Regulating Filopodial Dynamics Through Actin-Depolymerizing Factor
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Human Periprostatic Adipose Tissue: Secretome from Patients With
CANCER GENOMICS & PROTEOMICS 16 : 29-58 (2019) doi:10.21873/cgp.20110 Human Periprostatic Adipose Tissue: Secretome from Patients With Prostate Cancer or Benign Prostate Hyperplasia PAULA ALEJANDRA SACCA 1, OSVALDO NÉSTOR MAZZA 2, CARLOS SCORTICATI 2, GONZALO VITAGLIANO 3, GABRIEL CASAS 4 and JUAN CARLOS CALVO 1,5 1Institute of Biology and Experimental Medicine (IBYME), CONICET, Buenos Aires, Argentina; 2Department of Urology, School of Medicine, University of Buenos Aires, Clínical Hospital “José de San Martín”, Buenos Aires, Argentina; 3Department of Urology, Deutsches Hospital, Buenos Aires, Argentina; 4Department of Pathology, Deutsches Hospital, Buenos Aires, Argentina; 5Department of Biological Chemistry, School of Exact and Natural Sciences, University of Buenos Aires, Buenos Aires, Argentina Abstract. Background/Aim: Periprostatic adipose tissue Prostate cancer (PCa) is the second most common cancer in (PPAT) directs tumour behaviour. Microenvironment secretome men worldwide. While most men have indolent disease, provides information related to its biology. This study was which can be treated properly, the problem consists in performed to identify secreted proteins by PPAT, from both reliably distinguishing between indolent and aggressive prostate cancer and benign prostate hyperplasia (BPH) disease. Evidence shows that the microenvironment affects patients. Patients and Methods: Liquid chromatography-mass tumour behavior. spectrometry-based proteomic analysis was performed in Adipose tissue microenvironment is now known to direct PPAT-conditioned media (CM) from patients with prostate tumour growth, invasion and metastases (1, 2). Adipose cancer (CMs-T) (stage T3: CM-T3, stage T2: CM-T2) or tissue is adjacent to the prostate gland and the site of benign disease (CM-BPH). Results: The highest number and invasion of PCa. -
A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated. -
Protein Identities in Evs Isolated from U87-MG GBM Cells As Determined by NG LC-MS/MS
Protein identities in EVs isolated from U87-MG GBM cells as determined by NG LC-MS/MS. No. Accession Description Σ Coverage Σ# Proteins Σ# Unique Peptides Σ# Peptides Σ# PSMs # AAs MW [kDa] calc. pI 1 A8MS94 Putative golgin subfamily A member 2-like protein 5 OS=Homo sapiens PE=5 SV=2 - [GG2L5_HUMAN] 100 1 1 7 88 110 12,03704523 5,681152344 2 P60660 Myosin light polypeptide 6 OS=Homo sapiens GN=MYL6 PE=1 SV=2 - [MYL6_HUMAN] 100 3 5 17 173 151 16,91913397 4,652832031 3 Q6ZYL4 General transcription factor IIH subunit 5 OS=Homo sapiens GN=GTF2H5 PE=1 SV=1 - [TF2H5_HUMAN] 98,59 1 1 4 13 71 8,048185945 4,652832031 4 P60709 Actin, cytoplasmic 1 OS=Homo sapiens GN=ACTB PE=1 SV=1 - [ACTB_HUMAN] 97,6 5 5 35 917 375 41,70973209 5,478027344 5 P13489 Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2 - [RINI_HUMAN] 96,75 1 12 37 173 461 49,94108966 4,817871094 6 P09382 Galectin-1 OS=Homo sapiens GN=LGALS1 PE=1 SV=2 - [LEG1_HUMAN] 96,3 1 7 14 283 135 14,70620005 5,503417969 7 P60174 Triosephosphate isomerase OS=Homo sapiens GN=TPI1 PE=1 SV=3 - [TPIS_HUMAN] 95,1 3 16 25 375 286 30,77169764 5,922363281 8 P04406 Glyceraldehyde-3-phosphate dehydrogenase OS=Homo sapiens GN=GAPDH PE=1 SV=3 - [G3P_HUMAN] 94,63 2 13 31 509 335 36,03039959 8,455566406 9 Q15185 Prostaglandin E synthase 3 OS=Homo sapiens GN=PTGES3 PE=1 SV=1 - [TEBP_HUMAN] 93,13 1 5 12 74 160 18,68541938 4,538574219 10 P09417 Dihydropteridine reductase OS=Homo sapiens GN=QDPR PE=1 SV=2 - [DHPR_HUMAN] 93,03 1 1 17 69 244 25,77302971 7,371582031 11 P01911 HLA class II histocompatibility antigen, -
4 Mechanics of the Cytoskeleton
