Rafael Medina, Ph.D. Education Professional Appointments
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Flora of New Zealand Mosses
FLORA OF NEW ZEALAND MOSSES FUNARIACEAE A.J. FIFE Fascicle 45 – APRIL 2019 © Landcare Research New Zealand Limited 2019. Unless indicated otherwise for specific items, this copyright work is licensed under the Creative Commons Attribution 4.0 International licence Attribution if redistributing to the public without adaptation: “Source: Manaaki Whenua – Landcare Research” Attribution if making an adaptation or derivative work: “Sourced from Manaaki Whenua – Landcare Research” See Image Information for copyright and licence details for images. CATALOGUING IN PUBLICATION Fife, Allan J. (Allan James), 1951– Flora of New Zealand : mosses. Fascicle 45, Funariaceae / Allan J. Fife. -- Lincoln, N.Z. : Manaaki Whenua Press, 2019. 1 online resource ISBN 978-0-947525-58-3 (pdf) ISBN 978-0-478-34747-0 (set) 1.Mosses -- New Zealand -- Identification. I. Title. II. Manaaki Whenua – Landcare Research New Zealand Ltd. UDC 582.344.55(931) DC 588.20993 DOI: 10.7931/B15MZ6 This work should be cited as: Fife, A.J. 2019: Funariaceae. In: Smissen, R.; Wilton, A.D. Flora of New Zealand – Mosses. Fascicle 45. Manaaki Whenua Press, Lincoln. http://dx.doi.org/10.7931/B15MZ6 Date submitted: 25 Oct 2017; Date accepted: 2 Jul 2018 Cover image: Entosthodon radians, habit with capsule, moist. Drawn by Rebecca Wagstaff from A.J. Fife 5882, CHR 104422. Contents Introduction..............................................................................................................................................1 Typification...............................................................................................................................................1 -
Check- and Red List of Bryophytes of the Czech Republic (2003)
Preslia, Praha, 75: 193–222, 2003 193 Check- and Red List of bryophytes of the Czech Republic (2003) Seznam a Červený seznam mechorostů České republiky (2003) Jan K u č e r a 1 and Jiří Vá ň a 2 1University of South Bohemia, Faculty of Biological Sciences, Branišovská 31, CZ-370 05 České Budějovice, Czech Republic, e-mail: [email protected]; 2Charles University in Prague, Faculty of Science, Department of Botany, Benátská 2, CZ-128 01 Prague, Czech Republic, e-mail: [email protected] Kučera J. & Váňa J. (2003): Check- and Red List of bryophytes of the Czech Republic (2003). – Preslia, Praha, 75: 193–222. The second version of the checklist and Red List of bryophytes of the Czech Republic is provided. Generally accepted infraspecific taxa have been incorporated into the checklist for the first time. With respect to the Red List, IUCN criteria version 3.1 has been adopted for evaluation of taxa, and the criteria used for listing in the respective categories are listed under each red-listed taxon. Taxa without recent localities and those where extinction has not been proven are listed as a subset of DD taxa. Little known and rare non-threatened taxa with incomplete knowledge of distribution which are worthy of further investigation are listed on the so-called attention list. In total, 849 species plus 5 subspecies and 19 varieties have been accepted. 23 other historically reported species and one va- riety were evaluated as doubtful with respect to unproven but possible occurrence in the territory, and 6 other species with proven occurrence require taxonomic clarification. -
Distribution and Phylogenetic Significance of the 71-Kb Inversion
Annals of Botany 99: 747–753, 2007 doi:10.1093/aob/mcm010, available online at www.aob.oxfordjournals.org Distribution and Phylogenetic Significance of the 71-kb Inversion in the Plastid Genome in Funariidae (Bryophyta) BERNARD GOFFINET1,*, NORMAN J. WICKETT1 , OLAF WERNER2 , ROSA MARIA ROS2 , A. JONATHAN SHAW3 and CYMON J. COX3,† 1Department of Ecology and Evolutionary Biology, 75 North Eagleville Road, University of Connecticut, Storrs, CT 06269-3043, USA, 2Universidad de Murcia, Facultad de Biologı´a, Departamento de Biologı´a Vegetal, Campus de Espinardo, 30100-Murcia, Spain and 3Department of Biology, Duke University, Durham, NC 27708, USA Received: 31 October 2006 Revision requested: 21 November 2006 Accepted: 21 December 2006 Published