Segmented Worms (Phylum Annelida): a Celebration of Twenty Years of Progress Through Zootaxa and Call for Action on the Taxonomic Work That Remains
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Full Curriculum Vitae
C. R. Smith July 2017 Curriculum Vitae CRAIG RANDALL SMITH Address: Department of Oceanography University of Hawaii at Manoa 1000 Pope Road Honolulu, HI 96822 Telephone: 808-956-7776 email: [email protected] Education: B.S., 1977, with high honors, Biological Science, Michigan State University Ph.D., Dec 1983, Biological Oceanography, University of California at San Diego, Scripps Institution of Oceanography Professional Experience: 1975-1976: Teaching Assistant, Biological Science Program, Michigan State University 1976: Summer Student Fellow, Woods Hole Oceanographic Institution 1976-1977: Research Assistant, Microbiology Department, Michigan State University 1977-1981: Research Assistant, Program for the Study of Sub- Seabed Disposal of Radioactive Waste, Scripps Institution of Oceanography 1981-1983: Associate Investigator, O.N.R. grant entitled, "The Impact of Large Organic Falls on a Bathyal Benthic Community," Scripps Institution of Oceanography 1983-1984: Postdoctoral Scholar, Woods Hole Oceanographic Institution 1985-1986: Postdoctoral Research Associate, School of Oceanography, University of Washington 1986-1988: Research Assistant Professor, School of Oceanography, University of Washington 1988-1995: Associate Professor, Department of Oceanography, University of Hawaii at Manoa 1995-1998, 2004-2007: Chair, Biological Oceanography Division, University of Hawaii at Manoa 1997-1998, 2006-2007: Associate Chair, Department of Oceanography 1995-present: Professor, Department of Oceanography, University of Hawaii at Manoa Major Research -
Systema Naturae∗
Systema Naturae∗ c Alexey B. Shipunov v. 5.802 (June 29, 2008) 7 Regnum Monera [ Bacillus ] /Bacteria Subregnum Bacteria [ 6:8Bacillus ]1 Superphylum Posibacteria [ 6:2Bacillus ] stat.m. Phylum 1. Firmicutes [ 6Bacillus ]2 Classis 1(1). Thermotogae [ 5Thermotoga ] i.s. 2(2). Mollicutes [ 5Mycoplasma ] 3(3). Clostridia [ 5Clostridium ]3 4(4). Bacilli [ 5Bacillus ] 5(5). Symbiobacteres [ 5Symbiobacterium ] Phylum 2. Actinobacteria [ 6Actynomyces ] Classis 1(6). Actinobacteres [ 5Actinomyces ] Phylum 3. Hadobacteria [ 6Deinococcus ] sed.m. Classis 1(7). Hadobacteres [ 5Deinococcus ]4 Superphylum Negibacteria [ 6:2Rhodospirillum ] stat.m. Phylum 4. Chlorobacteria [ 6Chloroflexus ]5 Classis 1(8). Ktedonobacteres [ 5Ktedonobacter ] sed.m. 2(9). Thermomicrobia [ 5Thermomicrobium ] 3(10). Chloroflexi [ 5Chloroflexus ] ∗Only recent taxa. Viruses are not included. Abbreviations and signs: sed.m. (sedis mutabilis); stat.m. (status mutabilis): s., aut i. (superior, aut interior); i.s. (incertae sedis); sed.p. (sedis possibilis); s.str. (sensu stricto); s.l. (sensu lato); incl. (inclusum); excl. (exclusum); \quotes" for environmental groups; * (asterisk) for paraphyletic taxa; / (slash) at margins for major clades (\domains"). 1Incl. \Nanobacteria" i.s. et dubitativa, \OP11 group" i.s. 2Incl. \TM7" i.s., \OP9", \OP10". 3Incl. Dictyoglomi sed.m., Fusobacteria, Thermolithobacteria. 4= Deinococcus{Thermus. 5Incl. Thermobaculum i.s. 1 4(11). Dehalococcoidetes [ 5Dehalococcoides ] 5(12). Anaerolineae [ 5Anaerolinea ]6 Phylum 5. Cyanobacteria [ 6Nostoc ] Classis 1(13). Gloeobacteres [ 5Gloeobacter ] 2(14). Chroobacteres [ 5Chroococcus ]7 3(15). Hormogoneae [ 5Nostoc ] Phylum 6. Bacteroidobacteria [ 6Bacteroides ]8 Classis 1(16). Fibrobacteres [ 5Fibrobacter ] 2(17). Chlorobi [ 5Chlorobium ] 3(18). Salinibacteres [ 5Salinibacter ] 4(19). Bacteroidetes [ 5Bacteroides ]9 Phylum 7. Spirobacteria [ 6Spirochaeta ] Classis 1(20). Spirochaetes [ 5Spirochaeta ] s.l.10 Phylum 8. Planctobacteria [ 6Planctomyces ]11 Classis 1(21). -
