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Taxonomy and Diversity of the Sponge Fauna from Walters Shoal, a Shallow Seamount in the Western Indian Ocean Region
Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region By Robyn Pauline Payne A thesis submitted in partial fulfilment of the requirements for the degree of Magister Scientiae in the Department of Biodiversity and Conservation Biology, University of the Western Cape. Supervisors: Dr Toufiek Samaai Prof. Mark J. Gibbons Dr Wayne K. Florence The financial assistance of the National Research Foundation (NRF) towards this research is hereby acknowledged. Opinions expressed and conclusions arrived at, are those of the author and are not necessarily to be attributed to the NRF. December 2015 Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region Robyn Pauline Payne Keywords Indian Ocean Seamount Walters Shoal Sponges Taxonomy Systematics Diversity Biogeography ii Abstract Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region R. P. Payne MSc Thesis, Department of Biodiversity and Conservation Biology, University of the Western Cape. Seamounts are poorly understood ubiquitous undersea features, with less than 4% sampled for scientific purposes globally. Consequently, the fauna associated with seamounts in the Indian Ocean remains largely unknown, with less than 300 species recorded. One such feature within this region is Walters Shoal, a shallow seamount located on the South Madagascar Ridge, which is situated approximately 400 nautical miles south of Madagascar and 600 nautical miles east of South Africa. Even though it penetrates the euphotic zone (summit is 15 m below the sea surface) and is protected by the Southern Indian Ocean Deep- Sea Fishers Association, there is a paucity of biodiversity and oceanographic data. -
Supplementary Tales
Metabarcoding reveals different zooplankton communities in northern and southern areas of the North Sea Jan Niklas Macher, Berry B. van der Hoorn, Katja T. C. A. Peijnenburg, Lodewijk van Walraven, Willem Renema Supplementary tables 1-5 Table S1: Sampling stations and recorded abiotic variables recorded during the NICO 10 expedition from the Dutch Coast to the Shetland Islands Sampling site name Coordinates (°N, °E) Mean remperature (°C) Mean salinity (PSU) Depth (m) S74 59.416510, 0.499900 8.2 35.1 134 S37 58.1855556, 0.5016667 8.7 35.1 89 S93 57.36046, 0.57784 7.8 34.8 84 S22 56.5866667, 0.6905556 8.3 34.9 220 S109 56.06489, 1.59652 8.7 35 79 S130 55.62157, 2.38651 7.8 34.8 73 S156 54.88581, 3.69192 8.3 34.6 41 S176 54.41489, 4.04154 9.6 34.6 43 S203 53.76851, 4.76715 11.8 34.5 34 Table S2: Species list and read number per sampling site Class Order Family Genus Species S22 S37 S74 S93 S109 S130 S156 S176 S203 Copepoda Calanoida Acartiidae Acartia Acartia clausi 0 0 0 72 0 170 15 630 3995 Copepoda Calanoida Acartiidae Acartia Acartia tonsa 0 0 0 0 0 0 0 0 23 Hydrozoa Trachymedusae Rhopalonematidae Aglantha Aglantha digitale 0 0 0 0 1870 117 420 629 0 Actinopterygii Trachiniformes Ammodytidae Ammodytes Ammodytes marinus 0 0 0 0 0 263 0 35 0 Copepoda Harpacticoida Miraciidae Amphiascopsis Amphiascopsis cinctus 344 0 0 992 2477 2500 9574 8947 0 Ophiuroidea Amphilepidida Amphiuridae Amphiura Amphiura filiformis 0 0 0 0 219 0 0 1470 63233 Copepoda Calanoida Pontellidae Anomalocera Anomalocera patersoni 0 0 586 0 0 0 0 0 0 Bivalvia Venerida -
Appendix: Some Important Early Collections of West Indian Type Specimens, with Historical Notes
Appendix: Some important early collections of West Indian type specimens, with historical notes Duchassaing & Michelotti, 1864 between 1841 and 1864, we gain additional information concerning the sponge memoir, starting with the letter dated 8 May 1855. Jacob Gysbert Samuel van Breda A biography of Placide Duchassaing de Fonbressin was (1788-1867) was professor of botany in Franeker (Hol published by his friend Sagot (1873). Although an aristo land), of botany and zoology in Gent (Belgium), and crat by birth, as we learn from Michelotti's last extant then of zoology and geology in Leyden. Later he went to letter to van Breda, Duchassaing did not add de Fon Haarlem, where he was secretary of the Hollandsche bressin to his name until 1864. Duchassaing was born Maatschappij der Wetenschappen, curator of its cabinet around 1819 on Guadeloupe, in a French-Creole family of natural history, and director of Teyler's