Wywołane Przez Kocuria Kristinaeu Chorej

Total Page:16

File Type:pdf, Size:1020Kb

Wywołane Przez Kocuria Kristinaeu Chorej Forum Nefrologiczne 2019, tom 12, nr 3, 182–186 PRZYPADKI KLINICZNE Copyright © 2019 Via Medica ISSN 1899–3338 Dariusz Szczyra, Władysław Grzeszczak Katedra Chorób Wewnętrznych, Diabetologii i Nefrologii w Zabrzu, Śląski Uniwersytet Medyczny w Katowicach Dializacyjne zapalenie otrzewnej wywołane przez Kocuria kristinae u chorej ze schyłkową niewydolnością nerek leczonej metodą ciągłej ambulatoryjnej dializy otrzewnowej (CADO) Peritoneal dialysis peritonitis induced by Kocuria kristinae in a patient with end-stage renal disease treated with continuous ambulatory peritoneal dialysis (CAPD) neal dialysis treated since February 2018, in which, ABSTRACT one year after the start of this method, the peritoneal dialysis peritonitis was performed, and in the per- Kocuria kristinae is a bacteria that lives on the skin formed culture this rare bacterium was bred. of humans and other mammals, which rarely causes Forum Nefrol 2019, vol 12, no 3, 182–186 infections. However, there are sporadic reports of the peritoneal peritonitis that it causes. Below, we Key words: Kocuria kristinae, peritoneal dialysis, present a case of a 60-year-old woman with perito- peritoneal dialysis peritonitis WSTĘP stinae często rośnie na prostych podłożach, ta- kich jak agar z krwią, w temperaturze 25–37°C. Kocuria kristinae to bakteria z rodziny Mi- Średnica jej komórki wynosi około 0,7–1,1 µm; crococcaceae [1]. Bakteria ta została nazwana tworzy tetrady lub skupiska tetrad. Kolonie od nazwiska jej odkrywcy, słowackiego mikro- mogą być gładkie lub szorstkie, zazwyczaj wy- biologa Miroslava Kocura [2]. Po raz pierwszy pukłe; ich kolor waha się od bladokremowego bakteria ta została wyizolowana z pałki wąsko- do bladopomarańczowego [7]. Kocuria wy- Adres do korespondencji: listnej [3]. Jest to Gram-dodatnia, katalazodo- stępuje najczęściej na skórze, błonie śluzowej dr Dariusz Szczyra datnia, koagulazoujemna bakteria z gromady jamy ustnej i na innych błonach śluzowych. Zo- Katedra Chorób Wewnętrznych, Actinobacteria, rzędu Actinomycetales, rodziny stała ona również wykryta w drogach moczo- Diabetologii i Nefrologii w Zabrzu Micrococcaceae, rodzaju Kocuria [4–6]. Ogó- wych chorych z zakażeniem układu moczowe- Śląski Uniwersytet Medyczny w Katowicach ul. 3 Maja 13–15, 41–800 Zabrze łem opisano siedemnaście gatunków Kocuria, go [8]. Kocuria kristinae jest często izolowana e-mail: [email protected] a wśród nich Kocuria kristinae [1]. Kocuria kri- z kiełbas i innych produktów mięsnych. 182 Istnieje jednak coraz więcej doniesień krwinek (RBC, red blood cells) 2,74 × 106/µl]. vvIstnieje coraz więcej sugerujących zakażenia inwazyjne K. kristinae, Pleocytoza w płynie z jamy otrzewnowej wy- doniesień sugerujących zwłaszcza u chorych leczonych immunosupre- nosiła 1320/3. Włączono empiryczną antybio- zakażenia inwazyjne syjnie, u chorych na nowotwory złośliwe lub tykoterapię (ceftazydym 2 × 1 g i.v., następ- K. kristinae, zwłaszcza u bardzo małych dzieci [8, 9]. Bakteria ta może nie 4 × 250 mg i.v., cyprofloksacyna 100 mg u chorych leczonych wywoływać ostre zapalenie pęcherzyka żółcio- 1 × dziennie i.v.) oraz zlecono heparynę nie- immunosupresyjnie, wego, wsierdzia, ropne zapalenie stawów czy frakcjonowaną 1000 j. co 6 godzin dootrzew- u chorych na też zapalenie otrzewnej u chorych leczonych nowo. Pobrano płyn z jamy otrzewnowej oraz nowotwory złośliwe dializą otrzewnową (CADO) [10–13]. mocz na badanie bakteriologiczne. lub u bardzo małych Znane są antybiotyki bakteriobójcze zwal- W wykonanym posiewie płynu dializa- dzieci. Bakteria ta może czające tę bakterię, jednak zalecenia dotyczące cyjnego uzyskano wzrost bakterii Kocuria kri- wywoływać ostre leczenia zakażeń Kocuria kristinae nie zostały stinae wrażliwej na amikacynę, gentamycynę, zapalenie