First Report of Two Ark Shells, Anadara Consociata (EA Smith, 1885)
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Analysis of Synonymous Codon Usage Patterns in Sixty-Four Different Bivalve Species
Analysis of synonymous codon usage patterns in sixty-four diVerent bivalve species Marco Gerdol1, Gianluca De Moro1, Paola Venier2 and Alberto Pallavicini1 1 Department of Life Sciences, University of Trieste, Trieste, Italy 2 Department of Biology, University of Padova, Padova, Italy ABSTRACT Synonymous codon usage bias (CUB) is a defined as the non-random usage of codons encoding the same amino acid across diVerent genomes. This phenomenon is common to all organisms and the real weight of the many factors involved in its shaping still remains to be fully determined. So far, relatively little attention has been put in the analysis of CUB in bivalve mollusks due to the limited genomic data available. Taking advantage of the massive sequence data generated from next generation sequencing projects, we explored codon preferences in 64 diVerent species pertaining to the six major evolutionary lineages in Bivalvia. We detected remarkable diVerences across species, which are only partially dependent on phylogeny. While the intensity of CUB is mild in most organisms, a heterogeneous group of species (including Arcida and Mytilida, among the others) display higher bias and a strong preference for AT-ending codons. We show that the relative strength and direction of mutational bias, selection for translational eYciency and for translational accuracy contribute to the establishment of synonymous codon usage in bivalves. Although many aspects underlying bivalve CUB still remain obscure, we provide for the first time an overview of this phenomenon -
Diversity of Malacofauna from the Paleru and Moosy Backwaters Of
Journal of Entomology and Zoology Studies 2017; 5(4): 881-887 E-ISSN: 2320-7078 P-ISSN: 2349-6800 JEZS 2017; 5(4): 881-887 Diversity of Malacofauna from the Paleru and © 2017 JEZS Moosy backwaters of Prakasam district, Received: 22-05-2017 Accepted: 23-06-2017 Andhra Pradesh, India Darwin Ch. Department of Zoology and Aquaculture, Acharya Darwin Ch. and P Padmavathi Nagarjuna University Nagarjuna Nagar, Abstract Andhra Pradesh, India Among the various groups represented in the macrobenthic fauna of the Bay of Bengal at Prakasam P Padmavathi district, Andhra Pradesh, India, molluscs were the dominant group. Molluscs were exploited for Department of Zoology and industrial, edible and ornamental purposes and their extensive use has been reported way back from time Aquaculture, Acharya immemorial. Hence the present study was focused to investigate the diversity of Molluscan fauna along Nagarjuna University the Paleru and Moosy backwaters of Prakasam district during 2016-17 as these backwaters are not so far Nagarjuna Nagar, explored for malacofauna. A total of 23 species of molluscs (16 species of gastropods belonging to 12 Andhra Pradesh, India families and 7 species of bivalves representing 5 families) have been reported in the present study. Among these, gastropods such as Umbonium vestiarium, Telescopium telescopium and Pirenella cingulata, and bivalves like Crassostrea madrasensis and Meretrix meretrix are found to be the most dominant species in these backwaters. Keywords: Malacofauna, diversity, gastropods, bivalves, backwaters 1. Introduction Molluscans are the second largest phylum next to Arthropoda with estimates of 80,000- 100,000 described species [1]. These animals are soft bodied and are extremely diversified in shape and colour. -
New Report and Taxonomic Comparison of Anadara and Tegillarca Species of Arcidae (Bivalvia: Arcoidea) from Southern Coast of India
