseases affecting the Respiratory System 19 24 11/7 Infectious Diseases affecting the Gastrointestinal Tract 20 25 11/9 Infectious Diseases affecting the Genitourinary System 21 26 11/14 One Health 22 27 11/16 Student Group Presentations 28 11/21 Student Group Presentations 11/24 Thanksgiving – No Class 29 11/28 Student Group Presentations 30 11/30 Exam Review 12/5 Final Exam-COMPREHENSIVE 10:00 – 11:50 PM