pęcherzyka jeszcze zdefiniowane. W większości opubliko- cyprofloksacynę, lewofloksacynę, erytromy- żółciowego, wsierdzia, wanych badań wskazuje się, że K. kristinae jest cynę, teikoplaninę, tetracyklinę, tigecyklinę, ropne zapalenie wrażliwa na wiele antybiotyków (wankomycy- trimetoprim z sulfametoksazolem oraz wan- stawów czy też na, linezolid, ryfampicyna, teikoplanina, cefo- komycynę. Rozpoczęto celowaną antybiotyko- zapalenie otrzewnej taksym, ampicylina/sulbaktam i meropenem). terapię wankomycyną z regularną kontrolą jej u chorych leczonych Wankomycyna jest najczęściej stosowanym stężenia w surowicy. W kolejnych badaniach dializą otrzewnowącc antybiotykiem w leczeniu tego zakażenia [14]. kontrolnych obserwowano wartości pleocy- W niniejszej pracy przedstawiono przypa- tozy maksymalnie 4167/3, a następnie spa- dek chorej ze schyłkową niewydolnością nerek dek do 189/3 oraz obniżenie stężenia CRP z dializacyjnym zapaleniem otrzewnej wywoła- w surowicy do 53,29 mg/l oraz leukocytozy do 3 nym przez Kocuria kristinae. 5,35 × 10 /µl. Chorej przetoczono również 8 j. vvW większości koncentratu krwinek czerwonych, uzyskując opublikowanych badań OPIS PRZYPADKU wzrost stężenia Hb do 9,7 g/dl, Ht do 30,3 g/dl wskazuje się, że 6 oraz liczby erytrocytów 3,61 × 10 /µl. K. kristinae jest Na Oddział Nefrologiczny Kliniki Chorób Po 20 dobach antybiotykoterapii zlecono wrażliwa na wiele Wewnętrznych, Diabetologii i Nefrologii SUM pierwszy kontrolny posiew płynu dializacyjne- antybiotyków w Zabrzu w dniu 13.02.2019 została przyjęta go, w którym nie uzyskano wzrostu patogenów (wankomycyna, 60-letnia chora na cukrzycę typu 2 i nadciśnie- chorobotwórczych. Kolejny posiew wykonano linezolid, ryfampicyna, nie tętnicze, z otyłością, z przewlekłą choro- w 26. dobie antybiotykoterapii, również uzysku- teikoplanina, bą nerek w stadium G5. U chorej od lutego jąc posiew jałowy. W 29. dobie hospitalizacji cefotaksym, 2018 roku rozpoczęto leczenie nerkozastęp- odstawiono wankomycynę. Pacjentka nie zgła- ampicylina/sulbaktam cze. W okresie 15.02–15.03.2018 pacjentkę szała dolegliwości, nie gorączkowała, utrzymała i meropenem). hemodializowano. W dniu 28.02.2018 wszcze- się pleocytoza < 100/3. Stan kliniczny chorej był Wankomycyna piono cewnik Tenckoffa, od 6.03.2018 u chorej dobry. Planowano wypis do domu. jest najczęściej rozpoczęto zaś leczenie metodą CADO. Niestety, w 35. dobie hospitalizacji stan stosowanym Chora została przyjęta na Oddział Nefro- kliniczny pacjentki się pogorszył. Wykonano antybiotykiem logiczny Kliniki Chorób Wewnętrznych, Dia- kolejny posiew dializatu, wyhodowano Strep- w leczeniu tego betologii i Nefrologii SUM w Zabrzu z powo- tococcus salivarius wrażliwy na klindamycynę, zakażeniacc du znacznego osłabienia, nudności, wymiotów, erytromycynę, lewofloksacynę, tigecyklinę, braku apetytu, z cechami odwodnienia oraz hi- wankomycynę oraz teikoplaninę. Rozpoczę- potonii (ciśnienie tętnicze 80/40 mm Hg) oraz to leczenie teikoplaniną w dawce 3 × 66 mg bólu brzucha. W wywiadzie odnotowano wy- dootrzewnowo, a po 8 dobach utrzymującego stępujący od kilku tygodni kaszel z odkrztusza- się wysokiego miana pleocytozy dawkę leku niem zielonkawej plwociny. Dializat po wymia- zwiększono do 3 × 100 mg dootrzewnowo. nie był mętny o żółtawym zabarwieniu. Miesiąc W 46. dobie pobrano posiew dializatu; nie uzy- wcześniej chora była leczona z powodu zakaże- skano wzrostu patogenów chorobotwórczych, nia układu moczowego cyprofloksacyną. jednak pleocytoza wynosiła 879/3. W kolejnych W badaniach dodatkowych u pacjent- dobach utrzymywały się wysokie miana pleocy- ki stwierdzono wysokie wartości parametrów tozy. W 55. dobie hospitalizacji zadecydowa- stanu zapalnego [stężenie białka C-reaktyw- no o zakończeniu leczenia nerkozastępczego nego (CRP, C-reactive protein) 206 mg/dl], metodą dializy otrzewnowej, usunięto cewnik leukocytozę (11,2 × 103/µl) oraz