New Zealand's Genetic Diversity
1.13 NEW ZEALAND’S GENETIC DIVERSITY NEW ZEALAND’S GENETIC DIVERSITY Dennis P. Gordon National Institute of Water and Atmospheric Research, Private Bag 14901, Kilbirnie, Wellington 6022, New Zealand ABSTRACT: The known genetic diversity represented by the New Zealand biota is reviewed and summarised, largely based on a recently published New Zealand inventory of biodiversity. All kingdoms and eukaryote phyla are covered, updated to refl ect the latest phylogenetic view of Eukaryota. The total known biota comprises a nominal 57 406 species (c. 48 640 described). Subtraction of the 4889 naturalised-alien species gives a biota of 52 517 native species. A minimum (the status of a number of the unnamed species is uncertain) of 27 380 (52%) of these species are endemic (cf. 26% for Fungi, 38% for all marine species, 46% for marine Animalia, 68% for all Animalia, 78% for vascular plants and 91% for terrestrial Animalia). In passing, examples are given both of the roles of the major taxa in providing ecosystem services and of the use of genetic resources in the New Zealand economy. Key words: Animalia, Chromista, freshwater, Fungi, genetic diversity, marine, New Zealand, Prokaryota, Protozoa, terrestrial. INTRODUCTION Article 10b of the CBD calls for signatories to ‘Adopt The original brief for this chapter was to review New Zealand’s measures relating to the use of biological resources [i.e. genetic genetic resources. The OECD defi nition of genetic resources resources] to avoid or minimize adverse impacts on biological is ‘genetic material of plants, animals or micro-organisms of diversity [e.g. genetic diversity]’ (my parentheses). -
Taxonomic Assessment of Lumbricidae (Oligochaeta) Earthworm Genera Using DNA Barcodes
European Journal of Soil Biology 48 (2012) 41e47 Contents lists available at SciVerse ScienceDirect European Journal of Soil Biology journal homepage: http://www.elsevier.com/locate/ejsobi Original article Taxonomic assessment of Lumbricidae (Oligochaeta) earthworm genera using DNA barcodes Marcos Pérez-Losada a,*, Rebecca Bloch b, Jesse W. Breinholt c, Markus Pfenninger b, Jorge Domínguez d a CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, Campus Agrário de Vairão, 4485-661 Vairão, Portugal b Biodiversity and Climate Research Centre, Lab Centre, Biocampus Siesmayerstraße, 60323 Frankfurt am Main, Germany c Department of Biology, Brigham Young University, Provo, UT 84602-5181, USA d Departamento de Ecoloxía e Bioloxía Animal, Universidade de Vigo, E-36310, Spain article info abstract Article history: The family Lumbricidae accounts for the most abundant earthworms in grasslands and agricultural Received 26 May 2011 ecosystems in the Paleartic region. Therefore, they are commonly used as model organisms in studies of Received in revised form soil ecology, biodiversity, biogeography, evolution, conservation, soil contamination and ecotoxicology. 14 October 2011 Despite their biological and economic importance, the taxonomic status and evolutionary relationships Accepted 14 October 2011 of several Lumbricidae genera are still under discussion. Previous studies have shown that cytochrome c Available online 30 October 2011 Handling editor: Stefan Schrader oxidase I (COI) barcode phylogenies are informative at the intrageneric level. Here we generated 19 new COI barcodes for selected Aporrectodea specimens in Pérez-Losada et al. [1] including nine species and 17 Keywords: populations, and combined them with all the COI sequences available in Genbank and Briones et al. -
