The Length-Weight, Length-Length Relationship
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Fresh- and Brackish-Water Cold-Tolerant Species of Southern Europe: Migrants from the Paratethys That Colonized the Arctic
water Review Fresh- and Brackish-Water Cold-Tolerant Species of Southern Europe: Migrants from the Paratethys That Colonized the Arctic Valentina S. Artamonova 1, Ivan N. Bolotov 2,3,4, Maxim V. Vinarski 4 and Alexander A. Makhrov 1,4,* 1 A. N. Severtzov Institute of Ecology and Evolution, Russian Academy of Sciences, 119071 Moscow, Russia; [email protected] 2 Laboratory of Molecular Ecology and Phylogenetics, Northern Arctic Federal University, 163002 Arkhangelsk, Russia; [email protected] 3 Federal Center for Integrated Arctic Research, Russian Academy of Sciences, 163000 Arkhangelsk, Russia 4 Laboratory of Macroecology & Biogeography of Invertebrates, Saint Petersburg State University, 199034 Saint Petersburg, Russia; [email protected] * Correspondence: [email protected] Abstract: Analysis of zoogeographic, paleogeographic, and molecular data has shown that the ancestors of many fresh- and brackish-water cold-tolerant hydrobionts of the Mediterranean region and the Danube River basin likely originated in East Asia or Central Asia. The fish genera Gasterosteus, Hucho, Oxynoemacheilus, Salmo, and Schizothorax are examples of these groups among vertebrates, and the genera Magnibursatus (Trematoda), Margaritifera, Potomida, Microcondylaea, Leguminaia, Unio (Mollusca), and Phagocata (Planaria), among invertebrates. There is reason to believe that their ancestors spread to Europe through the Paratethys (or the proto-Paratethys basin that preceded it), where intense speciation took place and new genera of aquatic organisms arose. Some of the forms that originated in the Paratethys colonized the Mediterranean, and overwhelming data indicate that Citation: Artamonova, V.S.; Bolotov, representatives of the genera Salmo, Caspiomyzon, and Ecrobia migrated during the Miocene from I.N.; Vinarski, M.V.; Makhrov, A.A. -
Article Oxynoemacheilus Freyhofi, a New Nemacheilid Species (Teleostei, Nemacheilidae) from the Tigris Basin, Iran
FishTaxa (2016) 1(2): 94-107 E-ISSN: 2458-942X Journal homepage: www.fishtaxa.com © 2016 FISHTAXA. All rights reserved Article Oxynoemacheilus freyhofi, a new nemacheilid species (Teleostei, Nemacheilidae) from the Tigris basin, Iran Arash JOULADEH-ROUDBAR, Soheil EAGDERI*, Tayyeb HOSSEINPOUR Department of Fisheries, Faculty of Natural Resources, University of Tehran, Karaj, P.O. Box 4111, Iran. *Corresponding author: E-mail: [email protected] Abstract A new species of Nemacheilidae, Oxynoemacheilus freyhofi sp. nov. is described from the Roudbar River, a tributary of the Bakhtiyari River, Karoun River drainage, Iran. The species differs from its congeners in the combination of the following characters: dorsal fin with 10½ branched rays; forked caudal fin with equal size of lobes; slender and compressed caudal peduncle and complete lateral line; very small or absent median incision in upper lip; absence of suborbital groove in male. Oxynoemacheilus freyhofi is also distinguished from its congeners by a K2P distance of 4.5% to O. argyrogramma and 12.9% to O. bergianus. Keywords: Freshwater fish, Taxonomy, Morphology, COI, Loach. Zoobank: urn:lsid:zoobank.org:pub:B9CC32FB-1251-4518-9F89-EA013F203070 urn:lsid:zoobank.org:act:3A899D53-95FE-44C2-A624-249AA8A77946 Introduction Stone loaches, family Nemacheilidae, are small fishes occurring in fresh waters of Asia and its islands, Europe, and northeast Africa (Coad 2015). They inhabit a variety of water bodies from turbulent mountain streams to salty rivers in dry lowlands (Mafakheri et al. 2015a, b, 2016). Nemacheilidae has about 48 genera and more than 661 species (Nelson et al. 2016; Eschmeyer and Fong 2011; Freyhof et al. -