niedokrwi- Tenckhoffa. W 57. dobie założono czasowy stość normocytarną [hemoglobina (Hb) 7 g/dl, cewnik hemodializacyjny do prawej żyły szyj- hematokryt (Ht) 22,8%, poziom czerwonych nej wewnętrznej i rozpoczęto leczenie hemo- Dariusz Szczyra, Władysław Grzeszczak, Dializacyjne zapalenie otrzewnej wywołane przez Kocuria kristinae 183 dializami. Chora kontynuuje tę formę leczenia wodu schyłkowej niewydolności nerek metodą pod kontrolą macierzystej stacji dializ. Zapla- CADO. W posiewie płynu z jamy otrzewnowej nowano ocenę możliwości powrotu do leczenia chorego stwierdzono obecność Kocuria kristi- metod dializy otrzewnowej za 3 miesiące. nae. Leczenie rozpoczęto od podania cefotak- symu (cefalosporyna III generacji) oraz tobra- DYSKUSJA mycyny (aminoglikozyd) (przez 48 godzin), a następnie po uzyskaniu wyników posiewu Na Oddział Nefrologiczny Kliniki Cho- z jamy brzusznej dootrzewnowo podawano cy- rób Wewnętrznych, Diabetologii i Nefrologii profloksacynę (chinolon II generacji — fluoro- trafiła 60-letnia letnia chora ze schyłkową nie- chinolol) z teikoplaminą (naturalny antybiotyk wydolnością nerek, leczona metodą CADO, glikopeptydowy, podobny do wankomycyny, z zapaleniem otrzewnej. Najczęściej izolowa- o silnych właściwościach lipofilnych) oraz do- nymi patogenami będącymi przyczynami zapa- żylnie amoksycyliną z kwasem klawulonowym. lenia otrzewnej są Staphylococcus aureus i inne Postępowanie terapeutyczne zakończyło się koagulazoujemne gronkowce, które należą sukcesem — chory wyzdrowiał. do flory fizjologicznej bytującej na skórze [9]. Cheung i wsp. [16] opisali z kolei mężczy- Dializacyjne zapalenie otrzewnej należy podej- znę w wieku 69 lat, leczonego z powodu schył- rzewać zawsze, gdy chory zgłasza bóle brzucha kowej niewydolności nerek metodą CADO. lub wyciek mętnego płynu. Rozpoznanie ustala W posiewie płynu z jamy otrzewnowej chorego się, kiedy spełnione są dwa z trzech kryteriów: również stwierdzono
Recommended publications
  • Kaistella Soli Sp. Nov., Isolated from Oil-Contaminated Soil
    A001 Kaistella soli sp. nov., Isolated from Oil-contaminated Soil Dhiraj Kumar Chaudhary1, Ram Hari Dahal2, Dong-Uk Kim3, and Yongseok Hong1* 1Department of Environmental Engineering, Korea University Sejong Campus, 2Department of Microbiology, School of Medicine, Kyungpook National University, 3Department of Biological Science, College of Science and Engineering, Sangji University A light yellow-colored, rod-shaped bacterial strain DKR-2T was isolated from oil-contaminated experimental soil. The strain was Gram-stain-negative, catalase and oxidase positive, and grew at temperature 10–35°C, at pH 6.0– 9.0, and at 0–1.5% (w/v) NaCl concentration. The phylogenetic analysis and 16S rRNA gene sequence analysis suggested that the strain DKR-2T was affiliated to the genus Kaistella, with the closest species being Kaistella haifensis H38T (97.6% sequence similarity). The chemotaxonomic profiles revealed the presence of phosphatidylethanolamine as the principal polar lipids;iso-C15:0, antiso-C15:0, and summed feature 9 (iso-C17:1 9c and/or C16:0 10-methyl) as the main fatty acids; and menaquinone-6 as a major menaquinone. The DNA G + C content was 39.5%. In addition, the average nucleotide identity (ANIu) and in silico DNA–DNA hybridization (dDDH) relatedness values between strain DKR-2T and phylogenically closest members were below the threshold values for species delineation. The polyphasic taxonomic features illustrated in this study clearly implied that strain DKR-2T represents a novel species in the genus Kaistella, for which the name Kaistella soli sp. nov. is proposed with the type strain DKR-2T (= KACC 22070T = NBRC 114725T). [This study was supported by Creative Challenge Research Foundation Support Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Education (NRF- 2020R1I1A1A01071920).] A002 Chitinibacter bivalviorum sp.