4 Mechanics of the cytoskeleton 4.1 Motivation In the previous section, we have seen how biopolymers dynamically assemble and dis- assemble during polymerization. We have discussed the individual mechanical prop- erties such as Young’s modulus E, the axial stiffness EA, the bending stiffness EI, and the persistence length A for individual filaments. In particular, have talked about actin filaments, intermediate filaments, and microtubules. Now, assuming we know the me- chanical properties of the individual filaments, what does that actually tell us about the assembly of filaments that we find in the cell? Or, to put it differently, if we knew elements of the cytoskeleton microtubules intermediate filaments actin filaments Figure 4.1: The cytoskeleton provides structural stability and is responsible for forces during cell loco- motion. Microtubules are thick hollow cylinders reaching out from the nucleus to the membrane, inter- mediate filaments can be found anywhere in the cytosol, and actin filaments are usually concentrated close to the cell membrane. the structural arrangement of filaments, could we then predict the stiffness of the over- all assembly? How does the filament microstructure affect cytoskeletal properties? Or, more precisely, how can we calculate the macroscopic network properties from the in- dividual microscopic filament properties? In mechanics, the derivation of macroscopic parameters based on microscopic considerations is referred to as homogenization. In this chapter, we illustrate the homogenization by means of three different examples, the fiber bundle model for filopodia, the network model for red blood cell membranes, and the tensegrity model for generic cell structures. 4.2 Fiber bundle model for filopodia Filopodia are thin dynamic cytoplasmic projections composed of tight bundles of long actin filaments extending from the leading edge of migrating cells. -
Microrna Regulatory Pathways in the Control of the Actin–Myosin Cytoskeleton
cells Review MicroRNA Regulatory Pathways in the Control of the Actin–Myosin Cytoskeleton , , Karen Uray * y , Evelin Major and Beata Lontay * y Department of Medical Chemistry, Faculty of Medicine, University of Debrecen, 4032 Debrecen, Hungary; [email protected] * Correspondence: [email protected] (K.U.); [email protected] (B.L.); Tel.: +36-52-412345 (K.U. & B.L.) The authors contributed equally to the manuscript. y Received: 11 June 2020; Accepted: 7 July 2020; Published: 9 July 2020 Abstract: MicroRNAs (miRNAs) are key modulators of post-transcriptional gene regulation in a plethora of processes, including actin–myosin cytoskeleton dynamics. Recent evidence points to the widespread effects of miRNAs on actin–myosin cytoskeleton dynamics, either directly on the expression of actin and myosin genes or indirectly on the diverse signaling cascades modulating cytoskeletal arrangement. Furthermore, studies from various human models indicate that miRNAs contribute to the development of various human disorders. The potentially huge impact of miRNA-based mechanisms on cytoskeletal elements is just starting to be recognized. In this review, we summarize recent knowledge about the importance of microRNA modulation of the actin–myosin cytoskeleton affecting physiological processes, including cardiovascular function, hematopoiesis, podocyte physiology, and osteogenesis. Keywords: miRNA; actin; myosin; actin–myosin complex; Rho kinase; cancer; smooth muscle; hematopoiesis; stress fiber; gene expression; cardiovascular system; striated muscle; muscle cell differentiation; therapy 1. Introduction Actin–myosin interactions are the primary source of force generation in mammalian cells. Actin forms a cytoskeletal network and the myosin motor proteins pull actin filaments to produce contractile force. All eukaryotic cells contain an actin–myosin network inferring contractile properties to these cells. -
Novel Myosin Mutations for Hereditary Hearing Loss Revealed by Targeted Genomic Capture and Massively Parallel Sequencing