Annelida, Polychaeta, Chaetopteridae), with Re- Chaetopteridae), with Re-Description of M
2 We would like to thank the Zoological Journal of the Linnean Society, The Linnean Society of London and Blackwell Publishing for accepting our manuscript entitled “Description of a Description of a new species of Mesochaetopterus (Annelida, Polychaeta, new species of Mesochaetopterus (Annelida, Polychaeta, Chaetopteridae), with re- Chaetopteridae), with re-description of M. xerecus and an approach to the description of M. xerecus and an approach to the phylogeny of the family”, which has phylogeny of the family been published in the Journal issue Zool. J. Linnean Soc. 2008, 152: 201–225. D. MARTIN1,* J. GIL1, J. CARRERAS-CARBONELL1 and M. BHAUD2 By posting this version of the manuscript (i.e. pre-printed), we agree not to sell or reproduce the Article or any part of it for commercial purposes (i.e. for monetary gain on your own 1Centre d'Estudis Avançats de Blanes (CSIC), Carrer d’accés a la Cala Sant Francesc 14, account or on that of a third party, or for indirect financial gain by a commercial entity), and 17300 Blanes (Girona), Catalunya (Spain). we expect the same from the users. 2 Observatoire Océanologique de Banyuls, Université P. et M. Curie - CNRS, BP 44, 66650 As soon as possible, we will add a link to the published version of the Article at the editors Banyuls-sur-Mer, Cedex, France. web site. * Correspondence author: Daniel Martin. Centre d'Estudis Avançats de Blanes (CSIC), Carrer Daniel Martin, Joao Gil, Michel Bhaud & Josep Carreras-Carbonell d’accés a la Cala Sant Francesc 14, 17300 Blanes (Girona), Catalunya (Spain). Tel. +34972336101; Fax: +34 972337806; E-mail: [email protected]. -
Earthworm, Suborder Crassiclitellata, Cohort Terrimegadrili (Jamieson, 1988)1 William T
Archival copy: for current recommendations see http://edis.ifas.ufl.edu or your local extension office. EENY-532 Earthworm, suborder Crassiclitellata, cohort Terrimegadrili (Jamieson, 1988)1 William T. Crow2 Introduction The term earthworm is commonly assigned to certain worms in the class Clitellata in the phylum Annelida. Like insects, earthworms (Fig. 1) are among the animals Annelid worms are distinguished from other important most frequently encountered by many Floridians. Our kids worms like nematodes by having a coelum or true body play with them (Fig. 2 A,B), dissect them in middle school cavity, a circulatory system, and a body divided into biology, we fish with them, they crawl across our sidewalks segments. Other familiar annelids are the Hirudinea and live in our flower pots. Despite this, their ecological (leeches), the Polychaeta (marine bristleworms), and the and economic importance often goes unrecognized. Enchytraeids (potworms). Within the order Opisthopora Earthworms have several important ecological roles. there are both aquatic and terrestrial species. We will use Additionally, some species are used commercially for bait, earthworm exclusively for terrestrial worms in the subor- animal feed, environmental remediation, and composting. der Crassiclitellata. Figure 2. Earthworms are frequently encountered by many Floridians. Credits: A) Emily E. Eubanks, University of Florida. B) William T. Crow, Figure 1. Earthworms collected from a parking lot following a heavy University of Florida rainfall. Credits: William T. Crow, University of Florida 1. This document is EENY-532, one of a series of the Entomology and Nematology Department, Florida Cooperative Extension Service, Institute of Food and Agricultural Sciences, University of Florida. -