    [Show full text]
  • Identification of 129 Micrococcaceae Strains Isolated from Food of Animal Origin C
    Identification of 129 Micrococcaceae strains isolated from food of animal origin C. Delarras, C. Guichaoua and M.-P. Caprais Code words: Staphylococcus- nitrofurantoin- aurease- ID 32 STAPH Tab. 1: List of 26 biochemical tests in the ID 32 STAPH-system - numerical identification Reaction/ Test Reaction/ Test substrate substrate 129 strains of Micrococcaceae novobiocin (5 11g/ml), 13 to 44% Urease URE Cellobiose (F) GEL were isolated from food of animal were identified with negative dis­ Aginin dihydrolase ADH Acetoin (production) VP origin (minced meat, cakes with cordant tests using this mi­ Ornithin decarboxylase ODC Nitrat (reduction) NIT confectioner's custard) on Baird­ cromethod. 44% produced no ac­ Esculin (hydrolysis) ESC B Galactosidase B GAL Glucose (F) GLU Arginin arylamidase ArgA Parker medium. etoin, 35 % had no urease and Fructose (F) FRU Alkaline phosphatase PAL 15 % no arginine dihydrolase. Maltose (F) MAL Pyrrolidonyl Arylamidase PyrA 120 were Staphylococcus and 9 Mannose (F) MNE Novobiocin (Resistance) NOVO Lactose (F) LAC Sucrose (F) SAC Micrococcus, according to the 10 48 Staphylococcus strains (40 %) Trehalose (F) TRE N-Acetyl Glucosamine (F) NAG 32 STAPH-System (1989). The re­ were identified as human coagula­ Mannitol (F) MAN Turanose (F) TUR sults were analyzed using a com­ se negative Staphylococcus spe­ Raffinose (F) RAF Arabinose (F) ARA Ribose (F) RIB B Glucoronidase B GUR puter program. cies (strains: 39; species: 9) or as animal species (strains: 4; spe­ (F) ~ Fermentation 60% of these 120 Staphylococcus cies: 1). 5 were Staphylococcus strains of animal origin were co­ sp S. epidermidis and S. warneri - similar colonies, but without reading of the biochemical tests agulase positive S.
    [Show full text]
  • Kocuria Spp. in Foods: Biotechnological Uses and Risks for Food Safety
    Review Article APPLIED FOOD BIOTECHNOLOGY, 2021, 8 (2):79-88 pISSN: 2345-5357 Journal homepage: www.journals.sbmu.ac.ir/afb eISSN: 2423-4214 Kocuria spp. in Foods: Biotechnological Uses and Risks for Food Safety Gustavo Luis de Paiva Anciens Ramos1, Hilana Ceotto Vigoder2, Janaina dos Santos Nascimento2* 1- Department of Bromatology, Universidade Federal Fluminense (UFF), Brazil. 2- Department of Microbiology, Instituto Federal de Educação, Ciência e Tecnologia do Rio de Janeiro (IFRJ), Brazil. Article Information Abstract Article history: Background and Objective: Bacteria of the Genus Kocuria are found in several Received 4 June 2020 environments and their isolation from foods has recently increased due to more Revised 17 Aug 2020 precise identification protocols using molecular and instrumental techniques. This Accepted 30 Sep 2020 review describes biotechnological properties and food-linked aspects of these bacteria, which are closely associated with clinical cases. Keywords: ▪ Kocuria spp. Results and Conclusion: Kocuria spp. are capable of production of various enzymes, ▪ Gram-positive cocci being potentially used in environmental treatment processes and clinics and ▪ Biotechnological potential production of antimicrobial substances. Furthermore, these bacteria show desirable ▪ Biofilm enzymatic activities in foods such as production of catalases and proteases. Beneficial ▪ Antimicrobial resistance interactions with other microorganisms have been reported on increased production of enzymes and volatile compounds in foods. However, there are concerns about the *Corresponding author: Janaina dos Santos Nascimento, bacteria, including their biofilm production, which generates technological and safety Department of Microbiology, problems. The bacterial resistance to antimicrobials is another concern since isolates Instituto Federal de Educação, of this genus are often resistant or multi-resistant to antimicrobials, which increases Ciência e Tecnologia do Rio de the risk of gene transfer to pathogens of foods.