International Journal of Science and Research (IJSR) ISSN (Online): 2319-7064 Index Copernicus Value (2013): 6.14 | Impact Factor (2013): 4.438 New Report and Taxonomic Comparison of Anadara and Tegillarca Species of Arcidae (Bivalvia: Arcoidea) from Southern Coast of India Souji.S1, Tresa Radhakrishnan2 Department of Aquatic Biology and Fisheries, University of Kerala, Thiruvananthapuram-695 581, Kariyavattom, Kerala, India Abstract: Arcacea family is economically important group of animals. Most of the species in this family are misplaced into invalid subgenera and Indian arcids are wanted a revision in systematic positon. In the case of Arcidae family; all of the species are treated under Anadara as main genera, however, some authors considered that the Tegillarca genus is only a sub genus of Arcidae family. Anadara is the commercially important genus of bivalves of Arcidae family. These two genera are confused by many taxonomists and some considered that the morphometric changes of Tegillarca are only the habitual adaptation. But the collected samples from the same habitat from the southern part of India is clearly demarked the distinction between Anadara species and Tegillarca species. In this paper the differences between these two genera are illustrated with the help of specimens from the same habitat and with the help of taxonomic literature of these genera. Species level classification was done based on the morphometric characters like peculiarities of (i) periostracum, (ii) cardinal area, (iii) umbo, (iv) adductor muscle scar and (v) pallial line. The specimens were collected from Neendakara, Vizhinjam and Kovalam along with the south west coast and Thiruchendur in Tamil Nadu, south east coast of India. -
Monda Y , March 22, 2021
NATIONAL SHELLFISHERIES ASSOCIATION Program and Abstracts of the 113th Annual Meeting March 22 − 25, 2021 Global Edition @ http://shellfish21.com Follow on Social Media: #shellfish21 NSA 113th ANNUAL MEETING (virtual) National Shellfisheries Association March 22—March 25, 2021 MONDAY, MARCH 22, 2021 DAILY MEETING UPDATE (LIVE) 8:00 AM Gulf of Maine Gulf of Maine Gulf of Mexico Puget Sound Chesapeake Bay Monterey Bay SHELLFISH ONE HEALTH: SHELLFISH AQUACULTURE EPIGENOMES & 8:30-10:30 AM CEPHALOPODS OYSTER I RESTORATION & BUSINESS & MICROBIOMES: FROM SOIL CONSERVATION ECONOMICS TO PEOPLE WORKSHOP 10:30-10:45 AM MORNING BREAK THE SEA GRANT SHELLFISH ONE HEALTH: EPIGENOMES COVID-19 RESPONSE GENERAL 10:45-1:00 PM OYSTER I RESTORATION & & MICROBIOMES: FROM SOIL TO THE NEEDS OF THE CONTRIBUTED I CONSERVATION TO PEOPLE WORKSHOP SHELLFISH INDUSTRY 1:00-1:30 PM LUNCH BREAK WITH SPONSOR & TRADESHOW PRESENTATIONS PLENARY LECTURE: Roger Mann (Virginia Institute of Marine Science, USA) (LIVE) 1:30-2:30 PM Chesapeake Bay EASTERN OYSTER SHELLFISH ONE HEALTH: EPIGENOMES 2:30-3:45 PM GENOME CONSORTIUM BLUE CRABS VIBRIO RESTORATION & & MICROBIOMES: FROM SOIL WORKSHOP CONSERVATION TO PEOPLE WORKSHOP BLUE CRAB GENOMICS EASTERN OYSTER & TRANSCRIPTOMICS: SHELLFISH ONE HEALTH: EPIGENOMES 3:45–5:45 PM GENOME CONSORTIUM THE PROGRAM OF THE VIBRIO RESTORATION & & MICROBIOMES: FROM SOIL WORKSHOP BLUE CRAB GENOME CONSERVATION TO PEOPLE WORKSHOP PROJECT TUESDAY, MARCH 23, 2021 DAILY MEETING UPDATE (LIVE) 8:00 AM Gulf of Maine Gulf of Maine Gulf of Mexico Puget Sound -
Expression of Glutamine Synthetase in Tegillarca Granosa (Bivalvia, Arcidae) Hemocytes Stimulated by Vibrio Parahaemolyticus and Lipopolysaccharides
Expression of glutamine synthetase in Tegillarca granosa (Bivalvia, Arcidae) hemocytes stimulated by Vibrio parahaemolyticus and lipopolysaccharides Y.B. Bao1, L. Li2, M.X. Ye1, Y.H. Dong1, W.X. Jin1 and Z.H. Lin1 1College of Biological and Environmental Sciences, Zhejiang Wanli University, Ningbo, Zhejiang, China 2Institute of Oceanology, Chinese Academy of Sciences, Qingdao, Shandong, China Corresponding authors: Z.H. Lin / Y.B. Bao E-mail: [email protected] / [email protected] Genet. Mol. Res. 12 (2): 1143-1154 (2013) Received July 27, 2012 Accepted October 9, 2012 Published April 10, 2013 DOI http://dx.doi.org/10.4238/2013.April.10.9 ABSTRACT. The blood cockle, Tegillarca granosa, is a widely consumed clam in the Indo-Pacific region. Glutamine synthetase (GS) is an enzyme that plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. We identified the GS ofT. granosa (Tg-GS) from hemocytes by 3'- and 5'-rapid amplification of cDNA ends (RACE)-PCR. The full- length cDNA consisted of 1762 bp, with a 1104-bp open reading frame encoding 367 amino acids. Sequence comparison showed that Tg-GS has homology to GS of other organisms, with 79.78% identity with GS from the Pacific oyster Crassostrea gigas, 71.98% identity with GS from the zebrafishDanio rerio, and 68.96% identity with human Homo sapiens GS. A C-beta-Grasp domain and an N-catalytic domain were identified in Tg-GS, indicating that Tg-GS should be classified as a new member of the GS family. A quantitative RT-PCR assay was used to detect mRNA expression of Tg-GS in fivedifferent tissues. -