European Journal of Human Genetics (2014) 22, 768–775 & 2014 Macmillan Publishers Limited All rights reserved 1018-4813/14 www.nature.com/ejhg ARTICLE Novel myosin mutations for hereditary hearing loss revealed by targeted genomic capture and massively parallel sequencing Zippora Brownstein1,6, Amal Abu-Rayyan2,6, Daphne Karfunkel-Doron1, Serena Sirigu3, Bella Davidov4, Mordechai Shohat1,4, Moshe Frydman1,5, Anne Houdusse3, Moien Kanaan2 and Karen B Avraham*,1 Hereditary hearing loss is genetically heterogeneous, with a large number of genes and mutations contributing to this sensory, often monogenic, disease. This number, as well as large size, precludes comprehensive genetic diagnosis of all known deafness genes. A combination of targeted genomic capture and massively parallel sequencing (MPS), also referred to as next-generation sequencing, was applied to determine the deafness-causing genes in hearing-impaired individuals from Israeli Jewish and Palestinian Arab families. Among the mutations detected, we identified nine novel mutations in the genes encoding myosin VI, myosin VIIA and myosin XVA, doubling the number of myosin mutations in the Middle East. Myosin VI mutations were identified in this population for the first time. Modeling of the mutations provided predicted mechanisms for the damage they inflict in the molecular motors, leading to impaired function and thus deafness. The myosin mutations span all regions of these molecular motors, leading to a wide range of hearing phenotypes, reinforcing the key role of this family of proteins in auditory function. This study demonstrates that multiple mutations responsible for hearing loss can be identified in a relatively straightforward manner by targeted-gene MPS technology and concludes that this is the optimal genetic diagnostic approach for identification of mutations responsible for hearing loss. -
Of Polarity Ups and Downs of Guided Vessel Sprouting
Ups and Downs of Guided Vessel Sprouting: The Role of Polarity Christina Y. Lee and Victoria L. Bautch Physiology 26:326-333, 2011. doi:10.1152/physiol.00018.2011 You might find this additional info useful... This article cites 82 articles, 38 of which can be accessed free at: /content/26/5/326.full.html#ref-list-1 This article has been cited by 2 other HighWire hosted articles Rasip1 regulates vertebrate vascular endothelial junction stability through Epac1-Rap1 signaling Christopher W. Wilson, Leon H. Parker, Christopher J. Hall, Tanya Smyczek, Judy Mak, Ailey Crow, George Posthuma, Ann De Mazière, Meredith Sagolla, Cecile Chalouni, Philip Vitorino, Merone Roose-Girma, Søren Warming, Judith Klumperman, Philip S. Crosier and Weilan Ye Blood, November 21, 2013; 122 (22): 3678-3690. [Abstract] [Full Text] [PDF] Cas and NEDD9 Contribute to Tumor Progression through Dynamic Regulation of the Cytoskeleton Michael S. Guerrero, J. Thomas Parsons and Amy H. Bouton Genes & Cancer, May , 2012; 3 (5-6): 371-381. [Abstract] [Full Text] [PDF] Downloaded from Updated information and services including high resolution figures, can be found at: /content/26/5/326.full.html Additional material and information about Physiology can be found at: http://www.the-aps.org/publications/physiol on August 25, 2014 This information is current as of August 25, 2014. Physiology (formerly published as News in Physiological Science) publishes brief review articles on major physiological developments. It is published bimonthly in February, April, June, August, October, and December by the American Physiological Society, 9650 Rockville Pike, Bethesda MD 20814-3991. Copyright © 2011 by the American Physiological Society. -
Genome-Wide Identification, Characterization and Expression