electronically: 2 March 2007 † Background and Aims The recent assembly of the complete sequence of the plastid genome of the model taxon Physcomitrella patens (Funariaceae, Bryophyta) revealed that a 71-kb fragment, encompassing much of the large single copy region, is inverted. This inversion of 57% of the genome is the largest rearrangement detected in the plastid genomes of plants to date. Although initially considered diagnostic of Physcomitrella patens, the inversion was recently shown to characterize the plastid genome of two species from related genera within Funariaceae, but was lacking in another member of Funariidae. The phylogenetic significance of the inversion has remained ambiguous. † Methods Exemplars of all families included in Funariidae were surveyed. DNA sequences spanning the inversion break ends were amplified, using primers that anneal to genes on either side of the putative end points of the inver- sion. Primer combinations were designed to yield a product for either the inverted or the non-inverted architecture. -
New National and Regional Bryophyte Records, 63
Journal of Bryology ISSN: 0373-6687 (Print) 1743-2820 (Online) Journal homepage: https://www.tandfonline.com/loi/yjbr20 New national and regional bryophyte records, 63 L. T. Ellis, O. M. Afonina, I. V. Czernyadjeva, L. A. Konoreva, A. D. Potemkin, V. M. Kotkova, M. Alataş, H. H. Blom, M. Boiko, R. A. Cabral, S. Jimenez, D. Dagnino, C. Turcato, L. Minuto, P. Erzberger, T. Ezer, O. V. Galanina, N. Hodgetts, M. S. Ignatov, A. Ignatova, S. G. Kazanovsky, T. Kiebacher, H. Köckinger, E. O. Korolkova, J. Larraín, A. I. Maksimov, D. Maity, A. Martins, M. Sim-Sim, F. Monteiro, L. Catarino, R. Medina, M. Nobis, A. Nowak, R. Ochyra, I. Parnikoza, V. Ivanets, V. Plášek, M. Philippe, P. Saha, Md. N. Aziz, A. V. Shkurko, S. Ştefănuţ, G. M. Suárez, A. Uygur, K. Erkul, M. Wierzgoń & A. Graulich To cite this article: L. T. Ellis, O. M. Afonina, I. V. Czernyadjeva, L. A. Konoreva, A. D. Potemkin, V. M. Kotkova, M. Alataş, H. H. Blom, M. Boiko, R. A. Cabral, S. Jimenez, D. Dagnino, C. Turcato, L. Minuto, P. Erzberger, T. Ezer, O. V. Galanina, N. Hodgetts, M. S. Ignatov, A. Ignatova, S. G. Kazanovsky, T. Kiebacher, H. Köckinger, E. O. Korolkova, J. Larraín, A. I. Maksimov, D. Maity, A. Martins, M. Sim-Sim, F. Monteiro, L. Catarino, R. Medina, M. Nobis, A. Nowak, R. Ochyra, I. Parnikoza, V. Ivanets, V. Plášek, M. Philippe, P. Saha, Md. N. Aziz, A. V. Shkurko, S. Ştefănuţ, G. M. Suárez, A. Uygur, K. Erkul, M. Wierzgoń & A. Graulich (2020): New national and regional bryophyte records, 63, Journal of Bryology, DOI: 10.1080/03736687.2020.1750930 To link to this article: https://doi.org/10.1080/03736687.2020.1750930 Published online: 18 May 2020. -
Vagrant Epiphytic Mosses in England and Wales
Article o the non-bryologist, bryophytes seem remarkably static compared Vagrant with birds, butterflies or moths. Bryologists know that distributions of species change, and that losses of epiphytic Tspecies to habitat destruction or pollution are countered by increasing taxa and spreaders (e.g. Jones, 1991), although it is often possible to mosses in revisit a historic locality for a moss or liverwort and find it in just the same place where our forefathers noted it decades before. Acidophiles England were increasing when E.W. Jones looked at Oxfordshire’s changing flora, but changing pollu- tion and climate have led to a subsequent shift and Wales from acid substrates to more base-rich, but also often very nutrient-rich, conditions (Bates & Preston, 2011). Changing conditions are exploited particularly rapidly by epiphytes, which have evolved effect- Sam Bosanquet ive dispersal mechanisms to cope with sudden host death and to allow colonization of bark examines some with suitable pH and nutrient status, which may of the reasons not be present nearby. It seems highly likely that epiphytes have been appearing as casual, non- why certain persistent colonies for many years, and that some regionally extinct species or current conservation epiphytic species priorities may be no more than occasional colon- are spreading into ists. Some bryophytes are already being found in significant quantity outside the range in which England and Wales they occurred in the early 20th century, for exam- and becoming ple the liverworts Cololejeunea minutissima and Colura calyptrifolia, and the moss Ulota phyllantha established. In (Bates & Preston, 2011). They are effectively addition, he lists a internal spreaders, expanding from ecologically suitable ground within the British Isles. -