Biodiversity and Trophic Ecology of Hydrothermal Vent Fauna Associated with Tubeworm Assemblages on the Juan De Fuca Ridge
Biogeosciences, 15, 2629–2647, 2018 https://doi.org/10.5194/bg-15-2629-2018 © Author(s) 2018. This work is distributed under the Creative Commons Attribution 4.0 License. Biodiversity and trophic ecology of hydrothermal vent fauna associated with tubeworm assemblages on the Juan de Fuca Ridge Yann Lelièvre1,2, Jozée Sarrazin1, Julien Marticorena1, Gauthier Schaal3, Thomas Day1, Pierre Legendre2, Stéphane Hourdez4,5, and Marjolaine Matabos1 1Ifremer, Centre de Bretagne, REM/EEP, Laboratoire Environnement Profond, 29280 Plouzané, France 2Département de sciences biologiques, Université de Montréal, C.P. 6128, succursale Centre-ville, Montréal, Québec, H3C 3J7, Canada 3Laboratoire des Sciences de l’Environnement Marin (LEMAR), UMR 6539 9 CNRS/UBO/IRD/Ifremer, BP 70, 29280, Plouzané, France 4Sorbonne Université, UMR7144, Station Biologique de Roscoff, 29680 Roscoff, France 5CNRS, UMR7144, Station Biologique de Roscoff, 29680 Roscoff, France Correspondence: Yann Lelièvre ([email protected]) Received: 3 October 2017 – Discussion started: 12 October 2017 Revised: 29 March 2018 – Accepted: 7 April 2018 – Published: 4 May 2018 Abstract. Hydrothermal vent sites along the Juan de Fuca community structuring. Vent food webs did not appear to be Ridge in the north-east Pacific host dense populations of organised through predator–prey relationships. For example, Ridgeia piscesae tubeworms that promote habitat hetero- although trophic structure complexity increased with ecolog- geneity and local diversity. A detailed description of the ical successional stages, showing a higher number of preda- biodiversity and community structure is needed to help un- tors in the last stages, the food web structure itself did not derstand the ecological processes that underlie the distribu- change across assemblages. -
Physical, Nutritional and Biochemical Status of Vermiwash Produced by Two Earthworm Species Lampito Mauritii (L) and Eudrillus Eugeniae (L)
Available online at www.worldscientificnews.com WSN 42 (2016) 228-255 EISSN 2392-2192 Physical, nutritional and biochemical status of vermiwash produced by two earthworm species Lampito mauritii (L) and Eudrillus eugeniae (L). Vitthalrao B. Khyade1,*, Sunanda Rajendra Pawar2 1The Research Group, Agriculture Development Trust, Shardanagar, Malegaon (Baramati) Dist. Pune – 413115, India 2Trustee and Head Academic Section, Agricultural Development Trust, Baramati Shardanagar, (Malegaon Col.) Post Box No.- 35, Tal. Baramati. Dist. Pune - 413 115 Maharashtra, India *E-mail address: [email protected] ABSTRACT In vermiculture, it is mandatory to keep the feed given to earthworm moist which will enable them to eat and procreate. Water is regularly sprinkled over the feed. The water mixes in the feed and oily content of earthworms body and slowly drains out from earthworm beds. The outgoing liquid is a concentrate with nutrients which is very beneficial for plants growth. This liquid is called vermiwash. The vermiwash is potential application in sustainable development for agriculture and biotechnology. This attempt deals with assessment the physico-chemical, nutritional and biochemical status of the vermiwash obtained using the popular composting earthworm species Eudrillus eugeniae (Kinb.) (Eudrilidae: Haplotaxida) and Lampito mauritii from three different leaf litters namely, Mango (Mangifera indica), Guava (Psidium guajava) and Sapota (Achrus sapota). The results showed substantial increase in the nutrient quality of the vermiwash produced with time in all of three cases. However, the vermiwash produced from guava leaf litter showed more content of electrical conductivity, magnesium, calcium, nitrite, phosphorus, carbohydrate, protein, lipid and amino acid compared with the vermiwash produced from the other two sapota and mango leaf litter by using the both earthworm species Eudrillus eugeniae and Lampito mauritii respectively. -