Detection of Rare and Invasive Freshwater Fish Species Using Edna
Biochemical Systematics and Ecology 67 (2016) 29e36 Contents lists available at ScienceDirect Biochemical Systematics and Ecology journal homepage: www.elsevier.com/locate/biochemsyseco Detection of rare and invasive freshwater fish species using eDNA pyrosequencing: Lake Iznik ichthyofauna revised * Emre Keskin , Esra Mine Unal, Hasan Hüseyin Atar Ankara University Faculty of Agriculture Department of Fisheries and Aquaculture Evolutionary Genetics Laboratory (eGL), 06110 Dıs¸ kapı Ankara, Turkey article info abstract Article history: Assessment of fish biodiversity in freshwater environments is challenging, especially when Received 21 April 2016 rare species or species with low population densities exist. Environmental DNA is Received in revised form 16 May 2016 becoming a common tool in molecular ecology to detect target species found in the Accepted 22 May 2016 environment. Moreover, eDNA metabarcoding is now used to determine a complete list of Available online 30 May 2016 target organisms without any prior knowledge on the species inhabiting the environment. This study is the first environmental DNA study designed to assess complete ichthyofauna Keywords: of the largest lake in Marmara Region of Turkey. For this purpose, an eDNA metabarcoding eDNA Pyrosequencing approach enhanced with tagged primers according to sampling stations for a station fi Cytochrome b speci c species listing was used to revise the ichthyofauna of Lake Iznik. Results of Metabarcoding pyrosequencing data indicate the presence of 23 species in the lake, five of which are Freshwater fish reported for the first time. Short fragment of cytochrome b gene sequences amplified in this study were able to make identifications at species level and the eDNA metabarcoding approach was more cost effective and precise compared to conventional surveys. -
FAMILY Nemacheilidae Regan, 1911
FAMILY Nemacheilidae Regan, 1911 - stone loaches [=Nemachilinae, Adiposiidae, Lefuini, Yunnanilini, Triplophysini] GENUS Aborichthys Chaudhuri, 1913 - hillstream loaches Species Aborichthys boutanensis (McClelland, 1842) - Bolan hillstream loach [=kempi] Species Aborichthys cataracta Arunachalam et al., 2014 - Arunachal hillstream loach Species Aborichthys elongatus Hora, 1921 - Reang hillstream loach Species Aborichthys garoensis Hora, 1925 - Tura hillstream loach Species Aborichthys kempi Chaudhuri, 1913 - Egar hillstream loach Species Aborichthys tikaderi Barman, 1985 - Namdapha hillstream loach Species Aborichthys verticauda Arunchalam et al., 2014 - Ranga hillstream loach Species Aborichthys waikhomi Kosygin, 2012 - Bulbulia stone loach GENUS Acanthocobitis Peters, 1861 - loaches Species Acanthocobitis pavonacea (McClelland, 1839) - pavonacea loach [=longipinnis] GENUS Afronemacheilus Golubtsov & Prokofiev, in Prokofiev, 2009 - stone loaches Species Afronemacheilus abyssinicus (Boulenger, 1902) - Bahardar stone loach Species Afronemacheilus kaffa Prokofiev & Golubtsov, 2013 - kaffa stone loach GENUS Barbatula Linck, 1790 - stone loaches [=Cobites, Orthrias] Species Barbatula altayensis Zhu, 1992 - Kelang stone loach Species Barbatula barbatula (Linnaeus, 1758) - stone loach [=anglicana, blackiana, caucasicus, erythrinna, fuerstenbergii, furstenbergii, hispanica B, hispanica L, markakulensis, parisiensis, taurica, pictava, pironae, vardarensis, variabilis] Species Barbatula conilobus Prokofiev, 2016 - Bogd loach Species Barbatula dgebuadzei -