Marine Ecology Progress Series 452:119
Vol. 452: 119–130, 2012 MARINE ECOLOGY PROGRESS SERIES Published April 25 doi: 10.3354/meps09624 Mar Ecol Prog Ser Phylogeography of the bivalve Tegillarca granosa in coastal China: implications for management and conservation Gang Ni, Qi Li*, Lingfeng Kong, Xiaodong Zheng The Key Laboratory of Mariculture, Ministry of Education, Ocean University of China, Qingdao 266003, PR China ABSTRACT: Present genetic patterns of marine organisms not only result from historical and con- temporary ecological factors, but also from anthropogenic activities. Disentangling the relative effects of these factors can provide valuable insights into management and protection of exploitable species. The commercially important marine clam Tegillarca granosa is representative of species that are translocated within East Asia for coastal aquaculture purposes. We conducted a nucleotide sequence analysis of mitochondrial cytochrome c oxidase subunit I and nuclear inter- nal transcribed spacer 1 markers in T. granosa to investigate its genetic diversity and distribution in 2 marginal seas (the East and South China Seas) of the northwestern Pacific. Based on phyloge- netic inferences, we identified 2 evolutionarily significant units (ESUs) with high genetic distance between them for both markers. The high genetic distance may be associated with the historical isolation of the marginal seas during low sea level periods. One ESU was widely distributed in both seas, whereas the other was restricted to 2 disjunct localities in the South China Sea. Based on the isolation by distance analysis (p = 0.068) and comparison of patterns of co-occurring spe- cies, this pattern appears to be mostly attributable to the human-mediated translocations among coastal waters rather than natural range expansion. -
Population Dynamics of the Comb Pen Shell Atrina Pectinata
Philippine Journal of Science 150 (3): 1051-1060, June 2021 ISSN 0031 - 7683 Date Received: 21 Dec 2020 Population Dynamics of the Comb Pen Shell Atrina pectinata (Linnaeus, 1767) (Mollusca, Bivalvia: Pinnidae) Collected by Diving from Shallow Areas of the Southwest Visayan Sea, Northeastern Panay Island, Philippines Annabelle del Norte-Campos*, Switzel S. Lapara, and Kris Angeli S. Sanchez Marine Biology Lab, Division of Biological Sciences College of Arts and Sciences, University of Philippines Visayas Miagao, Iloilo, Philippines With the objective of determining the population dynamics of the comb pen shell (Atrina pectinata) (Mollusca, Bivalvia: Pinnidae) collected by divers in the southwest Visayan Sea, length-frequency data recorded between June 2018 and May 2019 were analyzed using the FiSAT software. von Bertalanffy growth parameters for the species were SL = 40.69 cm and K = 0.78 yr–1 the range of values for other fast-growing tropical bivalves. The estimated mean growth rate of 0.15 ± 0.05 cm d–1 likewise supports a fast growth rate and a short lifespan (< 1 yr) of the population. The recruitment pattern shows one major and minor pulse that coincides with the northeast monsoon and just prior to the southwest monsoon, respectively. Using ELEFAN II, total mortality (Z) of 2.79 yr–1 was estimated. From an averaged M/K value from the related bivalve literature (1.51) multiplied by the species’ own K, natural mortality (M) of 1.18 yr–1 was estimated, which when subtracted from the Z, gave fishing mortality (F) of 1.61 yr-1 and an exploitation rate E of 0.58, considered overexploited. -
Short Communication:Morphological and Structural Characterization Of