    [Show full text]
  • Data of Read Analyses for All 20 Fecal Samples of the Egyptian Mongoose
    Supplementary Table S1 – Data of read analyses for all 20 fecal samples of the Egyptian mongoose Number of Good's No-target Chimeric reads ID at ID Total reads Low-quality amplicons Min length Average length Max length Valid reads coverage of amplicons amplicons the species library (%) level 383 2083 33 0 281 1302 1407.0 1442 1769 1722 99.72 466 2373 50 1 212 1310 1409.2 1478 2110 1882 99.53 467 1856 53 3 187 1308 1404.2 1453 1613 1555 99.19 516 2397 36 0 147 1316 1412.2 1476 2214 2161 99.10 460 2657 297 0 246 1302 1416.4 1485 2114 1169 98.77 463 2023 34 0 189 1339 1411.4 1561 1800 1677 99.44 471 2290 41 0 359 1325 1430.1 1490 1890 1833 97.57 502 2565 31 0 227 1315 1411.4 1481 2307 2240 99.31 509 2664 62 0 325 1316 1414.5 1463 2277 2073 99.56 674 2130 34 0 197 1311 1436.3 1463 1899 1095 99.21 396 2246 38 0 106 1332 1407.0 1462 2102 1953 99.05 399 2317 45 1 47 1323 1420.0 1465 2224 2120 98.65 462 2349 47 0 394 1312 1417.5 1478 1908 1794 99.27 501 2246 22 0 253 1328 1442.9 1491 1971 1949 99.04 519 2062 51 0 297 1323 1414.5 1534 1714 1632 99.71 636 2402 35 0 100 1313 1409.7 1478 2267 2206 99.07 388 2454 78 1 78 1326 1406.6 1464 2297 1929 99.26 504 2312 29 0 284 1335 1409.3 1446 1999 1945 99.60 505 2702 45 0 48 1331 1415.2 1475 2609 2497 99.46 508 2380 30 1 210 1329 1436.5 1478 2139 2133 99.02 1 Supplementary Table S2 – PERMANOVA test results of the microbial community of Egyptian mongoose comparison between female and male and between non-adult and adult.
    [Show full text]
  • Final Screening Assessment of Micrococcus Luteus Strain ATCC 4698
    Final Screening Assessment of Micrococcus luteus strain ATCC 4698 Environment and Climate Change Canada Health Canada February 2018 Cat. No.: En14-313/2018E-PDF ISBN 978-0-660-24725-0 Information contained in this publication or product may be reproduced, in part or in whole, and by any means, for personal or public non-commercial purposes, without charge or further permission, unless otherwise specified. You are asked to: • Exercise due diligence in ensuring the accuracy of the materials reproduced; • Indicate both the complete title of the materials reproduced, as well as the author organization; and • Indicate that the reproduction is a copy of an official work that is published by the Government of Canada and that the reproduction has not been produced in affiliation with or with the endorsement of the Government of Canada. Commercial reproduction and distribution is prohibited except with written permission from the author. For more information, please contact Environment and Climate Change Canada’s Inquiry Centre at 1-800-668-6767 (in Canada only) or 819-997-2800 or email to [email protected]. © Her Majesty the Queen in Right of Canada, represented by the Minister of the Environment and Climate Change, 2016. Aussi disponible en français ii Synopsis Pursuant to paragraph 74(b) of the Canadian Environmental Protection Act, 1999 (CEPA), the Minister of the Environment and the Minister of Health have conducted a screening assessment of Micrococcus luteus (M. luteus) strain ATCC 4698. M. luteus strain ATCC 4698 is a bacterial strain that shares characteristics with other strains of the species. M.
