04/13/2010 Meeting to discuss MD Anderson’s issues Attendees: Mayo Troy Bleeker Craig Stancl Kevin Peterson Scott Bauer MD Anderson Eric Schripsema Bryan Lari Nick Collins Sina Madani Cecil Lynch

Action items: Kevin: Provide and example of creating the proper URI. Bryan: Send an email about the Pick-list and value domain questions they have.

They are up and running. They are now running the loads and those are working. RHEL, Oracle 11g, Java 1.6, 8GB RAM They thanked us for helping them get to this point. All RRF Ontologies are successfully loading like SNOMED, LOINC, ICD9, …

Gforge Issue Issue Summary Current Status # 26882 LexEVS 5.1 Loading Issues Closed - Fix provided 26883 Support for Java 1.6 Closed - Testing complete Closed - We provided NCI’s VM stack virtual image configuration, no faults 26884 Seg fault on Red Hat 64 bit appear with the latest release Closed - Fix provided 26885 Test errors with Oracle 11g (26741), tests successful Oracle related JUnit errors Closed - Fix provided 26741 3.2 in this issue is the OWL loader error (related to 26885) Closed - 26702 opened in 6.0 bug tracking, closing this 26886 Hibernate mappings for Oracle CLOB issue Open - bug created for 26702 Hibernate mappings for Oracle CLOB future release LexEVS 6.0 Deferred - Out of current 26887 Web service error scope (.Net) 26888 OWL loader mishandles annotations Closed - Handled via 26741 Closed - RXNORM files RXNORM Load fails when loading from provided to them, load 27179 Complete UMLS successful Closed - Unreproducible using default settings for metamorphosis, not tested by MD Anderson yet, now they are not changing the data since other errors are not happening so this is mute, this is not recommended by VKC 27441 Validation of UTF-8 subset anyway Closed - We pointed them to MDA - LexEVS 5.1 NCI Thesaurus the proper NCIt (inferred 27535 Loading Issues version), test successful 2 MDA - LexEVS 5.1 ICD terminology Closed - all RRF is working 27536 family loading issues now MDA - LexEVS 5.1 RRF UTF-8 Closed - all RRF is working 27537 Loading Issues now MDA - LexEVS 5.1 CTCAE Loading Closed - all RRF is working 27538 Issues now

OWL version of SNOMED is not working, but this is expected

Q: If loading an OWL and need a relationship to an ontology not load as OWL. A: Mapping is not a function available until LexEVS 6.0.

Q: Can we create a fully qualified URI that OWL won’t complain about? How do I map the non URI namespace into a URI properly? A: Yes, use “supported namespaces” in OWL. The database has the information that you need. We are not sure with time running out that we understood one another. A Gforge item will be created to make sure this is answered.

We agreed that now we are through the bring-up and we will shift to on-demand meetings not every other week.