Iranian Journal of Fisheries Sciences 17(3) 613-619 2018 DOI: 10.22092/IJFS.2018.119523. Morphological and structural characterization of blood cells of Anadara antiquata Hameed A.1; Muhammad F.1*; Muhammad A.A.1, 2; Shafi M.3; Sultana R.4 Received: April 2017 Accepted: May 2018 Keywords: Blood cells, Morphology, Ultrastructure, Bivalvia 1-Center of Excellence in Marine Biology, University of Karachi 2-Coastal Development and Fisheries Department, Government of Balouchistan 3-Lasbella University of Agriculture, Water and Marine Sciences 4-PCSIR, Laboratory Complex Karachi *Corresponding author's Email: [email protected] Introduction information for effective management The blood cockle belongs to the genus (Gabriel et al., 2011). Anadara of family Arcidae. In Pakistan Haematological studies often A. antiquata can easily be found in provides effective and sensitive index Downloaded from jifro.ir at 0:52 +0330 on Friday October 1st 2021 Phitti Creek and Sonmiani locations to see environmental, physiological, (Jahangir et al., 2014). It has also been pathological and biochemical changes reported in Dar es Salaam, Tanzania in organism (lwama et al., 1976; (Toral-Barza and Gomez, 1985; Akinrotimi et al., 2007). Unusual Mzighani, 2005). This is a valued changes in blood profile can interpret species around the globe and rich in metabolic and health status of animals glycogen, mineral and protein. (Babatunde et al., 1992). A. antiquata carries haemoglobin Earlier investigations had shown that (Kanchanapangka et al., 2002; Gabriel blood cockles are capable of surviving et al., 2011) hence it is commonly at least one month at 20 ⁰C, in case of termed as blood cockle. -
Phylogenetic Study and Barcoding of the Blood Cockle, Tegillarca Granosa, Found on the West Coast of Peninsular Malaysia Using the COI Gene
Phylogenetic study and barcoding of the blood cockle, Tegillarca granosa, found on the west coast of peninsular Malaysia using the COI gene S.Y. Chee1, M.N. Devakie2 and M.N. Siti Azizah1 1School of Biological Sciences, Universiti Sains Malaysia, Penang, Malaysia 2Fisheries Research Institute, Batu Maung, Penang, Malaysia Corresponding author: S.Y. Chee E-mail: [email protected] Genet. Mol. Res. 10 (2): 1237-1244 (2011) Received October 14, 2010 Accepted December 10, 2010 Published June 28, 2011 DOI 10.4238/vol10-2gmr1104 ABSTRACT. Blood cockles are among the most economically im- portant brackish water invertebrates found in Malaysia. However, our knowledge of blood cockle phylogeny and systematics is rudimentary, especially for the species Tegillarca granosa. It is unclear, for instance, whether the cockles occurring on the west coast of peninsular Malaysia constitute a single species, or multiple, phylogenetically distinct spe- cies. We performed the first DNA molecular phylogenetic analysis of T. granosa to distinguish it from other related species found in other parts of the world and to create a DNA database for the species. An approximately 585-nucleotide fragment of the mitochondrial DNA (cytochrome oxidase I, COI) was sequenced for 150 individual cock- les, representing 10 populations: three from the north, four from the central part and three from the southern part of peninsular Malaysia. Phylogenetic analyses of the resulting dataset yielded tree topologies that not only showed the relationship between T. granosa and its closest relatives but its position in the evolutionary tree. Three mitochondrial clades were evident, each containing an individual genus. Using the Genetics and Molecular Research 10 (2): 1237-1244 (2011) ©FUNPEC-RP www.funpecrp.com.br S.Y. -
Abstracts of Technical Papers, Presented at the 107Th Annual Meeting, National Shellfisheries Association, Monterey, California, March 22–26, 2015
W&M ScholarWorks VIMS Articles 8-2015 Abstracts of Technical Papers, Presented at the 107th Annual Meeting, National Shellfisheries Association, Monterey, California, March 22–26, 2015 National Shellfisheries Association Follow this and additional works at: https://scholarworks.wm.edu/vimsarticles Part of the Aquaculture and Fisheries Commons Recommended Citation National Shellfisheries Association, Abstr" acts of Technical Papers, Presented at the 107th Annual Meeting, National Shellfisheries Association, Monterey, California, March 22–26, 2015" (2015). VIMS Articles. 523. https://scholarworks.wm.edu/vimsarticles/523 This Article is brought to you for free and open access by W&M ScholarWorks. It has been accepted for inclusion in VIMS Articles by an authorized administrator of W&M ScholarWorks. For more information, please contact [email protected]. Journal of Shellfish Research, Vol. 34, No. 2, 585–694, 2015. ABSTRACTS OF TECHNICAL PAPERS Presented at the 107th Annual Meeting NATIONAL SHELLFISHERIES ASSOCIATION Monterey, California March 22–26, 2015 586 Abstracts, 107th Annual Meeting, March 22–26, 2015 National Shellfisheries Association, Monterey, California CONTENTS M. Victoria Agnew, Chris Materna, Kathryn Markey, Roxanna Smolowitz THE USE OF FRESH TISSUE BIOPSY ANALYSIS TO EVALUATE TREMATODE PREVALENCE IN THE GONADS OF THE BLUE MUSSEL, MYTILUS EDULIS ........................................... 603 Dalila Aldana Aranda, Martha Enriquez Dı´az, Claire Paris-Limouzy EFFECT OF TIDE AND PHOTOPERIOD ON ABUNDANCE AND DISTRIBUTION OF LARVAE -