Museum of of planters. He was sent to school in Paris, first to the minerals, fossils and physical instruments. Van Breda Lycee Louis-le-Grand, then to University. He finished traveled extensively in Europe collecting fossils, especial his studies in 1844 with a doctorate in medicine and two ly in Italy. Michelotti exchanged collections of fossils additional theses in geology and zoology. He then settled with him over a long period of time, and was received as on Guadeloupe as physician. Because of social unrest foreign member of the Hollandsche Maatschappij der after the freeing of native labor, he left Guadeloupe W etenschappen in 1842. The two chief papers of Miche around 1848, and visited several islands of the Antilles lotti on fossils were published by the Hollandsche Maat (notably Nevis, Sint Eustatius, St. -
Diversity of Norwegian Sea Slugs (Nudibranchia): New Species to Norwegian Coastal Waters and New Data on Distribution of Rare Species
Fauna norvegica 2013 Vol. 32: 45-52. ISSN: 1502-4873 Diversity of Norwegian sea slugs (Nudibranchia): new species to Norwegian coastal waters and new data on distribution of rare species Jussi Evertsen1 and Torkild Bakken1 Evertsen J, Bakken T. 2013. Diversity of Norwegian sea slugs (Nudibranchia): new species to Norwegian coastal waters and new data on distribution of rare species. Fauna norvegica 32: 45-52. A total of 5 nudibranch species are reported from the Norwegian coast for the first time (Doridoxa ingolfiana, Goniodoris castanea, Onchidoris sparsa, Eubranchus rupium and Proctonotus mucro- niferus). In addition 10 species that can be considered rare in Norwegian waters are presented with new information (Lophodoris danielsseni, Onchidoris depressa, Palio nothus, Tritonia griegi, Tritonia lineata, Hero formosa, Janolus cristatus, Cumanotus beaumonti, Berghia norvegica and Calma glau- coides), in some cases with considerable changes to their distribution. These new results present an update to our previous extensive investigation of the nudibranch fauna of the Norwegian coast from 2005, which now totals 87 species. An increase in several new species to the Norwegian fauna and new records of rare species, some with considerable updates, in relatively few years results mainly from sampling effort and contributions by specialists on samples from poorly sampled areas. doi: 10.5324/fn.v31i0.1576. Received: 2012-12-02. Accepted: 2012-12-20. Published on paper and online: 2013-02-13. Keywords: Nudibranchia, Gastropoda, taxonomy, biogeography 1. Museum of Natural History and Archaeology, Norwegian University of Science and Technology, NO-7491 Trondheim, Norway Corresponding author: Jussi Evertsen E-mail: [email protected] IntRODUCTION the main aims. -
Molecular Phylogeny of Echiuran Worms (Phylum: Annelida) Reveals Evolutionary Pattern of Feeding Mode and Sexual Dimorphism
Molecular Phylogeny of Echiuran Worms (Phylum: Annelida) Reveals Evolutionary Pattern of Feeding Mode and Sexual Dimorphism Ryutaro Goto1,2*, Tomoko Okamoto2, Hiroshi Ishikawa3, Yoichi Hamamura4, Makoto Kato2 1 Department of Marine Ecosystem Dynamics, Atmosphere and Ocean Research Institute, The University of Tokyo, Kashiwa, Chiba, Japan, 2 Graduate School of Human and Environmental Studies, Kyoto University, Kyoto, Japan, 3 Uwajima, Ehime, Japan, 4 Kure, Hiroshima, Japan Abstract The Echiura, or spoon worms, are a group of marine worms, most of which live in burrows in soft sediments. This annelid- like animal group was once considered as a separate phylum because of the absence of segmentation, although recent molecular analyses have placed it within the annelids. In this study, we elucidate the interfamily relationships of echiuran worms and their evolutionary pattern of feeding mode and sexual dimorphism, by performing molecular phylogenetic analyses using four genes (18S, 28S, H3, and COI) of representatives of all extant echiuran families. Our results suggest that Echiura is monophyletic and comprises two unexpected groups: [Echiuridae+Urechidae+Thalassematidae] and [Bone- lliidae+Ikedidae]. This grouping agrees with the presence/absence of marked sexual dimorphism involving dwarf males and the paired/non-paired configuration of the gonoducts (genital sacs). Furthermore, the data supports the sister group relationship of Echiuridae and Urechidae. These two families share the character of having anal chaetae rings around the posterior trunk as a synapomorphy. The analyses also suggest that deposit feeding is a basal feeding mode in echiurans and that filter feeding originated once in the common ancestor of Urechidae. Overall, our results contradict the currently accepted order-level classification, especially in that Echiuroinea is polyphyletic, and provide novel insights into the evolution of echiuran worms. -