French Mediterranean Islands As a Refuge of Relic Earthworm Species: Cataladrilus Porquerollensis Sp
French Mediterranean islands as a refuge of relic earthworm species: Cataladrilus porquerollensis sp. nov. and Scherotheca portcrosana sp. nov. (Crassiclitellata, Lumbricidae) Daniel F Marchan, Thibaud Decaens, Darío J. Diaz Cosin, Mickael Hedde, Emmanuel Lapied, Jorge Domínguez To cite this version: Daniel F Marchan, Thibaud Decaens, Darío J. Diaz Cosin, Mickael Hedde, Emmanuel Lapied, et al.. French Mediterranean islands as a refuge of relic earthworm species: Cataladrilus porquerollensis sp. nov. and Scherotheca portcrosana sp. nov. (Crassiclitellata, Lumbricidae). European Journal of Taxonomy, Consortium of European Natural History Museums, 2020, 10.5852/ejt.2020.701. hal- 02940303 HAL Id: hal-02940303 https://hal.inrae.fr/hal-02940303 Submitted on 16 Sep 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. European Journal of Taxonomy 701: 1–22 ISSN 2118-9773 https://doi.org/10.5852/ejt.2020.701 www.europeanjournaloftaxonomy.eu 2020 · Marchán D.F. et al. This work is licensed under a Creative Commons Attribution License (CC BY 4.0). Research article urn:lsid:zoobank.org:pub:D9291955-F619-46EA-90E1-DA756D1B7C55 French Mediterranean islands as a refuge of relic earthworm species: Cataladrilus porquerollensis sp. nov. and Scherotheca portcrosana sp. -
Annelida, Amphinomidae) in the Mediterranean Sea with an Updated Revision of the Alien Mediterranean Amphinomids
A peer-reviewed open-access journal ZooKeys 337: 19–33 (2013)On the occurrence of the firewormEurythoe complanata complex... 19 doi: 10.3897/zookeys.337.5811 RESEARCH ARTICLE www.zookeys.org Launched to accelerate biodiversity research On the occurrence of the fireworm Eurythoe complanata complex (Annelida, Amphinomidae) in the Mediterranean Sea with an updated revision of the alien Mediterranean amphinomids Andrés Arias1, Rômulo Barroso2,3, Nuria Anadón1, Paulo C. Paiva4 1 Departamento de Biología de Organismos y Sistemas (Zoología), Universidad de Oviedo, Oviedo 33071, Spain 2 Pontifícia Universidade Católica do Rio de Janeiro , Rio de Janeiro, Brazil 3 Museu de Zoologia da Unicamp, Campinas, SP, Brazil 4 Departamento de Zoologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ) , Rio de Janeiro, RJ, Brasil Corresponding author: Andrés Arias ([email protected]) Academic editor: C. Glasby | Received 17 June 2013 | Accepted 19 September 2013 | Published 30 September 2013 Citation: Arias A, Barroso R, Anadón N, Paiva PC (2013) On the occurrence of the fireworm Eurythoe complanata complex (Annelida, Amphinomidae) in the Mediterranean Sea with an updated revision of the alien Mediterranean amphinomids. ZooKeys 337: 19–33. doi: 10.3897/zookeys.337.5811 Abstract The presence of two species within the Eurythoe complanata complex in the Mediterranean Sea is reported, as well as their geographical distributions. One species, Eurythoe laevisetis, occurs in the eastern and cen- tral Mediterranean, likely constituting the first historical introduction to the Mediterranean Sea and the other, Eurythoe complanata, in both eastern and Levantine basins. Brief notes on their taxonomy are also provided and their potential pathways for introduction to the Mediterranean are discussed. -
In the Atlantic-Mediterranean Biogeographic Area