    [Show full text]
  • Kocuria Palustris Sp. Nov, and Kocuria Rhizophila Sp. Nov., Isolated from the Rhizoplane of the Narrow-Leaved Cattail (Typha Angustifolia)
    International Journal of Systematic Bacteriology (1999),49, 167-1 73 Printed in Great Britain Kocuria palustris sp. nov, and Kocuria rhizophila sp. nov., isolated from the rhizoplane of the narrow-leaved cattail (Typha angustifolia) Gabor KOV~CS,’Jutta Burghardt,’ Silke Pradella,’ Peter Schumann,’ Erko Stackebrandt’ and KAroly Mhrialigeti’ Author for correspondence: Erko Stackebrandt. Tel: +49 531 2616 352. Fax: +49 531 2616 418. e-mail : [email protected] Department of Two Gram-positive, aerobic spherical actinobacteria were isolated from the Microbiology, Edtvds rhizoplane of narrow-leaved cattail (lypha angustifolia) collected from a Lordnd University, Budapest, Hungary floating mat in the Soroksdr tributary of the Danube river, Hungary. Sequence comparisons of the 16s rDNA indicated these isolates to be phylogenetic 2 DSMZ-German Collection of Microorganisms and neighbours of members of the genus Kocuria, family Micrococcaceae, in which Cell Cultures GmbH, they represent two novel lineages. The phylogenetic distinctness of the two Mascheroder Weg 1b, organisms TA68l and TAGA27l was supported by DNA-DNA similarity values of 38124 Braunschweig, Germany less than 55% between each other and with the type strains of Kocuria rosea, Kocuria kristinae and Kocuria varians. Chemotaxonomic properties supported the placement of the two isolates in the genus Kocuria. The diagnostic diamino acid of the cell-wall peptidoglycan is lysine, the interpeptide bridge is composed of three alanine residues. Predominant menaquinone was MK-7(H2). The fatty acid pattern represents the straight-chain saturated iso-anteiso type. Main fatty acid was anteiso-C,,,,. The phospholipids are diphosphatidylglycerol, phosphatidylglycerol and an unknown component. The DNA base composition of strains TA68l and TAGA27l is 69.4 and 69-6 mol% G+C, respectively.
    [Show full text]
  • Complete Genome Sequence of Kocuria Rhizophila BT304, Isolated from the Small Intestine of Castrated Beef Cattle Tae Woong Whon†, Hyun Sik Kim† and Jin‑Woo Bae*
    Whon et al. Gut Pathog (2018) 10:42 https://doi.org/10.1186/s13099-018-0270-9 Gut Pathogens GENOME REPORT Open Access Complete genome sequence of Kocuria rhizophila BT304, isolated from the small intestine of castrated beef cattle Tae Woong Whon†, Hyun Sik Kim† and Jin‑Woo Bae* Abstract Background: Members of the species Kocuria rhizophila, belonging to the family Micrococcaceae in the phylum Actinobacteria, have been isolated from a wide variety of natural sources, such as soil, freshwater, fsh gut, and clinical specimens. K. rhizophila is important from an industrial viewpoint, because the bacterium grows rapidly with high cell density and exhibits robustness at various growth conditions. However, the bacterium is an opportunistic pathogen involved in human infections. Here, we sequenced and analyzed the genome of the K. rhizophila strain BT304, isolated from the small intestine of adult castrated beef cattle. Results: The genome of K. rhizophila BT304 consisted of a single circular chromosome of 2,763,150 bp with a GC content of 71.2%. The genome contained 2359 coding sequences, 51 tRNA genes, and 9 rRNA genes. Sequence annotations with the RAST server revealed many genes related to amino acid, carbohydrate, and protein metabolism. Moreover, the genome contained genes related to branched chain amino acid biosynthesis and degradation. Analysis of the OrthoANI values revealed that the genome has high similarity (> 97.8%) with other K. rhizophila strains, such as DC2201, FDAARGOS 302, and G2. Comparative genomic analysis further revealed that the antibiotic properties of K. rhizophila vary among the strains. Conclusion: The relatively small number of virulence-related genes and the great potential in production of host available nutrients suggest potential application of the BT304 strain as a probiotic in breeding beef cattle.