G C A T T A C G G C A T genes Article Genome-Wide Identification, Characterization and Expression Profiling of myosin Family Genes in Sebastes schlegelii Chaofan Jin 1, Mengya Wang 1,2, Weihao Song 1 , Xiangfu Kong 1, Fengyan Zhang 1, Quanqi Zhang 1,2,3 and Yan He 1,2,* 1 MOE Key Laboratory of Molecular Genetics and Breeding, College of Marine Life Sciences, Ocean University of China, Qingdao 266003, China; [email protected] (C.J.); [email protected] (M.W.); [email protected] (W.S.); [email protected] (X.K.); [email protected] (F.Z.); [email protected] (Q.Z.) 2 Laboratory of Tropical Marine Germplasm Resources and Breeding Engineering, Sanya Oceanographic Institution, Ocean University of China, Sanya 572000, China 3 Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266003, China * Correspondence: [email protected]; Tel.: +86-0532-82031986 Abstract: Myosins are important eukaryotic motor proteins that bind actin and utilize the energy of ATP hydrolysis to perform a broad range of functions such as muscle contraction, cell migration, cytokinesis, and intracellular trafficking. However, the characterization and function of myosin is poorly studied in teleost fish. In this study, we identified 60 myosin family genes in a marine teleost, black rockfish (Sebastes schlegelii), and further characterized their expression patterns. myosin showed divergent expression patterns in adult tissues, indicating they are involved in different types and Citation: Jin, C.; Wang, M.; Song, W.; compositions of muscle fibers. Among 12 subfamilies, S. schlegelii myo2 subfamily was significantly Kong, X.; Zhang, F.; Zhang, Q.; He, Y. -
Myth4-FERM Myosin Based Filopodia Initiation
MyTH4-FERM Myosin based filopodia initiation A DISSERTATION SUBMITTED TO THE FACULTY OF THE GRADUATE SCHOOL OF THE UNIVERSITY OF MINNESOTA BY Ashley L. Arthur IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY Margaret A. Titus, PhD ADVISOR July 2020 © Ashley L Arthur 2020 ACKNOWLEDGEMENTS I would first and foremost like to advisor my mentor, Dr. Margaret Titus, for her unassailable commitment to training, enthusiasm for science and her sup- port of my career. Meg has been superb advisor, has made me a better scientist and communicator and I genuinely enjoyed working for her. I am grateful for the long list of positive experiences and opportunities I gained while working in the Titus lab. I would like to thank all of my past and present lab mates. Thank you to Hilary Bauer, Sinzi Cornea and Zoe Henrot for welcoming me into the lab when I started and especially to Karl Petersen who share his imaging and analysis ex- pertise. I am so grateful for the help and from my PLA project teammate Livia Songster, you brought such great energy to the project and to the lab. Thanks Casey Eddington, Annika Schroeder for their support, encouragement and help reading and discussing many aspect of this work. Thanks to the University of MN undergraduate students who joined my on research projects over the years espe- cially to Himanshu Jain. I would like to thank Jordan Beach at Loyola, Guillermo Marques, Mark Sanders, for their help with imaging. I thank Ashim Rai for his as- sistance with motor purification and motility assays. -
Role of the Microtubule-Associated Protein ATIP3 in Cell Migration and Breast Cancer Metastasis Angie Molina Delgado
Role of the microtubule-associated protein ATIP3 in cell migration and breast cancer metastasis Angie Molina Delgado To cite this version: Angie Molina Delgado. Role of the microtubule-associated protein ATIP3 in cell migration and breast cancer metastasis. Molecular biology. Université René Descartes - Paris V, 2014. English. NNT : 2014PA05T022. tel-01068663 HAL Id: tel-01068663 https://tel.archives-ouvertes.fr/tel-01068663 Submitted on 26 Sep 2014 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Université Paris Descartes Ecole doctorale BioSPC Thesis submitted towards fulfillment of the requirement for the degree of DOCTOR of Health & Life Sciences Specialized in Cellular and Molecular Biology Role of the microtubule-associated protein ATIP3 in cell migration and breast cancer metastasis By Angie Molina Delgado Under supervision of Dr. Clara Nahmias Thesis defense 3 September, 2014 Members of jury: Dr. Ali BADACHE Reviewer Dr. Laurence LAFANECHERE Reviewer Dr. Franck PEREZ Examiner Dr. Stéphane HONORE Examiner Dr. Clara NAHMIAS Thesis Director Table of Contents List of abbreviations ....................................................................................................................... 9 “Rôle de la protéine associée aux microtubules ATIP3 dans la migration cellulaire et la formation de métastases du cancer du sein” ................................................................................................ 11 I. -