Karadeniz Fen Bilimleri Dergisi First Record of Oxynoemacheilus Angorae
Karadeniz Fen Bilimleri Dergisi, 11(1), 161-167, 2021. DOI: 10.31466/kfbd.905681 Karadeniz Fen Bilimleri Dergisi KFBD The Black Sea Journal of Sciences ISSN (Online): 2564-7377 Araştırma Makalesi / Research Article First Record of Oxynoemacheilus angorae (Steindachner, 1897) from Perşembe Plateau Meandering Streams in the Ordu-Turkey Serdar YEDİER1*, Derya BOSTANCI2, Nazmi POLAT3 Abstract In the current study, for the first time, Oxynoemacheilus angorae samples were caught from Perşembe Plateau Meandering Streams in the Ordu-Turkey (Middle Black Sea Region). In the field studies, fifteen O. angorae individuals were sampled using electrofishing gear. After the captured samples were photographed, they were placed in fish transfer containers and transferred to the laboratory. Some metric numbers and meristic characteristics of the samples brought to the laboratory were recorded. The mean value of body weight of fish samples was determined as 2.39±0.576 g. The mean values of standard length, fork length and total length of the samples were determined as 5.48±0.49 cm, 6.23±0.54 cm and 6.56±0.59 cm, respectively. The result of this study, new fish species was added to freshwater fish fauna of Ordu and also provided a new data for the distribution areas O. angorae in Turkey. Keywords: Oxynoemacheilus angorae, Perşembe Plateau Meandering Streams, freshwater fish fauna, Ordu-Turkey. Oxynoemacheilus angorae (Steindachner, 1897) Türünün Perşembe Yaylası Menderesleri Ordu-Türkiye’den İlk Kaydı Öz Bu çalışmada, Oxynoemacheilus angorae türü Perşembe Yaylası Menderesleri Ordu-Türkiye (Orta Karadeniz Bölgesi)’den ilk kez kaydedilmiştir. Arazi çalışmalarında, on beş adet O. angorae bireyi elektroşoker yardımıyla yakalanmıştır. -
Karyological and Molecular Analysis of Three Endemic Loaches (Actinopterygii: Cobitoidea) from Kor River Basin, Iran
Molecular Biology Research Communications 2015;4(1):1-13 MBRC Original Article Open Access Karyological and molecular analysis of three endemic loaches (Actinopterygii: Cobitoidea) from Kor River basin, Iran Hamid Reza Esmaeili1,*, Zeinab Pirvar1, Mehragan Ebrahimi1, Matthias F. Geiger2 1) Department of Biology, College of Sciences, Shiraz University, Shiraz, Iran 2) Zoological Research Museum Alexander Koenig, Leibniz Institute for Animal Biodiversity, Adenauerallee, Germany ABSTRACT This study provides new data on chromosomal characteristics and DNA barcoding of three endemic loaches of Iran: spiny southern loach Cobitis linea (Heckel, 1847), Persian stream loach Oxynoemacheilus persa (Heckel, 1848) and Tongiorgi stream loach Oxynoemacheilus tongiorgii (Nalbant & Bianco, 1998). The chromosomes of these fishes were investigated by examining metaphase chromosome spreads obtained from epithelial gill and kidney cells. The diploid chromosome numbers of all three species were 2n=50. The karyotypes of C. linea consisted of 4M + 40SM + 6ST, NF=94; of O. persa by 20M + 22SM + 8ST, NF=90 and of O. tongiorgii by 18M + 24SM + 8ST, NF= 92. Sex chromosomes were cytologically indistinguishable in these loaches. Maximum likelihood-based estimation of the phylogenetic relationships based on the COI barcode region clearly separates the three Iranian loach species of the Kor River basin. All species distinguished by morphological characters were recovered as monophyletic clades by the COI barcodes. The obtained results could be used for population studies,Archive management and conservatio n programs.of SID Key words: Loaches; Phylogenetic relationships; COI barcode region; Idiogram; Iran INTRODUCTION The confirmed freshwater ichthyofauna of Iran are represented by 202 species in 104 genera, 28 families, 17 orders and 3 classes found in 19 different basins [1]. -