    [Show full text]
  • Productivity of Bioactive Compounds in Streptomyces Species Isolated from Nagasaki Marine Environments
    Actinomycetologica (2009) 23:16–20 Copyright Ó 2009 The Society for Actinomycetes Japan VOL. 23, NO. 1 NOTE Productivity of Bioactive Compounds in Streptomyces Species Isolated from Nagasaki Marine Environments. Takuji Nakashima1;2;4Ã, Kozue Anzai1, Rieko Suzuki1, Natsumi Kuwahara1, Satoshi Takeshita3, Akihiko Kanamoto4 and Katsuhiko Ando1 1NITE Biotechnology Development Center (NBDC), National Institute of Technology and Evaluation (NITE), 2-5-8 Kazusakamatari, Kisarazu-shi, Chiba 292-0818, Japan 2Kitasato Institute for Life Scieneces, Kitasato University, 5-9-1 Shirokane, Minato-ku, Tokyo 108-8641, Japan 3Joint Research Center, Nagasaki University, 1-14 Bunkyo-machi, Nagasaki 852-8521, Japan 4OP Bio Factory Co., Ltd., 3-2-1, Tonoshiro, Ishigaki, Okinawa 901-2102, Japan (Received Nov. 25, 2008 / Accepted Feb. 3, 2009 / Published Mar. 31, 2009) Based on a Blast search of 16S rRNA sequences of Streptomyces from marine environments of Nagasaki, Japan, 64 isolates showed the highest similarity scores with NBRC strains. Only 5 out of these 64 strains showed exactly the same biological profiles as the approximately 900 strains preserved at NBRC strains, while the remaining isolates showed different biological profiles. This suggests that the genus Streptomyces has the ability to produce a wide variety of unknown bioactive metabolites. Actinomycetes that grow extensively in soils containing About 800 actinomycete strains were isolated from rich organic matter are good sources of natural products. marine environments around Nagasaki Prefecture, Japan, In fact, it has been estimated that approximately two- including the areas of Omura-Bay, Iki island and the thirds of naturally occurring antibiotics are originated from Shimabara peninsula (Anzai et al., 2008a).
    [Show full text]
  • Study of the Micrococcaceae and Staphylococcaceae Throughout the Manufacture of Dry-Cured Lacón (A Spanish Traditional Meat Product) Made Without Or with Additives
    www.ccsenet.org/jfr Journal of Food Research Vol. 1, No. 1; February 2012 Study of the Micrococcaceae and Staphylococcaceae throughout the Manufacture of Dry-Cured Lacón (a Spanish Traditional Meat Product) Made without or with Additives José M. Lorenzo, María C. García Fontán, María Gómez, Sonia Fonseca, Inmaculada Franco & Javier Carballo (corresponding author) Área de Tecnología de los Alimentos, Facultad de Ciencias de Ourense Universidad de Vigo, Ourense 32004, Spain Tel.: 34-988-387-052 E-mail: [email protected] Received: December 2, 2011 Accepted: December 16, 2011 Published: February 1, 2012 doi:10.5539/jfr.v1n1p200 URL: http://dx.doi.org/10.5539/jfr.v1n1p200 This research was supported by the Xunta de Galicia (The Regional Government) (Projects 38301B98 and PGIDT01PXI38301PR). José M. Lorenzo was supported by a Pre-doctoral fellowship from the Xunta de Galicia. Abstract Micrococcaceae and Staphylococcaceae were enumerated (on SPC agar + 7.5% NaCl) in samples from the surface and the interior of pieces of dry-cured lacón (a Spanish traditional meat product), at different stages of the manufacturing process, and from six different batches (three made without and three with additives -glucose, sodium nitrite, sodium nitrate, sodium ascorbate, and sodium citrate-). The use of additives did not affect the counts or evolution of this microbial group. For four batches (two without and two with additives), a total of 335 strains were isolated and identified by classical methods. Staphylococcus xylosus was the most abundant and constant species throughout manufacture of the batches made without and with additives. Other species of staphylococci were isolated, including: Staph.