SPECIES OF SPIOCHAETOPTERUS (POLYCHAETA, CHAETOPTERIDAE) IN THE ATLANTIC-MEDITERRANEAN BIOGEOGRAPHIC AREA MICHEL R. BHAUD BHAUD, MICHEL R. 1998 08 28. Species of Spiochaetopterus (Polychaeta, Chaetopteridae) in the Atlantic- SARSIA Mediterranean biogeographic area. – Sarsia 83:243-263. Bergen. ISSN 0036-4827. Five species of the genus Spiochaetopterus: S. typicus SARS, S. bergensis GITAY, S. costarum (CLAPARÈDE), S. oculatus WEBSTER, and S. solitarius (RIOJA) have been compared. These species can be divided into two groups: group A, with boreal biogeographic affinity, consisting of S. typicus and S. bergensis; group B, with temperate biogeographic affinity, consisting of S. costarum, S. solitarius and S. oculatus. The two groups differ in the shape of the specialized setae of segment A4, the number of segments in region B, and the structure of the tube. Representatives of group A have a middle region of two seg- ments, modified setae of segment A4 are distally rhomboid and the tubes are without articulations. Representatives of group B have a middle region of many, always more than 2 segments; modified setae of A4 are distally cordate, and the tubes are with articulations. In each geographic unit of the Atlantic-Mediterranean area, the species are divided into two groups of different sizes. The usefulness of such systematic characters as the number of segments in region B, ornamentation of the tubes and relative size of the pro- and peristomium is reexamined. New characters include the detailed morphol- ogy of the A4 setae, location of the secretory part of the ventral shield, and the structure of the secretory pores. Two diagnostic keys to species, one based on the tubes and the other on the A4 setae, are included. -
Size Variation and Geographical Distribution of the Luminous Earthworm Pontodrilus Litoralis (Grube, 1855) (Clitellata, Megascolecidae) in Southeast Asia and Japan
A peer-reviewed open-access journal ZooKeys 862: 23–43 (2019) Size variation and distribution of Pontodrilus litoralis 23 doi: 10.3897/zookeys.862.35727 RESEARCH ARTICLE http://zookeys.pensoft.net Launched to accelerate biodiversity research Size variation and geographical distribution of the luminous earthworm Pontodrilus litoralis (Grube, 1855) (Clitellata, Megascolecidae) in Southeast Asia and Japan Teerapong Seesamut1,2,4, Parin Jirapatrasilp2, Ratmanee Chanabun3, Yuichi Oba4, Somsak Panha2 1 Biological Sciences Program, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand 2 Ani- mal Systematics Research Unit, Department of Biology, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand 3 Program in Animal Science, Faculty of Agriculture Technology, Sakon Nakhon Rajabhat University, Sakon Nakhon 47000, Thailand 4 Department of Environmental Biology, Chubu University, Kasugai 487-8501, Japan Corresponding authors: Somsak Panha ([email protected]), Yuichi Oba ([email protected]) Academic editor: Samuel James | Received 24 April 2019 | Accepted 13 June 2019 | Published 9 July 2019 http://zoobank.org/663444CA-70E2-4533-895A-BF0698461CDF Citation: Seesamut T, Jirapatrasilp P, Chanabun R, Oba Y, Panha S (2019) Size variation and geographical distribution of the luminous earthworm Pontodrilus litoralis (Grube, 1855) (Clitellata, Megascolecidae) in Southeast Asia and Japan. ZooKeys 862: 23–42. https://doi.org/10.3897/zookeys.862.35727 Abstract The luminous earthworm Pontodrilus litoralis (Grube, 1855) occurs in a very wide range of subtropical and tropical coastal areas. Morphometrics on size variation (number of segments, body length and diameter) and genetic analysis using the mitochondrial cytochrome c oxidase subunit 1 (COI) gene sequence were conducted on 14 populations of P.