Phylogeny of Oxynoemacheilus Bergianus (Derzhavin, 1934) (Nemacheilidae: Cypriniformes) in Iran Using Osteological Characteristics
FishTaxa (2017) 2(4): 201-209 E-ISSN: 2458-942X Journal homepage: www.fishtaxa.com © 2017 FISHTAXA. All rights reserved Phylogeny of Oxynoemacheilus bergianus (Derzhavin, 1934) (Nemacheilidae: Cypriniformes) in Iran using osteological characteristics Parya JALILI1, Soheil EAGDERI*1, Hadi POORBAGHER1, Burak SEÇER2 1Department of Fisheries, Faculty of Natural Resources, University of Tehran, Karaj, Iran. 2Nevşehir Hacı Bektaş Veli Üniversitesi, Faculty of Art and Sciences, Department of Biology, 50300, Nevşehir, Turkey. Corresponding author: *E-mail: [email protected] Abstract The phylogenetic relationships of Oxynoemacheilus bergianus from three Iranian inland waters, i.e. the Caspian Sea, Namak and Urmia Lake basins were investigated using osteological characters. 21 osteological characters were used and Garra rufa was the out-groups. A phylogenetic analysis based on the described characters resulted four most-parsimonious cladograms (36 steps, CI=0.69, RI=0.5). The strict consensus tree showed that the populations of O. bergianus are monophyletic group. It was confirmed that the populations of Qareh- chai, Qezel-ozan and Sefid rivers form a sister group to other examined populations of O. bergianus. Keywords: Loach, Osteology, Phylogenetic relationships, Cladistic. Zoobank: urn:lsid:zoobank.org:pub:9C28386F-F00B-446D-AB5F-063962DD9F82 Introduction Oxynoemacheilus bergianus (Derzhavin, 1934), a nemacheilid species, was described from the Sefid River (southern Caspian Sea basin) and is also found in the Namak Lake, Urmia Lake and probably in Dasht-e Kavir basins of Iranian inland waters (Bănărescu and Nalbant 1966; Saadati 1977; Holčík and Oláh 1992; Abbasi et al. 1999; Esmaeili et al. 2017). Banarescu et al. (1978) considered this species as a subspecies of O. -
Freshwater Fishes and Lampreys of Greece
HELLENIC CENTRE FOR MARINE RESEARCH Monographs on Marine Sciences No. 8 Freshwater Fishes and Lampreys of Greece An Annotated Checklist Barbieri R., Zogaris S., Kalogianni E., Stoumboudi M. Th, Chatzinikolaou Y., Giakoumi S., Kapakos Y., Kommatas D., Koutsikos N., Tachos, V., Vardakas L. & Economou A.N. 2015 Freshwater Fishes and Lampreys of Greece An Annotated Checklist HELLENIC CENTRE FOR MARINE RESEARCH Monographs on Marine Sciences No. 8 Freshwater Fishes and Lampreys of Greece An Annotated Checklist Barbieri R., Zogaris S., Kalogianni E., Stoumboudi M. Th, Chatzinikolaou Y., Giakoumi S., Kapakos Y., Kommatas D., Koutsikos N., Tachos, V., Vardakas L. & Economou A.N. 2015 Monographs on Marine Sciences 8 Authors: Barbieri R., Zogaris S., Kalogianni E., Stoumboudi M.Th., Chatzinikolaou Y., Giakoumi S., Kapakos Y., Kommatas D., Koutsikos N., Tachos V., Vardakas L. & Economou A.N. Fish drawings: R. Barbieri English text editing: S. Zogaris, E. Kalogianni, E. Green Design and production: Aris Vidalis Scientific reviewers: Jörg Freyhof, Dimitra Bobori Acknowledgements We would like to thank the following people for significant assistance in the field, for providing unpublished information, and/or support during the preparation of this work: Apostolos Apostolou, Nicolas Bailly, Bill Beaumont, Dimitra Bobori, Giorgos Catsadorakis, Charalambos Daoulas, Elias Dimitriou, Panayiotis Dimopoulos, Uwe Dussling, Panos S. Economidis, Jörg Freyhof, Zbigniew Kaczkowski, Nektarios Kalaitzakis, Stephanos Kavadas, Maurice Kottelat, Emmanuil Koutrakis, David Koutsogianopoulos, Marcello Kovačić, Ioannis Leonardos, Danilo Mrdak, Theodoros Naziridis, Elena Oikonomou, Kostas G. Papakonstatinou, Ioannis Paschos, Kostas Perdikaris, Olga Petriki, Radek Šanda, Nikolaos Skoulikidis, Manos Sperelakis, Kostas Tsigenopoulos, Maarten Vanhove, Haris Vavalidis, Jasna Vukić , Brian Zimmerman and the HCMR library staff (Anavissos Attiki). -