    [Show full text]
  • Pathogen Safety Data Sheet Section 1 - Infectious Agent Agent Name: Kocuria Rhizophila Agent Type: Bacteria Taxonomy: Family: Micrococcaceae Genus: Kocuria Species: K
    Pathogen Safety Data Sheet Section 1 - Infectious Agent Agent Name: Kocuria rhizophila Agent Type: Bacteria Taxonomy: Family: Micrococcaceae Genus: Kocuria Species: K. rhizophila Subspecies/Strain/Clonal Isolate: Synonym/Cross Reference Micrococcus luteus Characteristics Brief Description: K. rhizophila are grampositive, oxidasepositive, and strictly aerobic cocci belonging to the family Micrococcaceae. They usually occur in irregular clusters, tetrads, and pairs, where individual cells are about 1 to 1.8 μm in diameter and are usually nonmotile and non-spore forming. Properties: Catalase-positive and coagulase-negative. Section 2 - Hazard Identification Pathogenicity/Toxicity Length of the illness/disease associated with the infectious agent in humans and animals (focusing primarily on animals of economic importance). List of the symptoms of the disease, including severity and prevalence. Mortality rate of the disease. Variations of the disease and clinical presentations. Other ailments associated with the disease. Potential acute and chronic effects should be discussed if this information is available. Predisposing Factors: Immunocompromised with serious underlying disease. Communicability Not known to be transmitted directly from person to person. Transmission usually occurs through contaminated surfaces and/or objects. Epidemiology Micrococcus spp. and closely related genera, occur worldwide and are ubiquitous. They are found on the skin of humans and other animals and in soil, marine and fresh water, plants, fomites, dust, and air. In humans, they are most frequently found on the exposed skin of face, arms, hands, and legs. M. luteus is most common and is found in nature and in clinical specimens. One study (of 115 people) reports that up to 96% of people living in 18 states of USA carried micrococci, with the majority being K.
    [Show full text]
  • Access to Electronic Thesis
    Access to Electronic Thesis Author: Mohammed Almalki Thesis title: Molecular Identification and Characterisation of Extremely Acid Tolerant Microorganisms Isolated From Rivelin and Limb Valleys Qualification: PhD This electronic thesis is protected by the Copyright, Designs and Patents Act 1988. No reproduction is permitted without consent of the author. It is also protected by the Creative Commons Licence allowing Attributions-Non-commercial-No derivatives. If this electronic thesis has been edited by the author it will be indicated as such on the title page and in the text. Molecular Identification and Characterisation of Acid Tolerant Microorganisms Isolated from Rivelin and Limb Valleys By Mohammed Almalki MSc., King Saud University, Riyadh, Saudi Arabia MPhil, University of Sheffield, England Thesis submitted in part fulfillment of the requirement for the degree of Doctor of Philosophy Department of Molecular Biology and Biotechnology The University of Sheffield, UK January 2012 Dedication To my dear parents, my loving wife ‘Sarah’ and my sweet daughters ‘Layan, Layali and Lora’ To my brothers and sisters ii Acknowledgements First of all, my thanks to Almighty Allah who blessed me with countless great blessing which enabled me to carry out practical researches and writing up this thesis. I would like to express my sincere thanks to my supervisor Dr. Jim Gilmour for his supervision, advice, guidance, support and valuable criticism during this study. Also my deep thanks to Professor Milton Wainwright and Professor Julie Gray for their advice and help in this project. I am grateful to Professor Mike Williamson and Mrs. Andrea Hounslow for their cooperation and assistance in NMR analysis.
    [Show full text]
  • Bacterial Diversity and Antibiotic Susceptibility of Sparus Aurata from Aquaculture
    microorganisms Article Bacterial Diversity and Antibiotic Susceptibility of Sparus aurata from Aquaculture Vanessa Salgueiro 1,2, Vera Manageiro 1,2 , Narcisa M. Bandarra 3,Lígia Reis 1, Eugénia Ferreira 1,2 and Manuela Caniça 1,2,* 1 National Reference Laboratory of Antibiotic Resistances and Healthcare Associated Infections (NRL-AMR-HAI), Department of Infectious Diseases, National Institute of Health Dr. Ricardo Jorge, 1649-016 Lisbon, Portugal; [email protected] (V.S.); [email protected] (V.M.); [email protected] (L.R.); [email protected] (E.F.) 2 Centre for the Studies of Animal Science, Institute of Agrarian and Agri-Food Sciences and Technologies, Oporto University, 4051-401 Oporto, Portugal 3 Department of Sea and Marine Resources, Portuguese Institute for the Sea and Atmosphere (IPMA, IP), 1749-077 Lisbon, Portugal; [email protected] * Correspondence: [email protected]; Tel.: +351-217-519-246 Received: 3 August 2020; Accepted: 28 August 2020; Published: 2 September 2020 Abstract: In a world where the population continues to increase and the volume of fishing catches stagnates or even falls, the aquaculture sector has great growth potential. This study aimed to contribute to the depth of knowledge of the diversity of bacterial species found in Sparus aurata collected from a fish farm and to understand which profiles of diminished susceptibility to antibiotics would be found in these bacteria that might be disseminated in the environment. One hundred thirty-six bacterial strains were recovered from the S. aurata samples. These strains belonged to Bacillaceae, Bacillales Family XII.
    [Show full text]