Integrated Phylogenomic Analyses Reveal Recurrent Ancestral Large
bioRxiv preprint doi: https://doi.org/10.1101/603191; this version posted April 10, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Integrated phylogenomic analyses reveal recurrent ancestral large-scale 2 duplication events in mosses 3 4 Bei Gao1,2, Moxian Chen2,3, Xiaoshuang Li4, Yuqing Liang4,5, Daoyuan Zhang4, Andrew J. Wood6, Melvin J. Oliver7*, 5 Jianhua Zhang2,3,8* 6 7 1School of Life Sciences, The Chinese University of Hong Kong, Hong Kong, China. 8 2State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, China. 9 3Shenzhen Research Institute, The Chinese University of Hong Kong, Shenzhen, China. 10 4Key Laboratory of Biogeography and Bioresources, Xinjiang Institute of Ecology and Geography, Chinese Academy of 11 Sciences, Urumqi 830011, China. 12 5University of Chinese Academy of Sciences, Beijing 100049, China. 13 6Department of Plant Biology, Southern Illinois University-Carbondale, Carbondale, IL 62901-6509, USA. 14 7USDA-ARS-Plant Genetic Research Unit, University of Missouri, Columbia, MO 65211, USA. 15 8Department of Biology, Faculty of Science, Hong Kong Baptist University, Hong Kong, China. 16 17 *Correspondence: Jianhua Zhang: [email protected] and Melvin J. Oliver: [email protected] 18 19 20 Summary 21 • Mosses (Bryophyta) are a key group occupying important phylogenetic position for understanding land plant 22 (embryophyte) evolution. The class Bryopsida represents the most diversified lineage and contains more than 95% of the 23 modern mosses, whereas the other classes are by nature species-poor. -
AMBRA1 Controls Plant Development and Senescence in Physcomitrella Patens
Presentation type: Oral Presentation, Poster Presentation (underline the preferred type) AMBRA1 controls plant development and senescence in Physcomitrella patens. Alessandro Alboresi1, Jessica Ceccato1, Tomas Morosinotto1, Luisa Dalla Valle1. The first one should be the presenting/corresponding author (underlined) 1Dipartimento di Biologia, Università di Padova, Via Ugo Bassi 58/B, 35121, Padova ([email protected]; [email protected]; [email protected]) Autophagy is a universal mechanism that in plants control development, resistance to stresses and starvation. The role of autophagy is possible thanks to the programmed degradation of cell material that is delivered to the vacuole where hydrolases and proteases are localized. So far, many autophagy-related proteins (ATGs) have been identified. Some of them are universal, some are either specific to animals, plants or yeast. ATG protein complexes govern autophagosome initiation, nucleation, expansion, and maturation. In particular, the regulation of nucleation by the ATG6 (Beclin-1 in mammals) complex has not been well defined in plants. Here we described the study of the Activating Molecule in Beclin 1-Regulated Autophagy (AMBRA1) protein, recently identified in mice and then characterized in our department in zebrafish and in the non-vertebrate chordate Botryllus schlosseri. In animals AMBRA1 is a positive regulator of autophagy that binds Beclin-1 upon autophagic stimuli. AMBRA1 is a large intrinsically disordered protein, able to bind other regulatory partners involved in cell processes such as autophagy, apoptosis, cell proliferation, development and cancer. AMBRA1 sequence was found in plant genomes and we are studying its function in Physcomitrella patens where two lowly expressed genes are present, AMBRA1a and AMBRA1b. -
Biodiversity, Conservation and Cultural History