Odete Marinho Gonçalves the Origin of Stomach
ODETE MARINHO GONÇALVES THE ORIGIN OF STOMACH VERTEBRATE AND THE PARADOX OF LOSS Tese de Candidatura ao grau de Doutor em Ciências Biomédicas submetida ao Instituto de Ciências Biomédicas Abel Salazar da Universidade do Porto. Orientador – Doutor Jonathan M. Wilson Categoria – Professor auxiliar/Investigador Afiliação – Universidade de Wilfrid Laurier, Waterloo, Canadá/ CIIMAR- Centro Interdisciplinar de Investigação marinha e ambiental. Coorientador – Doutor L. Filipe C. Castro Categoria – Investigador auxiliar Afiliação – CIIMAR- Centro Interdisciplinar de Investigação do mar e ambiente. Coorientador – Professor João Coimbra Categoria – Professor emérito/ Investigador Afiliação – ICBAS- Instituto de Ciências Biomédicas Abel Salazar/ CIIMAR- Centro Interdisciplinar de Investigação marinha e ambiental. This work was conducted in laboratory of Molecular Physiology (MP) at CIIMAR- Centro Interdisciplinar de Investigação Marinha e Ambiental. The animals were maintained at BOGA- Biotério de Organismos Aquáticos. The Chapter 5 of this thesis was partially developed at Station Biologique de Roscoff (France) in laboratory of Dr. Sylvie Mazan (2013). This Chapter was done in collaboration with Dr. Renata Freitas from IBMC. Some work was also developed in Laboratory of Professor Eduardo Rocha at ICBAS- Instituto de Ciências Biomédicas Abel Salazar. This work was funded by FCT scholarship with reference: SFRH/ BD/ 79821/ 2011 “The theories exposed in this work are the exclusive responsibility of the author” AKNOWLEDGMENTS I am grateful to my supervisor Dr. Jonathan Wilson and my co-supervisor Dr. Filipe Castro. This fascinating work begun almost one decade ago (2007) with my master that allow we work together until now. Thanks to Professor João Coimbra to be so kind and to show interested in my work. -
2Nd ECOLOGY and EVOLUTIONARY BIOLOGY SYMPOSIUM, TURKEY
2 nd ECOLOGY AND EVOLUTIONARY BIOLOGY SYMPOSIUM, TURKEY August 6 th-7 th 2015 Symposium Programme & Abstract Book Middle East Technical University Ankara, 2015 2 nd Ecology and Evolutionary Biology Symposium, Turkey, 2015 Organizing Committee Meeting Organizers: Support Team at METU Biology: Aysegul Birand (METU Biology) Arev Pelin Sümer Mehmet Somel (METU Biology) Ayshin Ghalichi Çiğdem Akın Pekşen Duha Alioğlu Ekin Sağlıcan Emel Çakmak Eren Yüncü M.Çisel Kemahlı Melike Dönertaş Nihan Dilşad Dağtaş Poorya Parvizi Tuba Bucak Uğur Işkın Zeynep Ersoy Scientific Committee: Meryem Beklioglu (METU Biology) Can Bilgin (METU Biology) Rasit Bilgin (Bogazici U. Environmental Sciences) Hakan Gur (Ahi Evran U. Biology) Ergi Deniz Ozsoy (Hacettepe U. Biology) Utku Perktas (Hacettepe U. Biology) Ismail Saglam (Hacettepe U. Biology) Cagatay Tavsanoglu (Hacettepe U. Biology) Inci Togan (METU Biology) 2 of 34 2 2 nd Ecology and Evolutionary Biology Symposium, Turkey, 2015 Symposium Programme August 5, 2015 17:00 - 20:00 Registration August 6, 2015 08:30 - 09:00 Registration Session 1 Chair: Ayşegül Birand 09:00 - 09:15 Opening remarks 09:15 - 10:15 Sergey Gavrilets - Collective action and the collaborative brain 10:15 - 10:30 I smail K. Saglam - Phylogenomic reconstructions predicts a single unique event leading to the origin of two icons of science Devils' Hole and Devils Hole Pupfish 10:30 - 10:45 Tutku Aykanat - Age at maturity in 56 Atlantic salmon populations is controlled by a single large effect locus with sex dependent dominance 10:45 - 11:15 -