A Bioturbation Classification of European Marine Infaunal
A bioturbation classification of European marine infaunal invertebrates Ana M. Queiros 1, Silvana N. R. Birchenough2, Julie Bremner2, Jasmin A. Godbold3, Ruth E. Parker2, Alicia Romero-Ramirez4, Henning Reiss5,6, Martin Solan3, Paul J. Somerfield1, Carl Van Colen7, Gert Van Hoey8 & Stephen Widdicombe1 1Plymouth Marine Laboratory, Prospect Place, The Hoe, Plymouth, PL1 3DH, U.K. 2The Centre for Environment, Fisheries and Aquaculture Science, Pakefield Road, Lowestoft, NR33 OHT, U.K. 3Department of Ocean and Earth Science, National Oceanography Centre, University of Southampton, Waterfront Campus, European Way, Southampton SO14 3ZH, U.K. 4EPOC – UMR5805, Universite Bordeaux 1- CNRS, Station Marine d’Arcachon, 2 Rue du Professeur Jolyet, Arcachon 33120, France 5Faculty of Biosciences and Aquaculture, University of Nordland, Postboks 1490, Bodø 8049, Norway 6Department for Marine Research, Senckenberg Gesellschaft fu¨ r Naturforschung, Su¨ dstrand 40, Wilhelmshaven 26382, Germany 7Marine Biology Research Group, Ghent University, Krijgslaan 281/S8, Ghent 9000, Belgium 8Bio-Environmental Research Group, Institute for Agriculture and Fisheries Research (ILVO-Fisheries), Ankerstraat 1, Ostend 8400, Belgium Keywords Abstract Biodiversity, biogeochemical, ecosystem function, functional group, good Bioturbation, the biogenic modification of sediments through particle rework- environmental status, Marine Strategy ing and burrow ventilation, is a key mediator of many important geochemical Framework Directive, process, trait. processes in marine systems. In situ quantification of bioturbation can be achieved in a myriad of ways, requiring expert knowledge, technology, and Correspondence resources not always available, and not feasible in some settings. Where dedi- Ana M. Queiros, Plymouth Marine cated research programmes do not exist, a practical alternative is the adoption Laboratory, Prospect Place, The Hoe, Plymouth PL1 3DH, U.K. -
Comparative Ultrastructure of the Spermatogenesis of Three Species of Poecilosclerida (Porifera, Demospongiae)
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/329545710 Comparative ultrastructure of the spermatogenesis of three species of Poecilosclerida (Porifera, Demospongiae) Article in Zoomorphology · December 2018 DOI: 10.1007/s00435-018-0429-4 CITATION READS 1 72 4 authors: Vivian Vasconcellos Philippe Willenz Universidade Federal da Bahia Royal Belgian Institute of Natural Sciences 6 PUBLICATIONS 118 CITATIONS 85 PUBLICATIONS 1,200 CITATIONS SEE PROFILE SEE PROFILE Alexander V Ereskovsky Emilio Lanna French National Centre for Scientific Research Universidade Federal da Bahia 202 PUBLICATIONS 3,317 CITATIONS 31 PUBLICATIONS 228 CITATIONS SEE PROFILE SEE PROFILE Some of the authors of this publication are also working on these related projects: Organization and patterning of sponge epithelia View project Sponges from Peru - Esponjas del Perú View project All content following this page was uploaded by Alexander V Ereskovsky on 25 April 2020. The user has requested enhancement of the downloaded file. Zoomorphology https://doi.org/10.1007/s00435-018-0429-4 ORIGINAL PAPER Comparative ultrastructure of the spermatogenesis of three species of Poecilosclerida (Porifera, Demospongiae) Vivian Vasconcellos1,2 · Philippe Willenz3,4 · Alexander Ereskovsky5,6 · Emilio Lanna1,2 Received: 15 August 2018 / Revised: 26 November 2018 / Accepted: 30 November 2018 © Springer-Verlag GmbH Germany, part of Springer Nature 2018 Abstract The spermatogenesis of Porifera is still relatively poorly understood. In the past, it was accepted that all species presented a primitive-type spermatozoon, lacking special structures and acrosome. Nonetheless, a very peculiar spermatogenesis resulting in a sophisticated V-shaped spermatozoon with an acrosome was found in Poecilosclerida. -
Download Full Article 2.4MB .Pdf File