Sycamore maple wooded pastures in the Northern Alps: Biodiversity, conservation and cultural history Inauguraldissertation der Philosophisch-naturwissenschaftlichen Fakultät der Universität Bern vorgelegt von Thomas Kiebacher von Brixen (Italien) Leiter der Arbeit: Prof. Dr. Christoph Scheidegger Dr. Ariel Bergamini PD Dr. Matthias Bürgi WSL Swiss Federal Research Institute, Birmensdorf Sycamore maple wooded pastures in the Northern Alps: Biodiversity, conservation and cultural history Inauguraldissertation der Philosophisch-naturwissenschaftlichen Fakultät der Universität Bern vorgelegt von Thomas Kiebacher von Brixen (Italien) Leiter der Arbeit: Prof. Dr. Christoph Scheidegger Dr. Ariel Bergamini PD Dr. Matthias Bürgi WSL Swiss Federal Research Institute, Birmensdorf Von der Philosophisch-naturwissenschaftlichen Fakultät angenommen. Bern, 13. September 2016 Der Dekan: Prof. Dr. Gilberto Colangelo Meinen Eltern, Frieda und Rudolf Contents Abstract ................................................................................................................................................... 9 Introduction ........................................................................................................................................... 11 Context and aims ............................................................................................................................... 13 The study system: Sycamore maple wooded pastures ..................................................................... 13 Biodiversity ....................................................................................................................................... -
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Cryptogamie, Bryologie, 2004, 25 (4): 349-356 © 2004 Adac. Tous droits réservés Orthotrichum gymnostomum Brid. and other interesting Orthotrichaceae from Calabria (Italy) Francisco LARAa*, Domenico PUNTILLOb, Ricardo GARILLETIc & Vicente MAZIMPAKAa a Departamento de Biología (Botánica), Facultad de Ciencias, Universidad Autónoma de Madrid, Cantoblanco, E-28049 Madrid, Spain b Museo di Storia Naturale della Calabria ed Orto Botanico, Universita della Calabria I-87030 Arcavacata di Rende (CS), Italy c Departamento de Botánica, Facultad de Farmacia, Universidad de Valencia. Campus de Burjassot, E-46100 Valencia, Spain (Received 22 December 2003, accepted 13 February 2004) Abstract – Orthotrichum gymnostomum Brid. is first reported from Calabria (Southern Italy); this is the first record of the species in the Mediterranean Area. In addition, six other species are reported as new to the Calabria region (Orthotrichum acuminatum H. Philib., O. alpestre Hornsch. ex Bruch, Schimp. & Gümbel, O. philibertii Venturi, O. scanicum Grönvall, O. stramineum Hornsch., and O. schimperi Hammar), while new localities are given for Orthotrichum anomalum Hedw., O. shawii Wilson, O. speciosum Nees, O. tenellum Brid., and Ulota crispa (Hedw.) Brid., most of which had not been reported for this area after 1950. Orthotrichum / Ulota / Musci / Mediterranean area Resumen – Se da a conocer el hallazgo de Orthotrichum gymnostomum Brid. en Calabria (Sur de Italia), lo que representa la primera cita de esta especie en la Región Mediterránea. Además se aportan otras seis novedades para la región de Calabria (Orthotrichum acumi- natum H. Philib., O. alpestre Hornsch. ex Bruch, Schimp. & Gümbel, O. philibertii Venturi, O. scanicum Grönvall, O. stramineum Hornsch. y O. schimperi Hammar), y se proporcionan nuevas localidades para Orthotrichum anomalum Hedw., O. -
Polyploidization Within the Funariaceae—A Key Principle Behind Speciation, Sporophyte Reduction and the High Variance of Spore Diameters?
Bry. Div. Evo. 043 (1): 164–179 ISSN 2381-9677 (print edition) DIVERSITY & https://www.mapress.com/j/bde BRYOPHYTEEVOLUTION Copyright © 2021 Magnolia Press Article ISSN 2381-9685 (online edition) https://doi.org/10.11646/bde.43.1.13 Polyploidization within the Funariaceae—a key principle behind speciation, sporophyte reduction and the high variance of spore diameters? ANNA K. OSTENDORF1,2,#, NICO VAN GESSEL2,#, YARON MALKOWSKY1,3, MARKO S. SABOVLJEVIC4, STEFAN A. RENSING5,6,7, ANITA ROTH-NEBELSICK1 & RALF RESKI2,7,8,* 1State Museum of Natural History, Rosenstein 1, 70191 Stuttgart, Germany �[email protected]; �[email protected]; https://orcid.org/0000-0002-9401-5128 2Plant Biotechnology, Faculty of Biology, University of Freiburg, Schaenzlestrasse 1, 79104 Freiburg, Germany �[email protected]; https://orcid.org/0000-0002-0606-246X 3Nees Institute for Biodiversity of Plants, University of Bonn, Meckenheimer Allee 170, 53115 Bonn, Germany �[email protected]; 4Institute of Botany and Botanical Garden, Faculty of Biology, University of Belgrade, Takovska 43, 11000 Belgrade, Serbia �[email protected]; https://orcid.org/0000-0001-5809-0406 5Plant Cell Biology, Faculty of Biology, University of Marburg, Karl-von-Frisch-Str. 8, 35043 Marburg, Germany �[email protected]; https://orcid.org/0000-0002-0225-873X 6SYNMIKRO Center for Synthetic Microbiology, University of Marburg, Karl-von-Frisch-Straße 16, 35043 Marburg, Germany 7Signalling Research Centres BIOSS and CIBSS, University -
