Sequence Determined in the Frame of This Study
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Supplementary Table 1. Bacterial strains investigated in this study, including strains for which sequences were taken from GenBank.
Some mdh sequences are from the corresponding subcultures. In that case, the number of the sequenced strain is given between brackets.
Accessionnumber Strain Host Origin mdh gyrB infB rpoB Pectobacterium aroidearum DAPP-PG 753 Solanum tuberosum Lebanon KP151645† KP151629† KP151622† KP151615† DAPP-PG 754 Solanum tuberosum Lebanon KP151646† KP151630† KP151623† KP151616† DAPP-PG 755 Solanum tuberosum Lebanon KP151647† KP151631† KP151624† KP151617† DAPP-PG 756 Solanum tuberosum Lebanon KP151648† KP151632† KP151625† KP151618† DAPP-PG 757 Solanumm tuberosum Lebanon KP151649† KP151633† KP151626† KP151619† LMG 2408 Zantedeschia aethiopica Denmark KP151650† KP151634† KP151627† KP151620† LMG 2417T Zantedeschia aethiopica South Africa HM156976 (SCRI 109T) LMG 2426 Saccharum officinarum Jamaica HM156977 (SCRI 121) NZEC210 Solanum tuberosum New Zealand GQ144366 NZEC211 Solanum tuberosum New Zealand GQ144367 SCRI 3 Solanum tuberosum Zimbabwe HM156971 PC1 Ornithogalum dubium Israel CP001657* CP001657* CP001657* CP001657* Pectobacterium atrosepticum LMG 2386T Solanum tuberosum UK GQ144373 (ICMP 1526T) JF311589 JF311702 JF311815 LMG 2388 Soil Ireland JF311591 JF311704 JF311817 LMG 2374 Apium graveolensvar. dulce UK JF311590 JF311703 JF311816 LMG 6687 Lycopersicon esculentum France JF311592 JF311705 JF311818 SCRI 1043 Solanum tuberosum UK EF550788 Pectobacterium betavasculorum LMG 2466T Beta vulgaris USA JN600343 (CFBP 2122T) JF311593 JF311706 JF311819 LMG 2398 Solanum tuberosum Romania JF311594 JF311707 JF311820 LMG 2461 Beta vulgaris USA JF311595 JF311708 JF311821 LMG 6681 Beta vulgaris USA JF311596 JF311709 JF311822 Pectobacterium cacticida LMG 17936T Carnegiea gigantea USA JF311597 JF311710 JF311823 LMG 2721 Carnegiea gigantea USA JF311599 JF311712 JF311825 LMG 2722 Carnegiea gigantea USA JF311600 JF311713 JF311826 LMG 2720 Carnegiea gigantea Arizona, USA JF311598 JF311711 JF311824 Pectobacterium carotovorum subsp. brasiliense LMG 21371T Solanum tuberosum Brazil JF926799 (Ecbr212T) JF311605 JF311718 JF311830 LMG 21370 Solanum tuberosum Brazil JF311606 JF311719 JF311831 LMG 21373 Solanum tuberosum Brazil JF926800 (Ecbr371) SCRI 132 Solanum tuberosum HM156978 Pectobacterium carotovorum subsp. carotovorum LMG 2404T Solanum tuberosum Denmark GQ144372 (ICMP 5702T) JF311601 JF311714 HM359006 DAPP-PG 752 Solanum tuberosum Lebanon KP151644† KR558756† KR558757† KR558758† NZEC 118 Solanum tuberosum New Zealand GQ144384 Ecc 21 Solanum tuberosum The Netherlands EF550779 Ecc 193 Solanum tuberosum USA EF550782 WPP14 Solanum tuberosum USA EF550761 WPP236 Arctium minus USA EF550808 Pectobacterium carotovorum subsp. odoriferum LMG 17566T Cichorium intybus France GQ144370 (ICMP 11533T) JF311607 JF311720 JF311832 JKI 582 Cichorium endivia Switzerland HM156980 Pectobacterium wasabiae LMG 8444T Solanum tuberosum Japan GQ144371 (ICMP 9121T) JF311608 JF311721 JF311833 WPP 19 Solanum tuberosum USA EF550760 WPP 163 Solanum tuberosum USA EF550794 WPP 172 Solanum tuberosum USA EF550809 LMG 25889 Solanum tuberosum Japan JF311609 JF311722 JF311834 LMG 25890 Solanum tuberosum New Zealand JF311610 JF311723 JF311835 LMG 25891 Solanum tuberosum New Zealand JF311611 JF311724 JF311836 Dickeya chrysanthemi LMG 2804T Chrysanthemum morifolium USA JF311636 JF311749 JF311861 CFBP, Collection Francaise de Bactéries Phytopathogènes, France; DAPP-PG, Dipartimento di Scienze Agrarie e Ambientali, sez. Arboricoltura e Protezione delle Piante, University of Perugia (Italy); ICMP, International Collection of Microorganisms from Plants, Landcare Research, New Zealand; JKI, Julius Kühn-Institute, Dossenheim and Quedlinburg, Germany; LMG, BCCM/LMG Bacteria Collection, Belgium; SCRI, Scottisch Crop Research Institute, Dundee, UK.
†, sequence determined in the frame of this study *, whole genome sequence