Memoirs of Museum Victoria 71: 217–236 (2014) Published December 2014 ISSN 1447-2546 (Print) 1447-2554 (On-line) http://museumvictoria.com.au/about/books-and-journals/journals/memoirs-of-museum-victoria/ Original specimens and type localities of early described polychaete species (Annelida) from Norway, with particular attention to species described by O.F. Müller and M. Sars EIVIND OUG1,* (http://zoobank.org/urn:lsid:zoobank.org:author:EF42540F-7A9E-486F-96B7-FCE9F94DC54A), TORKILD BAKKEN2 (http://zoobank.org/urn:lsid:zoobank.org:author:FA79392C-048E-4421-BFF8-71A7D58A54C7) AND JON ANDERS KONGSRUD3 (http://zoobank.org/urn:lsid:zoobank.org:author:4AF3F49E-9406-4387-B282-73FA5982029E) 1 Norwegian Institute for Water Research, Region South, Jon Lilletuns vei 3, NO-4879 Grimstad, Norway ([email protected]) 2 Norwegian University of Science and Technology, University Museum, NO-7491 Trondheim, Norway ([email protected]) 3 University Museum of Bergen, University of Bergen, PO Box 7800, NO-5020 Bergen, Norway ([email protected]) * To whom correspondence and reprint requests should be addressed. E-mail: [email protected] Abstract Oug, E., Bakken, T. and Kongsrud, J.A. 2014. Original specimens and type localities of early described polychaete species (Annelida) from Norway, with particular attention to species described by O.F. Müller and M. Sars. Memoirs of Museum Victoria 71: 217–236. Early descriptions of species from Norwegian waters are reviewed, with a focus on the basic requirements for re- assessing their characteristics, in particular, by clarifying the status of the original material and locating sampling sites. A large number of polychaete species from the North Atlantic were described in the early period of zoological studies in the 18th and 19th centuries. -
Marine Information Network Information on the Species and Habitats Around the Coasts and Sea of the British Isles
MarLIN Marine Information Network Information on the species and habitats around the coasts and sea of the British Isles Sponges, shade-tolerant red seaweeds and Dendrodoa grossularia on wave-surged overhanging lower eulittoral bedrock and caves MarLIN – Marine Life Information Network Marine Evidence–based Sensitivity Assessment (MarESA) Review John Readman 2020-01-24 A report from: The Marine Life Information Network, Marine Biological Association of the United Kingdom. Please note. This MarESA report is a dated version of the online review. Please refer to the website for the most up-to-date version [https://www.marlin.ac.uk/habitats/detail/1203]. All terms and the MarESA methodology are outlined on the website (https://www.marlin.ac.uk) This review can be cited as: Readman, J.A.J., 2020. Sponges, shade-tolerant red seaweeds and [Dendrodoa grossularia] on wave- surged overhanging lower eulittoral bedrock and caves. In Tyler-Walters H. and Hiscock K. (eds) Marine Life Information Network: Biology and Sensitivity Key Information Reviews, [on-line]. Plymouth: Marine Biological Association of the United Kingdom. DOI https://dx.doi.org/10.17031/marlinhab.1203.1 The information (TEXT ONLY) provided by the Marine Life Information Network (MarLIN) is licensed under a Creative Commons Attribution-Non-Commercial-Share Alike 2.0 UK: England & Wales License. Note that images and other media featured on this page are each governed by their own terms and conditions and they may or may not be available for reuse. Permissions beyond the scope of this -
OREGON ESTUARINE INVERTEBRATES an Illustrated Guide to the Common and Important Invertebrate Animals
OREGON ESTUARINE INVERTEBRATES An Illustrated Guide to the Common and Important Invertebrate Animals By Paul Rudy, Jr. Lynn Hay Rudy Oregon Institute of Marine Biology University of Oregon Charleston, Oregon 97420 Contract No. 79-111 Project Officer Jay F. Watson U.S. Fish and Wildlife Service 500 N.E. Multnomah Street Portland, Oregon 97232 Performed for National Coastal Ecosystems Team Office of Biological Services Fish and Wildlife Service U.S. Department of Interior Washington, D.C. 20240 Table of Contents Introduction CNIDARIA Hydrozoa Aequorea aequorea ................................................................ 6 Obelia longissima .................................................................. 8 Polyorchis penicillatus 10 Tubularia crocea ................................................................. 12 Anthozoa Anthopleura artemisia ................................. 14 Anthopleura elegantissima .................................................. 16 Haliplanella luciae .................................................................. 18 Nematostella vectensis ......................................................... 20 Metridium senile .................................................................... 22 NEMERTEA Amphiporus imparispinosus ................................................ 24 Carinoma mutabilis ................................................................ 26 Cerebratulus californiensis .................................................. 28 Lineus ruber ......................................................................... -