Ark Clams and Relatives (Bivalvia: Arcida) Show Convergent Morphological Evolution Associated With
applyparastyle “fig//caption/p[1]” parastyle “FigCapt” Biological Journal of the Linnean Society, 2019, 126, 866–884. With 7 figures. Ark clams and relatives (Bivalvia: Arcida) show convergent morphological evolution associated with lifestyle transitions in the marine benthos Downloaded from https://academic.oup.com/biolinnean/article-abstract/126/4/866/5369870 by 04860000 user on 08 April 2019 JORGE A. AUDINO1*, , JEANNE M. SERB2 and JOSÉ EDUARDO A. R. MARIAN1 1Department of Zoology, University of São Paulo, Rua do Matão, Travessa 14, n. 101, 05508-090 São Paulo, São Paulo, Brazil 2Department of Ecology, Evolution, and Organismal Biology, Iowa State University, 2200 Osborn Drive, Ames, IA 50011, USA Received 21 December 2018; revised 30 January 2019; accepted for publication 30 January 2019 One of the most intriguing puzzles in macroevolutionary studies is to understand how distantly related taxa can evolve towards similar phenotypes in response to similar ecological conditions. Ark clams and their relatives (Arcida) display two main ecologies represented by epifaunal and infaunal lifestyles. Their mantle margin includes features, such as photosensory and muscular organs, that may coincide with each habit, making these bivalves a suitable model to explore evolutionary convergence in the marine benthos. To test for the evolutionary association between lifestyles and morphology, we gathered data on the mantle margin for 64 species across all six extant arcidan families. A molecular phylogeny of Arcida was inferred based on four gene sequences from 54 species and used to study trait evolution. Our results support the hypothesis that photoreceptor organs had a single origin and that infaunal lineages lost these structures in independent events, suggesting a correlated pattern of evolution. -
The Malacological Contributions of Rudolph Amandus Philippi (1808-1904)
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/317348456 The Malacological Contributions of Rudolph Amandus Philippi (1808-1904) Article in Malacologia · June 2017 CITATIONS READS 0 29 2 authors: Alan R Kabat Eugene Victor Coan Harvard University Santa Barbara Museum of Natural H… 27 PUBLICATIONS 239 CITATIONS 165 PUBLICATIONS 1,171 CITATIONS SEE PROFILE SEE PROFILE Some of the authors of this publication are also working on these related projects: Marine Bivalve Mollusks of Western South America View project All content following this page was uploaded by Alan R Kabat on 05 June 2017. The user has requested enhancement of the downloaded file. MALACOLOGIA, 2017, 60(1−2): 31−322 THE MALACOLOGICAL CONTRIBUTIONS OF RUDOLPH AMANDUS PHILIPPI (1808–1904) Eugene V. Coan1 & Alan R. Kabat2 ABSTRACT Rudolph Amandus Philippi (known in Chile as Rodulfo Amando Philippi), was one of the longest-lived and most prolific malacologists of the 19th century, as his scientific work began in Germany in the 1830s and continued unabated until his death in Chile in 1904. Philippi contributed significantly to malacology: he described over 2,500 new taxa of Recent and fossil molluscs from around the world (2,528 species, 40 genera and three families), particularly from Italy and Chile, and discussed numerous taxa described by other authors. Philippi initially published primarily on Recent and fossil molluscs from Europe in the 1830s, then expanded to marine molluscs from around the world by the 1840s. In 1851, Philippi escaped the German Revolution by emigrating to Chile, where in 1853 he became the director of what is now the Museo Nacional de Historia Natural (Santiago) and a professor at the Universidad de Chile.