Phytochrome Diversity in Green Plants and the Origin of Canonical Plant Phytochromes
ARTICLE Received 25 Feb 2015 | Accepted 19 Jun 2015 | Published 28 Jul 2015 DOI: 10.1038/ncomms8852 OPEN Phytochrome diversity in green plants and the origin of canonical plant phytochromes Fay-Wei Li1, Michael Melkonian2, Carl J. Rothfels3, Juan Carlos Villarreal4, Dennis W. Stevenson5, Sean W. Graham6, Gane Ka-Shu Wong7,8,9, Kathleen M. Pryer1 & Sarah Mathews10,w Phytochromes are red/far-red photoreceptors that play essential roles in diverse plant morphogenetic and physiological responses to light. Despite their functional significance, phytochrome diversity and evolution across photosynthetic eukaryotes remain poorly understood. Using newly available transcriptomic and genomic data we show that canonical plant phytochromes originated in a common ancestor of streptophytes (charophyte algae and land plants). Phytochromes in charophyte algae are structurally diverse, including canonical and non-canonical forms, whereas in land plants, phytochrome structure is highly conserved. Liverworts, hornworts and Selaginella apparently possess a single phytochrome, whereas independent gene duplications occurred within mosses, lycopods, ferns and seed plants, leading to diverse phytochrome families in these clades. Surprisingly, the phytochrome portions of algal and land plant neochromes, a chimera of phytochrome and phototropin, appear to share a common origin. Our results reveal novel phytochrome clades and establish the basis for understanding phytochrome functional evolution in land plants and their algal relatives. 1 Department of Biology, Duke University, Durham, North Carolina 27708, USA. 2 Botany Department, Cologne Biocenter, University of Cologne, 50674 Cologne, Germany. 3 University Herbarium and Department of Integrative Biology, University of California, Berkeley, California 94720, USA. 4 Royal Botanic Gardens Edinburgh, Edinburgh EH3 5LR, UK. 5 New York Botanical Garden, Bronx, New York 10458, USA. -
Bryophyte Flora of the Czech Republic: Updated Checklist and Red List and a Brief Analysis
Preslia 84: 813–850, 2012 813 Bryophyte flora of the Czech Republic: updated checklist and Red List and a brief analysis Bryoflóra České republiky: aktualizace seznamu a červeného seznamu a stručná analýza Dedicated to the centenary of the Czech Botanical Society (1912–2012) Jan K u č e r a1, Jiří Vá ň a2 & Zbyněk H r a d í l e k3 1University of South Bohemia, Faculty of Science, Branišovská 31, CZ–370 05 České Budějovice, Czech Republic, e-mail: [email protected]; 2Charles University Prague, Department of Botany, Faculty of Science, Benátská 2, CZ–128 01 Prague 2, Czech Republic, e-mail: [email protected]; 3Palacký University Olomouc, Department of Botany, Faculty of Science, Šlechtitelů 11, CZ-783 71 Olomouc-Holice, Czech Republic, e-mail: [email protected]. Kučera J., Váňa J. & Hradílek Z. (2012): Bryophyte flora of the Czech Republic: updated checklist and Red List and a brief analysis. – Preslia 84: 813–850. The bryoflora of the Czech Republic is analysed using an updated version of the checklist that includes recent taxonomic and nomenclatural changes. In addition, the baseline data was com- pletely revised using the IUCN 3.1 criteria. The main list includes 863 species of bryophytes (4 hornworts, 207 liverworts and 652 mosses) with 5 additional subspecies and 23 generally recog- nized varieties; 9 additional species are listed as of doubtful taxonomic status and 17 other species are evaluated as of uncertain occurrence. Of the 892 taxa evaluated, 46% qualified for inclusion in Red List categories (40 taxa in category RE, 70 in CR, 88 in EN, 93 in VU, 66 in LR-nt, 24 in DD-va and 30 in DD), while 54% are considered Least Concern (LC).