Freshwater Fishes of Turkey: a Revised and Updated Annotated Checklist
BIHAREAN BIOLOGIST 9 (2): 141-157 ©Biharean Biologist, Oradea, Romania, 2015 Article No.: 151306 http://biozoojournals.ro/bihbiol/index.html Freshwater fishes of Turkey: a revised and updated annotated checklist Erdoğan ÇIÇEK1,*, Sevil Sungur BIRECIKLIGIL1 and Ronald FRICKE2 1. Nevşehir Hacı Bektaş Veli Üniversitesi, Faculty of Art and Sciences, Department of Biology, 50300, Nevşehir, Turkey. E-mail: [email protected]; [email protected] 2. Im Ramstal 76, 97922 Lauda-Königshofen, Germany, and Staatliches Museum für Naturkunde, Rosenstein 1, 70191 Stuttgart, Germany. E-Mail: [email protected] *Corresponding author, E. Çiçek, E-mail: [email protected] Received: 24. August 2015 / Accepted: 16. October 2015 / Available online: 20. November 2015 / Printed: December 2015 Abstract. The current status of the inland waters ichthyofauna of Turkey is revised, and an updated checklist of the freshwater fishes is presented. A total of 368 fish species live in the inland waters of Turkey. Among these, 3 species are globally extinct, 5 species are extinct in Turkey, 28 species are non-native and 153 species are considered as endemic to Turkey. We recognise pronounced species richness and a high degree of endemism of the Turkish ichthyofauna (41.58%). Orders with the largest numbers of species in the ichthyofauna of Turkey are the Cypriniformes 247 species), Perciformes (43 species), Salmoniformes (21 species), Cyprinodontiformes (15 species), Siluriformes (10 species), Acipenseriformes (8 species) and Clupeiformes (8 species). At the family level, the Cyprinidae has the greatest number of species (188 species; 51.1% of the total species), followed by the Nemacheilidae (39), Salmonidae (21 species), Cobitidae (20 species), Gobiidae (18 species) and Cyprinodontidea (14 species). -
Descriptive Osteology of a Newly Described Stone Loach, Oxynoemacheilus Chomanicus (Kamangar Et Al., 2014)(Cypriniformes, Nemacheilidae)
Hindawi Publishing Corporation International Journal of Zoology Volume 2016, Article ID 2836518, 7 pages http://dx.doi.org/10.1155/2016/2836518 Research Article Descriptive Osteology of a Newly Described Stone Loach, Oxynoemacheilus chomanicus (Kamangar et al., 2014) (Cypriniformes, Nemacheilidae) Parvin Mafakheri, Soheil Eagderi, and Amir Qadermarzi Department of Fisheries, Faculty of Natural Resources, University of Tehran, P.O. Box 4314, Karaj, Iran Correspondence should be addressed to Soheil Eagderi; [email protected] Received 31 July 2015; Revised 18 December 2015; Accepted 5 January 2016 Academic Editor: Iain J. McGaw Copyright © 2016 Parvin Mafakheri et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Oxynoemacheilus chomanicus is a newly described species of the family Nemacheilidae from the Choman River drainage of the Tigris basin. This study was conducted to provide the detailed osteological characteristics of this species and comparing them with those of other endemic species of the genus Oxynoemacheilus from inland water basins of Iran, namely, kiabii, O. persa, O. brandtii, O. kermanshahensis,andO. bergianus. For this purpose, nine specimens of O. chomanicus were collected, cleaned, and stained for osteological examination. Then, a detailed description of their skeletal structure was provided. The results showed that O. chomanicus can be distinguished from other studied species of the genus Oxynoemacheilus due to possessing an orbital shelf, number of the vertebrae, number of the hypurals, number of the unbranched rays in anal fin, features of the hemal and neural spines, and connection pattern of the parietal and frontal.