The Genome of Schmidtea Mediterranea and the Evolution Of
OPEN ArtICLE doi:10.1038/nature25473 The genome of Schmidtea mediterranea and the evolution of core cellular mechanisms Markus Alexander Grohme1*, Siegfried Schloissnig2*, Andrei Rozanski1, Martin Pippel2, George Robert Young3, Sylke Winkler1, Holger Brandl1, Ian Henry1, Andreas Dahl4, Sean Powell2, Michael Hiller1,5, Eugene Myers1 & Jochen Christian Rink1 The planarian Schmidtea mediterranea is an important model for stem cell research and regeneration, but adequate genome resources for this species have been lacking. Here we report a highly contiguous genome assembly of S. mediterranea, using long-read sequencing and a de novo assembler (MARVEL) enhanced for low-complexity reads. The S. mediterranea genome is highly polymorphic and repetitive, and harbours a novel class of giant retroelements. Furthermore, the genome assembly lacks a number of highly conserved genes, including critical components of the mitotic spindle assembly checkpoint, but planarians maintain checkpoint function. Our genome assembly provides a key model system resource that will be useful for studying regeneration and the evolutionary plasticity of core cell biological mechanisms. Rapid regeneration from tiny pieces of tissue makes planarians a prime De novo long read assembly of the planarian genome model system for regeneration. Abundant adult pluripotent stem cells, In preparation for genome sequencing, we inbred the sexual strain termed neoblasts, power regeneration and the continuous turnover of S. mediterranea (Fig. 1a) for more than 17 successive sib- mating of all cell types1–3, and transplantation of a single neoblast can rescue generations in the hope of decreasing heterozygosity. We also developed a lethally irradiated animal4. Planarians therefore also constitute a a new DNA isolation protocol that meets the purity and high molecular prime model system for stem cell pluripotency and its evolutionary weight requirements of PacBio long-read sequencing12 (Extended Data underpinnings5. -
Proceedings of the United States National Museum
PROCEEDINGS OF THE UNITED STATES NATIONAL MUSEUM SMITHSONIAN INSTITUTION U. S. NATIONAL MUSEUM VoL 109 WMhington : 1959 No. 3412 MARINE MOLLUSCA OF POINT BARROW, ALASKA Bv Nettie MacGinitie Introduction The material upon which this study is based was collected by G. E. MacGinitie in the vicinity of Point Barrow, Alaska. His work on the invertebrates of the region (see G. E. MacGinitie, 1955j was spon- sored by contracts (N6-0NR 243-16) between the OfRce of Naval Research and the California Institute of Technology (1948) and The Johns Hopkins L^niversity (1949-1950). The writer, who served as research associate under this project, spent the. periods from July 10 to Oct. 10, 1948, and from June 1949 to August 1950 at the Arctic Research Laboratory, which is located at Point Barrow base at ap- proximately long. 156°41' W. and lat. 71°20' N. As the northernmost point in Alaska, and representing as it does a point about midway between the waters of northwest Greenland and the Kara Sea, where collections of polar fauna have been made. Point Barrow should be of particular interest to students of Arctic forms. Although the dredge hauls made during the collection of these speci- mens number in the hundreds and, compared with most "expedition standards," would be called fairly intensive, the area of the ocean ' Kerckhofl Marine Laboratory, California Institute of Technology. 473771—59 1 59 — 60 PROCEEDINGS OF THE NATIONAL MUSEUM vol. los bottom touched by the dredge is actually small in comparison with the total area involved in the investigation. Such dredge hauls can yield nothing comparable to what can be obtained from a mudflat at low tide, for instance.