Dynamics of Thin Filopodia During Sea Urchin Gastrulation
Development 121, 2501-2511 (1995) 2501 Printed in Great Britain © The Company of Biologists Limited 1995 Dynamics of thin filopodia during sea urchin gastrulation Jeffrey Miller1, Scott E. Fraser2 and David McClay1,* 1Developmental, Cell and Molecular Biology, Duke University, SRC, Box 91000, Durham, NC 27708, USA 2Division of Biology, Beckman Institute (139-74), California Institute of Technology, Pasadena CA 91125, USA *Author for correspondence: e-mail [email protected] SUMMARY At gastrulation in the sea urchin embryo, a dramatic involvement in cell-cell interactions associated with rearrangement of cells establishes the three germ layers of signaling and patterning at gastrulation. Nickel-treatment, the organism. Experiments have revealed a number of cell which is known to create a patterning defect in skeleto- interactions at this stage that transfer patterning informa- genesis due to alterations in the ectoderm, alters the normal tion from cell to cell. Of particular significance, primary position-dependent differences in the thin filopodia. The mesenchyme cells, which are responsible for production of effect is present in recombinant embryos in which the the embryonic skeleton, have been shown to obtain ectoderm alone was treated with nickel, and is absent in extensive positional information from the embryonic recombinant embryos in which only the primary mes- ectoderm. In the present study, high resolution Nomarski enchyme cells were treated, suggesting that the filopodial imaging reveals the presence of very thin filopodia (0.2-0.4 length is substratum dependent rather than being primary µm in diameter) extending from primary mesenchyme cells mesenchyme cell autonomous. The thin filopodia provide a as well as from ectodermal and secondary mesenchyme means by which cells can contact others several cell cells. -
002 Sempozyum1 5 SON.Qxd
Abstracts www.anatomy.org.tr doi:10.2399/ana.11.001s Abstracts for the Joint Meeting of Anatomical Societies, 19-22 May 2011, Bursa, Turkey Anatomy 2011; 5 Suppl: S1-S171, © 2011 TSACA Opening Lecture New genoarchitectonic viewpoints on the developing hypothalamus Puelles L effects suggests that, rather than being a diencephalic floor ele- ment, the hypothalamus is best understood as a transverse region Department of Human Anatomy, Faculty of lying ventral to the telencephalon and rostral to the dien- Medicine, University of Murcia, Murcia, Spain cephalon; the latter separates it from the midbrain. A number of gene expression patterns observed in the developing forebrain, part of the emergent genoarchitectonic neuroanatomy, have The anatomic concept of the hypothalamus changed consider- revealed the true topologic position of the hypothalamus, as well ably since its earliest definition. Tridimensional reconstructions, as the nature of its fundamental subdivisions. There are interest- experiments and many staining methods have expanded consid- ing parallelisms with genoarchitectonic patterns in the dien- erably the number of anatomical details recognized in this terri- cephalon and midbrain. In all these cases continuous longitudi- tory, probably one of the most complex in the brain. For a long nal domains can be distinguished, as well as a number of antero- time the predominant anatomic view has interpreted the hypo- posterior (transverse) neuromeric units of the neural wall. The thalamus as a longitudinal column at the floor of the dien- hypothalamus has been newly recognized to have two antero- cephalon, connected rostrally with the telencephalon and cau- posterior neuromeric subdivisions, named terminal and pedun- dally with the midbrain.